📊 Explore the latest from Bioinformatics Advances: "Fast phenotype simulation for genotype representation graphs"  Read the full paper here: https://doi.org/10.1093/bioadv/vbag040 Authors include: @aprilwei.bsky.social

🧬 Just out in Bioinformatics Advances: "GeneSNAKE: A Python package for simulation of gene regulatory networks and perturbation-induced expression data" Full article available: https://doi.org/10.1093/bioadv/vbag039

📊 Explore the latest from Bioinformatics Advances: "A network-guided penalized regression with application to proteomics data"  Full article available: https://doi.org/10.1093/bioadv/vbag038

🧬 Explore the latest from Bioinformatics Advances: "DeepCE: a deep learning framework for correlation-enhanced gene regulatory network inference in single-cell RNA sequencing data".  Full article available: https://doi.org/10.1093/bioadv/vbag033 Authors include: @thaddeuswu.bsky.social

📊 Explore the latest from Bioinformatics Advances: “MRDviz: An integrated platform for interactive visualization and joint simulation of minimal residual disease trajectories and associated survival outcomes”.  Full article available: https://doi.org/10.1093/bioadv/vbag029

🧠 Explore the latest from Bioinformatics Advances: “Age Effect Explorer: A Shiny application to browse and visualize tissue-specific age-related gene expression changes” Explore the full study: https://doi.org/10.1093/bioadv/vbag026

🧬 Explore the latest from Bioinformatics Advances: “The power and limits of predicting inter-protein exon-exon interactions using protein 3D structures” Full article available: https://doi.org/10.1093/bioadv/vbag032

🌾Now published in Bioinformatics Advances: "Benchmarking methods for genome annotation using Nanopore direct RNA in a non-model crop plant" Full article available: https://doi.org/10.1093/bioadv/vbag030 Authors include: @kgagalova.bsky.social

🧬 Explore the latest from Bioinformatics Advances: "Cell type annotation using large language models (LLMs) and CytoAnalyst" Full article available: https://doi.org/10.1093/bioadv/vbag001

📊 Explore the latest from Bioinformatics Advances: “InspectorORF: A tool for visualising Ribo-Seq and additional genomic or transcriptomic data” Read the full paper here: https://doi.org/10.1093/bioadv/vbag031 Authors include: @evol-molly.bsky.social

🧬 Explore the latest from Bioinformatics Advances: “Transcriptional and epigenetic regulation of Ca2+-signaling genes in hepatitis B-derived hepatocellular carcinoma and their association with the cancer hallmarks”  Full article available: https://doi.org/10.1093/bioadv/vbaf331

🤖 Now published in Bioinformatics Advances: "Empowering biological knowledgebases: Advances in human-in-the-loop AI-driven literature curation" Read the full paper here: https://doi.org/10.1093/bioadv/vbag028 Authors include: @matt.jeffry.es, @matthiasblum.bsky.social, @raulrod.bsky.social

🔬 Just out in Bioinformatics Advances: "CaRinDB: An integrated database of common cancer mutations and residue interaction network parameters" Explore the full study: https://doi.org/10.1093/bioadv/vbaf313

🧬 Now published in Bioinformatics Advances: "pygenstrat: A Python package for EIGENSTRAT data processing" by @dilekopter.bsky.social Full article available: https://doi.org/10.1093/bioadv/vbag022

🔬 Explore the latest from Bioinformatics Advances: "HDAnalyzeR: Streamlining data analysis for biomarker research" Read the full paper here: https://doi.org/10.1093/bioadv/vbag020  Authors include: @buenoalvez.bsky.social

🤖 Now published in Bioinformatics Advances: "GPTBioInsightor – Leveraging LLMs for transparent scRNA-Seq cell type annotations".  Read the full paper here:

🔗Just out in Bioinformatics Advances: "Sketchbook: Logical model inference from Boolean network sketches".  Explore the full study: https://doi.org/10.1093/bioadv/vbag014

⏰ Explore the latest from Bioinformatics Advances: "PyCycleBio: Modelling non-sinusoidal-oscillator systems in temporal biology".  The full article is available here: https://doi.org/10.1093/bioadv/vbag018  Authors include: @gobletcellguy.bsky.social, @dbojar.bsky.social

📊 Now published in Bioinformatics Advances: "sigscores: Summary scores for molecular signatures in R" Read the full paper here: https://doi.org/10.1093/bioadv/vbag021

🧬 Just out in Bioinformatics Advances: "XhetRel: A pipeline for X heterozygosity and relatedness analysis of sequencing data"  Full article available: https://doi.org/10.1093/bioadv/vbag002

🧬 Just out in Bioinformatics Advances: "OMAnnotator: A novel approach to building an annotated consensus genome sequence".  Full article available: https://doi.org/10.1093/bioadv/vbag015  Authors include: @dessimoz.bsky.social, @whynevers.bsky.social

🦠 Explore the latest from Bioinformatics Advances: "cAMRah: A scalable and portable workflow for harmonized antimicrobial resistance gene prediction from bacterial genomes".  Read the full paper here: https://doi.org/10.1093/bioadv/vbag017

🌾 Now published in Bioinformatics Advances: "Functional annotation of novel heat stress-responsive genes in rice utilizing public transcriptomes and structurome".  Explore the full study: https://doi.org/10.1093/bioadv/vbag013 Authors include: @sorayone56.bsky.social

📊 Just out in Bioinformatics Advances: "SPRM: Spatial proteomics resource for multiplexed images"  Full article available: https://doi.org/10.1093/bioadv/vbag019

