On Day 1 of European Galaxy Days, Mina Hojat Ansari presented FAIRYMAGS: A Galaxy Workflow for MAG Recovery Applied to Termite Microbiomes. Read more: https://elixir-europe.org/how-we-work/scientific-programme/commissioned-services/science/bfsp/fairymags ##termite ##EGD2025 ##microbiomes (1/2)

Really happy to be back in Freiburg & at @uni-freiburg.de to present the Microbiology Galaxy Lab & the efforts of the microGalaxy community to build the first community-driven gateway for reproducible and FAIR analysis of microbial data. Slides: f1000research.com/slides/14-1021 #EGD

On Day 1 of European Galaxy Days, Bérénice Batut presented The Microbiology Galaxy Lab and the effort from the microGalaxy to build the first community-driven gateway for reproducible and FAIR analysis of microbial data. Read more: https://doi.org/10.1101/2024.12.23.629682 (1/2)

Today is #InternationalMicroorganismDay, a chance to celebrate the invisible powerhouses shaping our health and ecosystems. With @galaxyproject.bsky.social, we're proud to support global research that decodes the secrets of microbes, from deadly pathogens to life-sustaining bacteria.

📄 New preprint! After months/years of gathering insights and input from our incredible community, we're thrilled to share this important resource: "Ten Common Misconceptions About Galaxy (and Why They Are Wrong!)" www.preprints.org/manuscript/2...

after a long effort, gathering a lot of input from many people, we finaly put it all together: Ten Common Misconceptions About Galaxy (and Why They Are Wrong!) https://www.preprints.org/manuscript/202509.0823 Thank you very much to all people involved !

TDM & NLP 💻 applied to #taxonomy & #biodiversity literature 📚 will facilitate #data synthesis studies & #literature reviews, identification of knowledge gaps & biases, & data-informed investigation of #ecological & #evolutionary trends & patterns bdj.pensoft.net/article/1530...

taxburst v0.3.0 is now released - this is an update of the Krona visualization system for microbiome/metagenome taxonomy analyses. Enjoy!

✨ 📹 Pour se replonger encore un peu dans cette belle édition de JOBIM Bordeaux qui s'est déroulée début juillet, découvrez notre vidéo ! www.youtube.com/shorts/U2sPu...

@abretaud.bsky.social and @bebatut.bsky.social presenting @galaxyproject.bsky.social France during the @ifb-elixir-fr.bsky.social network presentation at @jobim2025.bsky.social !

As a follow-up to our poster at the @elixir-europe.org All Hands Meeting in June, Lisanna Paladin and I wrote the following blog post on how the Galaxy Training Network aligns with the Training Life-Cycle and @elixir-europe.org SPLASH recommendations. #Training @galaxyproject.bsky.social

@jobim2025.bsky.social - Épisode 13/13 🚀 Enfin, venez découvrir notre démonstration « ABRomics-analysis: a web service for the analysis of Antibiotic Resistance in bacterial genomes » ➡️ analysis.abromics.fr

📢 Inscription - L’IFB & le réseau MERIT organisent 2 jours de formation du 25 au 27 novembre 2025 pour maîtriser les langages de #workflows #Snakemake & #Nextflow 🧬💻. Optimisez vos analyses bioinformatiques et assurez leur reproductibilité !

Exciting news! We're leading a project at the ELIXIR BioHackathon Europe to make microbiome research more accessible! 🤝 We're creating a comprehensive catalog of microbiome-related bioinformatics resources, and we want YOU to join us! #Microbiome #Bioinformatics

@jobim2025.bsky.social - Épisode 6/13 🚀 Pour en savoir plus, venez découvrir notre poster « Exploring the Richness of the French Galaxy Ecosystem », qui sera présenté par @bebatut.bsky.social , le GT Galxy, Gildas et Anthony Bretaudeau !

JOBIM 2025 - Épisode 5/13 🚀 Venez découvrir notre poster «  Galaxy Training: A powerful framework for teaching! », qui sera présenté par Helena Rasche, @shiltemann.bsky.social , Björn Grüning, Galaxy Training Network et @bebatut.bsky.social #ScienceOuverte #Galaxy #Bioinformatique #Formation #FAIR

🚀🦠 Lancement de la #formation #Metagenomics and #Metatranscriptomics Initiation - 2025 autour de l’analyse de ces données sous #Galaxy !

