@catarinacarolina.bsky.social
📤 24
📥 24
📝 0
reposted by
Marnix Medema
13 days ago
Check out this blog from
@catarinacarolina.bsky.social
on the story behind the paper:
communities.springernature.com/posts/making...
A story of overcoming challenges, careful engineering and collaborative teamwork.
add a skeleton here at some point
0
7
3
reposted by
Marnix Medema
about 1 month ago
Now out in
@natcomms.nature.com
: versions 2.0 of both BiG-SCAPE and BiG-SLiCE! With significant speed and accuracy increases, as well as new interactive functionalities. Read the full paper here
#openaccess
:
www.nature.com/articles/s41...
1
38
22
reposted by
Mitja M. Zdouc
4 months ago
Have you ever used a
#bioinformatics
#database
and were frustrated by its lack of coverage? Did you ever think about starting your own resource? We just published a new strategy for community-driven
#biocuration
, based on our experiences with the
#MIBiG
database (1/8)!
doi.org/10.1093/bib/...
loading . . .
Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0
Abstract. Biocuration is essential to transform molecular sequence data into standardized, machine-readable resources. Such curated datasets enable compara
https://doi.org/10.1093/bib/bbaf659
1
39
16
reposted by
Marnix Medema
7 months ago
Now out as preprint: versions 2.0 of both BiG-SCAPE and BiG-SLiCE have been released! With significant speed and accuracy increases, as well as new interactive functionalities.
www.biorxiv.org/content/10.1...
loading . . .
BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
Microbial metabolic gene clusters encode the biosynthesis or catabolism of metabolites that facilitate ecological specialization, mediate microbiome interactions and constitute a major source of medic...
https://www.biorxiv.org/content/10.1101/2025.08.20.671210v1
1
32
13
reposted by
Mitja M. Zdouc
7 months ago
Into natural product biosynthesis & tailoring enzymes? Frustrated by the lack of a dedicated resource to explore their functions? Tired of endless literature searches for reaction info? Meet the MITE database, freely available at
mite.bioinformatics.nl
. Preprint:
doi.org/10.26434/che...
(1/8)
1
36
20
you reached the end!!
feeds!
log in