🔬 Explore the latest from Bioinformatics Advances: "LipidLocator: An open source Shiny web application for spatial lipidomics".  Read the full paper here: https://doi.org/10.1093/bioadv/vbag012 Authors include: @pratarora.bsky.social, @nadiamercader.bsky.social

🗺️ Now published in Bioinformatics Advances: "Discovering paracrine regulators of cell type composition from spatial transcriptomics using SPER".  Explore the full study: https://doi.org/10.1093/bioadv/vbag011

🧠 Explore the latest from Bioinformatics Advances: “Multi-view deep learning of highly multiplexed imaging data improves association of cell states with clinical outcomes”.  Find the full study at https://doi.org/10.1093/bioadv/vbag010 Authors include: @kieranrcampbell.bsky.social

🧬 Just out in Bioinformatics Advances: "FRAME: Fast reference-based ancestry makeup estimation tool".  Full article available: https://doi.org/10.1093/bioadv/vbag006

🧬 Now published in Bioinformatics Advances: "CanDrivR-CS: A cancer-specific machine learning framework for distinguishing recurrent and rare variants".  Read the full paper here: https://doi.org/10.1093/bioadv/vbag008  Authors include: @tomrgaunt.bsky.social

🔬 Explore the latest from Bioinformatics Advances: "VST-DAVis: An R Shiny application and web-browser for spatial transcriptomics data analysis and visualization"  Read the full paper here: https://doi.org/10.1093/bioadv/vbag007

🧬 Just out in Bioinformatics Advances: "ChromoMapper: A new tool to quickly compare large genome assemblies"  Full article available: https://doi.org/10.1093/bioadv/vbag005

🦠 Now published in Bioinformatics Advances: "CoV-UniBind: A Unified Antibody Binding Database for SARS-CoV-2"  Find the full paper here: https://doi.org/10.1093/bioadv/vbaf328

🧪 Explore the latest from Bioinformatics Advances: "EC-Bench: A benchmark for Enzyme Commission number prediction."  Read the full paper here: https://doi.org/10.1093/bioadv/vbag004

🍎 Just out in Bioinformatics Advances: "The Nutrition Toolbox permits in silico generation, analysis, and optimisation of personalised diets through metabolic modelling."  Full article available: https://doi.org/10.1093/bioadv/vbaf325  Authors include: @inesthiele.bsky.social

🧬 Now published in Bioinformatics Advances: "Pipeasm: A tool for automated large chromosome-scale genome assembly and evaluation."  Explore the full study: https://doi.org/10.1093/bioadv/vbaf326

📊 Explore the latest from Bioinformatics Advances: "ggplotAgent: A self-debugging multi-modal agent for robust and reproducible scientific visualization."  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf332

⚡Now published in Bioinformatics Advances: "zelll: A fast, framework-free, and flexible implementation of the cell lists algorithm for the Rust programming language."  Full article available: https://doi.org/10.1093/bioadv/vbaf330

🧬 Just out in Bioinformatics Advances: "Machine learning can distinguish orphans that have resulted from sequence divergence beyond recognition."  Read the full paper here at https://doi.org/10.1093/bioadv/vbaf324

🤖 Now published in Bioinformatics Advances: "REDAC: RNA-seq expression data analysis chatbot."  Explore the full study: https://doi.org/10.1093/bioadv/vbaf321 Authors include: @annecmg.bsky.social

🔬 Explore the latest from Bioinformatics Advances: "Fluoro-forest: A random forest workflow for cell type annotation in high-dimensional immunofluorescence imaging with limited training data."  Full article available: https://doi.org/10.1093/bioadv/vbaf320  Authors include: @huyqdinh.bsky.social

🧬 Just out in Bioinformatics Advances: "Prompt-to-Pill: Multi-agent drug discovery and clinical simulation pipeline."  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf323

🏥 Now published in Bioinformatics Advances: "IHIT-BED: An interpretable transformer approach using unbiased hematology analyzer impedance data for early identification of bacteremia in emergency department."  Full article available: https://doi.org/10.1093/bioadv/vbaf322

🔬 Now published in Bioinformatics Advances: "Beyond synthetic lethality in large-scale metabolic and regulatory network models via genetic minimal intervention sets"  Find the full article here: https://doi.org/10.1093/bioadv/vbaf319

🌿 Just out in Bioinformatics Advances: "Computational identification of Azadirachta indica compounds targeting trypanothione reductase in Leishmania infantum"  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf318

📊 Now published in Bioinformatics Advances: "Perspectives in Computational Mass Spectrometry: Recent developments and key challenges”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf301 Authors include: @lindsaykpino.com, @okohlbacher.bsky.social

🔬 Now published in Bioinformatics Advances: “DCGAT-DTI: Dynamic Cross-Graph Attention Network for Drug-Target Interaction Prediction”.   Full article available at https://doi.org/10.1093/bioadv/vbaf306

🧪 Now published in Bioinformatics Advances: "SCOT+: A comprehensive software suite for single-cell alignment using optimal Transport"    Read the full paper here: https://doi.org/10.1093/bioadv/vbaf314  Authors include: @pinard.bsky.social

📊 Explore the latest from Bioinformatics Advances: “Data-based clustering in prediction of cervical cancer DNA methylation using pan-cancer genetic and clinical data.”   Find the full article at https://doi.org/10.1093/bioadv/vbaf316

🔢 Just out in Bioinformatics Advances: “genCRC32: Collision-free CRC32 based hashing of DNA sequences”   Full article available:  https://doi.org/10.1093/bioadv/vbaf315

🧬 Explore the latest from Bioinformatics Advances: “Removing array-specific batch effects in GWAS mega-analyses by applying a two-step imputation workflow.”  Full article available at https://doi.org/10.1093/bioadv/vbaf317