really feeling the kalty shaped hole in our line tonight :( hoping the undisclosed, out day-to-day injury is not too serious because the sirens need her back #pwhl #weewoo🚨

Hi all. I am very excited that after 6 years I finally got my phylogenetic comparative methods book and online exercises online. Feel free to use and share. The book is here: nhcooper123.github.io/pcm-primer/. Note that it is not finished, we had to abandon it before the sunk costs fallacy broke us

back from conference! good news: inspired 💡, better idea of how to approach some protocols, experiments to add to research plan for a more complete vision 🥼 bad news: inspired 🌟🕶️, have to rework research plan to incorporate experiments 🧬🧪, steak too juicy 🥩, lobster too buttery 🦞🧈 #academicsky

#Fungal26 need something to read on the flight home? Now obsessed with tRNAs? New Preprints! Genes near tRNAs are enriched in translational machinery: tinyurl.com/zshnf835 Hidden Diversity in Yeast tRNAs: Comparative Genomics and Modification Mapping in a Eukaryotic Subphylum tinyurl.com/3j6f3up2

What a way to end #fungal26 We laughed and we cried and we learned so much A great reminder to look back and reflect on the past It can light the way to the future Thank you Nancy Keller for being a light 🕯️ in the field

Shout out to the myco-skeeters 🦋 at #fungal26 It's been fun live posting with you! @germhuntermd.bsky.social @talbotlabtsl.bsky.social @audreykward.bsky.social @angusb.bsky.social @hyphaltip.bsky.social @uehlinglab.bsky.social

Next talk in our #fungal26 session on emerging fungal pathogens is Dr Lisa Couper on genomes of environmental isolates of Coccidioides for tracing human infections

Communication continues! Baoye He shares how cross-kingdom 🍄🌱 communication happens with extracellular vesicles 🫧 and RNA trafficking 🚛🧬 #fungal26

Travis Seamons invites us to 👂 listen into some microbial conversations using RNA Addressable Modification 🧬 and barcoding. (Read more here: www.nature.com/articles/s41...) #fungal26

No RNAi, big problems 🧬➡️🛑 Mycoviruses 🦠 interfering with RNAi can make fungal pathogen Cryptococcus neoformans more virulent in mouse models. 🐁😷 Fascinating talk from Jun Huang. #fungal26

Cook your morels and avoid painkillers at night- fungal wisdom at #Fungal26

Jasmine Ono (@jtono.bsky.social) discussing some matchmaking mechanisms gone wrong 😱 💔 Saccharomyces paradoxus and Saccharomyces cerevisiae F1 hybrids are sterile largely due to recombination rejection 🛑✋🏻 due to mis-segregation of chromosomes 🧬➡️❔🤷‍♀️ #fungal26

María Angélica Bravo Núñez uses natural isolates of Saccharomyces cerevisiae 🌳🧫 to understand how aneuploidy and structural variation 🧬🧱 changes over time. Take home message (with some of my own soapboxing): don’t just rely on lab strains - look for natural variation in the wild! 🏕️🍇 #fungal26

Hanne Griem-Krey discussing ✨🚀 Starship-mediated horizontal gene transfer 🧬➡️🧬 of transposable elements in the insect pathogen 🐜😷 Metarhizum anisoplaie. #fungal26

Hey #Fungal26 attendees, vote for your next Fungal Genetics Policy Committee through the conference app! These folks work with @genetics-gsa.bsky.social to organize your conference 🍄

Lluvia Vargas Gastélum shares the fractured 💔 genome 🧬 of the Basidiobolus Why are there so many chromomes!? Could it be the LINES near telomeres? #fungal26

Emile Gluck-Thaler elucidating the mysteries 🔎 🫆 of fungal variation and phenotype using 🚀✨ Starship transposon framework. How do these 🔗 link to and impact fungal evolution? #fungal26

Really, really fascinating talk from the Tsai lab (@ishengtsai.bsky.social) about the fungi Acrodontium living in the mucilage of the carnivorous plant 🪰🪴 ☀️ Drosera - and how it promotes prey digestion! 🍴#fungal26

@evelinesnelders.bsky.social shares work utilizing citizen science 👥🥼🧪 to sample for airborne fungal resistance with Schimmelradar (fungal radar) program 🍄📡 - and some really cool results showing land use is a better predictor for azole resistance! 💪🏻 #fungal26

@lablabella.bsky.social labmate Caroline West sharing some collaborative work with the @morgancarterphd.bsky.social lab exploring 👀💻 codon usage patterns in R. microsporus, its bacterial endosymbiont, and the phages within the bacteria! 🦠🧬🧪 #fungal26

