Hi Bluesky community - I'm teaching computational genomics again in the Spring term; always happy to have auditors or folks Zoom in. Just have your students email me for deets.

Joshua trees make the cover of @newphyt.bsky.social for the issue with our paper, led by @kheyduk.bsky.social, showing that they use water-saving CAM photosynthesis — but only sometimes 🌿 buff.ly/WnPoRXa

Amy Angert and I are recruiting a #postdoc to participate in a collaborative NSF-funded study of demographic responses to climate across the geographic range of the scarlet monkeyflower. Please repost! jobs.ncsu.edu/postings/224...

If you need a professional terrestrial phototroph you need a symbiont of plant+fungi. Lichen (Spongiophyton sp) colonized the land already at least in the Early Devonian: www.science.org/doi/10.1126/... 🧪 ⚒️ #Paleobio #EvoBio #Geology

UC Provost Katherine Newman has announced plans to defund this program, a preemptive capitulation with the feds that has not been ordered and should not occur. Newman has done this with zero consultation with campus-level leadership and none with any faculty — mentors or former fellows included.

The President’s Postdoctoral Fellowship Program, PPFP, has been a jewel in the crown for faculty development and recruitment at the University of California for years and the results have been an expanded faculty with almost 100% tenure rates — unprecedented success.

Our latest #preprint led by Yumary M. Vasquez & Frederik Schulz @jgi.doe.gov The largest database of giant #virus MAGs (GVMAGs V2) with >18,000 genomes from #marine, freshwater, anthropogenic and terrestrial environments. www.biorxiv.org/content/10.1...

I am hiring! - looking for a Staff Scientist to co-run my research group with me. Staff Scientist is a senior professional scientist role at EMBL. Please forward to people you might know who could be interested! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

Excited to share our preprint led by Carlos Voogdt et al We developed new genetic tools & genome-wide libraries for species of the Bacteroidales order; constructed saturated barcoded transposon libraries in key representatives of three genera. www.biorxiv.org/content/10.1...

This is one of the most common types of bacteria in the human gut - and @typaslab.bsky.social lab @embl.org is doing the hard yards to being able to understand this critical bacteria in far far more detail. Rock on!

(COI: I am a longstanding consultant and shareholder of Oxford nanopore). This has been cooking away (the scaling of DNA tech is... that there is a lot of space at the bottom - and also time / Hz space) and nice to see the price for long reads (with methylation!) continue to drop. Whoop!

Fungal phylum-level classification update now available! Used "innovative taxonomy" to describe >100 taxa, from species to phylum, based on long reads, characteristic nucleotides and env-samples. mycokeys.pensoft.net/article/1616... #fungi #taxonomy #PacBio #classification #eDNA

I’m very happy this is finally out! Here, we showcase the combination of BONCAT and SIP metaproteomics to uncover rare and active microbes driving anaerobic acetate turnover. We are excited to see what other microbial metabolisms and ecosystems this approach can help to illuminate! 🦠

Fungal #GenomeSize variation is largely driven by TEs & lineage-specific genome defenses. @tbadet.bsky.social & @danielcroll.bsky.social show that presence/absence of RIP mutation systems influences #genome architecture, identifying a likely novel defense mechanism @plosbiology.org 🧪 plos.io/4hcC5tx

Registration open for #Fungal26 genetics-gsa.org/fungal-2026/ at Asilomar.

Today my @nytimes.com colleagues and I are launching a new series called Lost Science. We interview US scientists who can no longer discover something new about our world, thanks to this year‘s cuts. Here is my first interview with a scientist who studied bees and fires. Gift link: nyti.ms/3IWXbiE

This was a great read. I feel similarly.

And it's posted! If you're interested and eligible, please consider applying through the UMD portal: umd.wd1.myworkdayjobs.com/en-US/UMCP/j.... If you're a PI working in algorithmic genomics (& you can recommend my lab to your top graduating students ;P), please let them know!

Assistant Professor Plant or Fungal Genomics. Univ of Wyoming. eeik.fa.us2.oraclecloud.com/hcmUI/Candid...

📣 Our department is hiring an Assistant Professor in Evolutionary Cell and Molecular Biology to join the @weillinstitute.bsky.social PLS spread the word! academicjobsonline.org/ajo/jobs/30607

So now the beetles can eat in peace (sans butterscotch-flavored death), the fungus grows in the resin channels, eventually killing the tree & staining the wood blue. Only one thing can save it: forest fires. But only LITTLE ones.

The terpenes in resin repel & toxify the beetle while smelling like a candy store. But the beetle has a secret weapon. A partnership with a 'blue stain fungi'. The beetle has a special structure on their head that stores the fungus. And the fungus stops the resin by clogging it up.

thefutureisfungi.awardsplatform.com Future is Fungi startup award applications are open. 🍄

Please repost -- The Univ. California Davis dept of Plant Pathology is hiring a Fungal biologist / Mycologist Applications due Dec 1 Application portal: recruit.ucdavis.edu/JPF07339 Screenshot shows part of the job posting (with alt-text of the same text)

Our department of Plant Molecular Biology at the University of Lausanne @unil.bsky.social is recruiting a Tenure-Track Assistant Professor in the field of Plant-Organism Interactions 🌱🐛🦠🍄! Application before November 30, 2025. See the official job ad for more details: tinyurl.com/mtxdcz6p

Very important paper and resource. Bryophyte genomes expanded by one order of magnitude. www.nature.com/articles/s41...