JOBIM 2025 - Épisode 4/13 🚀 Venez découvrir notre poster «  Breaking Myths: The Reality of Galaxy’s Capabilities and Impact », qui sera présenté par Gildas Le Corguillé , Anthony Bretaudeau, Björn Grüning , le GT Galaxy et @bebatut.bsky.social !

✨📰🗓️Thank you @elixir-europe.org , we look forward to welcoming you to the next All Hands Meeting in 2026! #ELIXIR26 ✨ @cnrs-idf-villejuif.bsky.social @cnrsbiologie.bsky.social @cea.fr @inserm.fr @inrae-france.bsky.social

Today (June 1) marks the 20th anniversary of Galaxy! Thanks to all the developers, admins, researchers, trainers, educators, students and more that have made up this amazing community. Here is to the next 20 years! @galaxyproject.bsky.social @jxtxfoundation.bsky.social galaxyproject.org

Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler that I've been working on during my postdoc in the Heng Li lab (@lh3lh3.bsky.social). myloasm-docs.github.io

🚀🧬 Kick-off of the Artificial Intelligence and Machine Learning in Life Sciences training! This week, Aussois becomes the hub for an intensive program covering ML fundamentals, deep learning, generative AI, and regulatory frameworks (DOME, EU AI Act)! #AI #Bioinfo #ML

📢 🤖📚 Artificial Intelligence and Machine Learning in Life Sciences: from foundations to applications, 19–23 May 2025 in Aussois, France Hands-on training by @elixir-europe.org experts (FR, BE, CH, GR): #ML, deep learning, generative #AI, and regs (DOME, AI Act) and BYOD session!

SIGNEZ pour l'interdiction des pratiques de conversion dans l’Union européenne : eci.ec.europa.eu/043/public/#...

1 week to go! The Galaxy Training Academy kicks off next Monday! Join learners from around the world for a week of free, self-paced training in topics like: 🧬Genome Assembly 🦠Microbiome 🧠Machine Learning 🌦️Climate 🐍Python ...and more! Register by May 8th! training.galaxyproject.org/training-mat...

Our latest preprint is out describing amr.watch - a platform for monitoring AMR trends from global genomics data: www.biorxiv.org/content/10.1... (1/6)

argNorm is published now academic.oup.com/bioinformati...

🌟 Join Us for Optimising Metagenomics Assembled Genomes (MAGs) Building Workflows! 🌟 galaxyproject.org/events/2025-... MAGs building wfs are crucial for building new genomes & reducing microbial dark matter! Join our hackathon to collaboratively improve these workflows! #Metagenomics #Workflows

#EBAME 10 Microbial Ecogenomics Workshop! Brest🇫🇷, Oct 11-25, 2025. A two-week workshop of lectures & tutorials to learn about omics data analysis for microbial ecology and evolution, all in the beautiful Brest Bay! Apply here until June 1: maignienlab.gitlab.io/ebame

Happy to be in Barcelona for the @elixir-europe.org Microbiome meeting, as co-lead and a representative of @ifb-elixir-fr.bsky.social french Microbiome community

🎓Whether you're new to Galaxy or looking to enhance your data analysis skills, Galaxy Training Academy organized by @galaxyproject.bsky.social in May 2025 would be perfect for you. Learn more and register here: training.galaxyproject.org/training-mat...

#standupforscience #clermont-ferrand

#StandUpForScience #Clermont-Ferrand

Did you know that you can build pipelines in @galaxyproject.bsky.social? Check out this talk by Björn Grüning, head of the Galaxy Team @uni-freiburg.de, and discover how #Galaxy how to get started with the platform and create pipelines right away! 🔗 youtu.be/OIzWTd93k5c?... #usegalaxy #genomics

🚀 New paper alert! 🚀 Excited to share latest #Galaxy #Ecology work in GigaScience: "Guidance framework to apply best practices in ecological data analysis: lessons learned from building Galaxy-Ecology" 🌿🔬 🔗 Read it here: academic.oup.com/gigascience/... #OpenScience @galaxyproject.bsky.social