Jack Gregory explores the diversity of endohyphal 🍄 bacteria 🦠 of clinical samples of Mucorales He searched 🔎 in WGS data for Mycetohabitans DNA 🧬 Then took that approach to clinical 🏥 samples #fungal26

Marie-Claire Harrison tells us how machine learning algorithms 💻 can be used to predict and link ⛓️ phenotype-genotype relationships (like antifungal resistance) across clinical and environmental fungi. #fungal26

CNV 1️⃣2️⃣3️⃣🧬 has a big influence on drug resistance - Rebecca Shapiro’s group has developed a CRISPR activation system for C. albicans and C. glabrata to overexpress genes and ID those genes associated with resistance. 💪💊 #fungal26

Powerful opening by Aleeza Gerstein to Javier San Juan Galan’s work calling the scientific community to think about how we can include peers who are unable to attend meetings due to visa issues. 🌐🫶 Also - really fascinating work on the variation within clinical populations of C. albicans! #fungal26

Marion Perrier work using graph pangenomics in Aspergillus fumigatus 🫁🧫 to reveal genes missing from the reference genome. 🧩🧬 #fungal26

Could the rapid multiple drug resistance seen in Candida auris be due to hypermutation? 😷💊 David Firer looks into clinical isolates to investigate. 🔎 #fungal26

Absolutely fantastic inaugural Fungal Spore Award talk 🏆 from Matthew Fisher. The Anthropocene is an ongoing fungal evolution experiment - like a game of Spore with real world consequences. 🕹️🦠🧬 How does human activity impose selection parameters within fungal evolution? #fungal26

Wheat tandem-kinases 🌾 👯‍♀️ mediate resistance and immunity to fungal pathogens - using a rice 🍚 model to utilize accessible genetic tools. Great talk on some fascinating work by @yichangsung.bsky.social! #fungal26 (Read more here: par.nsf.gov/servlets/pur...)

How your email finds me #fungal26

@lablabella.bsky.social shares how we can utilize machine learning to understand patterns of codon usage bias across phenotypes in Saccharomycotina. #fungal26

I will be presenting my poster on endohyphal bacteria and key genes in their symbiosis, today’s session (7:00-10:30pm) at #fungal26 !

GenAI for a fun-gi 💻🧫 - Carson Andorf and his team at USDA are working to develop deep learning and generative AI models for fungal species, including predicting host-pathogen protein interactions! #fungAI #fungal26

Can filamentous and budding yeasts be friends? More than that - filamentation can be induced (and predicted!) in Saccharomycotina. Awesome talk by Christina Chavez at #fungal26 - read more here: academic.oup.com/femsyr/artic...

Olivia Riedling in the @rokaslab.bsky.social found that Aspergillus species distributions show higher richness in temperate forests and that human influence creates microhabitats. Really cool global perspective on fungal habitats and climate shifts!! 🧫🌐 #fungal26

Check out all the great work of the Lab LaBella at #fungal26 @audreykward.bsky.social @taytaypowpow.bsky.social

Tick 🕐 tock 🕓 tick 🕗 tock Deborah Bell-Pedersen discusses how the circadian clock determines not just what proteins 📈 are made, but the quality 📊 of the proteins #Fungal26

Thrilled that work from collaborative efforts by the @dbensasson.bsky.social & @mcmomany.bsky.social labs has been accepted by G3 and is available to read now! Population geneticists beware - low-level contamination has greater impact on analyses than you might expect. doi.org/10.1093/g3jo...

my new AI powered lamp is trained on millions of lamp interactions so it understands that 50% of chain pulls are to turn it on and the other 50% are to turn it off. and honestly, it's a little spooky how it knows exactly what i want almost half of the time

I've wanted to write this article for years. About my and other's struggles to even survive sometime in #academia. Thank you to the amazing editors at @plosbiology.org that gave me the forum to write this piece. #science

Audrey Ward @audreykward.bsky.social from the Bensasson lab @dbensasson.bsky.social explores the pop genomics of the yeast 🧫🧽 L. thermotolerans 🍷 They find five major divergence groups and intercontinental migration ✈️ #Evol2025 #Evol25

My second dissertation chapter is now published in PLOS Genetics! A really fun study in which we examine hybridization dynamics across space and time between monkeyflowers Mimulus guttatus and Mimulus nasutus in the Columbia River Gorge. @plos.org journals.plos.org/plosgenetics...

So excited to have successfully defended my PhD - thank you to @dbensasson.bsky.social for your mentorship and encouragement over the years!!

i wish i could write individual scripts for multiple strains listed in this text file all at once! the humble while loop:

Our accidental finding that "Low level contamination confounds population genomic analysis” is on bioRxiv - a fun collaborative project with the @mcmomany.bsky.social lab www.biorxiv.org/content/10.1...