Assistant Professor of Plant Pathology & Fungal Biology, UC Davis. 🍄🌱 recruit.ucdavis.edu/JPF07339 Deadline Dec 1, 2025. 👀 "Primary teaching responsibilities will be teaching Introductory Mycology, an upper-division lab class, and SAS 30, Mushroom, Molds & Society"

ExFAB user proposals are now being accepted for our first open call. exfab.engineering.ucsb.edu/call-externa...

Please apply to our tenure-track faculty position at @stanford-chemh.bsky.social! We are searching for a new colleague working at the interface between computation and molecular sciences. See post below and pls forward widely! chemh.stanford.edu/opportunitie...

Such a delight to share our work on the evolution of a cheese rind fungus in @currentbiology.bsky.social. This is the fantastic PhD work of @nicolasleonlouw.bsky.social and resulted from amazing collaborations, a wedding proposal(!), an undergrad course, & more! 🧵 www.cell.com/current-biol...

Please check out our updated version of this preprint - now with even more transposable elements! 🧬🦠 No really, we added in a few more analyses about TEs and further compared Mycetohabitans to related bacteria, plus other treats. @bhuwanabbot.bsky.social www.biorxiv.org/content/10.1...

Assistant Professor (Quantitative Microbe-Plant-Environment Interactions), Dept of Microbiology, Fall 2026 apply.interfolio.com/173345 at University of Tennessee - Knoxville. Position is part of a faculty cluster hire in Bioinformatics, Genomics and Quantitative-based Solutions for Food Security.

Long-term monitoring of a North American cheese cave reveals mechanisms and consequences of fungal adaptation Penicillium solitum over 8 years in a cheese cave => green-to-white shift @currentbiology.bsky.social from @benwolfe.bsky.social with @kellerlab.bsky.social www.cell.com/current-biol...

Microtubules in Asgard archaea (h/t @lanzen.bsky.social) www.cell.com/cell/fulltex... #jcampubs

Dept of Plant Biology at UIUC hiring in any subdiscipline of Mycology and/or Plant-Fungal Interactions tenure-track faculty position at the assistant professor level. Apply by Oct 31, 2025. For complete details including salary and benefit information, visit go.illinois.edu/PlantBiolfac...

The Department of Biology at Colorado State University is hiring an Assistant Professor in the area of plant-microbe interactions! Please spread the word! jobs.colostate.edu/postings/165...

Super excited about this new Open Rank tenure-track faculty search for the MSU Plant Resilience Institute. We successfully hired two excellent new faculty in our last search and we are hoping to build on that success with this search. careers.msu.edu/jobs/assista...

🎙️ Job Announcement: Penn State is seeking an ASSISTANT PROFESSOR in MICROBIOLOGY (any subdiscipline) in the Department of Biochemistry and Molecular Biology. Learn more and Join the Microbiome Jubilee: psu.wd1.myworkdayjobs.com/en-US/PSU_Ac...

Preprint out for myloasm, our new nanopore / HiFi metagenome assembler! Nanopore's getting accurate, but 1. Can this lead to better metagenome assemblies? 2. How, algorithmically, to leverage them? with co-author Max Marin @mgmarin.bsky.social, supervised by Heng Li @lh3lh3.bsky.social 1 / N

JOB ALERT @bertuzzilab.bsky.social is recruiting 2 Research Associates for a project on Mucorales! Very exciting and can definitely recommend working with this group ☺️ www.jobs.manchester.ac.uk/Job/JobDetai...

We have several open positions in my group, funded from the ERC Grant on the Early Sequestered Germline of Fungi. We search broadly for applicants at both PhD and master-level, with a dedicated interest in fungal evolutionary biology. Please forward and RT! Find the positions here: su.varbi.com

The new -outfmt 20 in BLAST 😍. No more frustrated googling to remember which column is which.....

This video from @jirihulcr.bsky.social is great for its discussion of ambrosia beetles and fungi but also on how to approach doing research. The summer school looks awesome. www.facebook.com/jiri.hulcr/v... 🪲🍄🍄‍🟫🌳🪾

The CDC has been decapitated. In my latest newsletter, I wrote about how most of the agency's division directors are gone. RFK's stated priorities for the CDC directly contradict his actions. Newsletter @kffhealthnews.org @healthbeat.org healthbeat.beehiiv.com/p/the-cdc-as...

Delighted that our work on the Sanctuary Starship #transposon is now published! A big thanks to all co-authors, especially to the ever-amazing @mcdonaldmeganc.bsky.social for her mentorship! doi.org/10.1128/mbio...

A short explanation of p-hacking and why it absolutely makes sense to ask HHS to release the study methods of their autism report in advance.