☁️🦠 How do clouds shape airborne microbes? Our new Biogeosciences study shows that clouds promote #microbial metabolic activity & influence stress responses, potentially shaping microbial #diversity & biogeochemical cycles. 🔗 Paper: bg.copernicus.org/articles/22/... (1/🧵)

1/ Hey y'all, I'm excited to share my latest paper, which is out now in PNAS! We introduce FAVA, a statistical framework to measure compositional variability across microbiome samples. If you want to measure variability across a stacked bar plot, FAVA is for you! Paper: doi.org/10.1073/pnas...

📢🚨 Recrutement d'un Chargé de Gestion Admin & Financière pour renforcer le pôle gestion de l'unité! 📍 Villejuif (94), télétravail possible / 💼 CDD de 18 mois 🔎 emploi.cnrs.fr/Offres/CDD/U... #emploi #gestion #recrutement #CNRS @cnrs-idf-villejuif.bsky.social @sfbi.fr

Big news: we are setting up a new non-profit organization to run bioRxiv and medRxiv. It's called openRxiv [no it's not a new preprint server; it's dedicated organization to oversee the servers] openrxiv.org 1/n

🗓️ Join us for a webinar on March 26, 1PM EDT where we will discuss functionality of https://BRC-Analytics as well as improvements to Galaxy as a whole, workflows as a primary topic. See https://galaxyproject.org/events/2025-03-26-brc-galaxy-webinar/ for more information. ##UseGalaxy ##NIAID ##BRC

Women in research need the credit & recognition they deserve for the amazing contributions they make. Nature Awards for Inspiring Women in Science are open for applications - take a look 👇🏻 & help spread the word #WomeninSTEM #AcademicSky 🧪 @natureportfolio.nature.com www.nature.com/immersive/in...

PPanGGOLiN is now available on Galaxy! usegalaxy.fr/root?tool_id... A huge thanks to Thomas Lacroix, Romane Libouban and @bebatut.bsky.social

The Freiburg Galaxy Team is happy to announce this year's European Galaxy Days https://galaxyproject.org/events/2025-10-01-egd2025/ . Please mark you calendar: October 1st to 3rd We are looking forward seeing you in Freiburg ! ##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC

1/9 🚨 New preprint alert! Frustrated by strange results with your metagenomic data? Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions! 🔗 doi.org/10.1101/2025...

➡️ M Björn GRÜNING sera #keynote speaker à #JOBIM2025 Il nous vient d'Allemagne, du département d'Informatique de l'Université de Freiburg. 💡 Si les workflows, la reproductiblité et la science ouverte vous intéressent, venez l'écouter et le rencontrer en Juillet à Bordeaux, pour #JOBIM2025 !

New (short) preprint, about our BeeBiome portal: https://ecoevorxiv.org/repository/view/8402/ #bioinformatics #microbiome #bees

New #MicrobiomeDigest is OUT microbiomedigest.com/2025/01/16/j... • Enterobacteriaceae in the human gut / @alexmsalmeida.bsky.social • microGalaxy / @bebatut.bsky.social • bacterial vaginosis /‬ @mikeusyk.bsky.social • invitation for the next week @microbiomevif.bsky.social & more. Happy 2025!

Credit where it’s due: GTN Reviewers in the spotlight We would like to recognise and thank all of the reviewers who have contributed. Today, we are highlighting your efforts across every learning material in the GTN https://training.galaxyproject.org/training-material/news/2024/12/02/reviewing.html

Q: What are you doing 29th Jan 2025 at 15:30 GMT❓ A: Attending the first @ensembl.bsky.social webinar of 2025❗ This is your chance to try the new Ensembl "beta" website and provide feedback. 🧬🖥️ 👉 Register today at tinyurl.com/4bb4m8e4

🧬🔍There are 50 petabases of freely-available DNA sequencing data. We introducing Logan Search which allows you to search for any DNA sequence in minutes, bringing Earth’s largest genomic resource to your fingertips. 🏔️ logan-search.org 🏔️ #Genomics #Bioinformatics #OpenScience