🌉 New from Bioinformatics Advances: “Bridging worlds: Connecting glycan representations with glycoinformatics via universal input and a canonicalized nomenclature.”  Full article available: https://doi.org/10.1093/bioadv/vbaf310 Authors include: @romanjoeres.bsky.social, @dbojar.bsky.social

💻 Now published in Bioinformatics Advances: “Prompt-based bioinformatic pipeline generation for a multi-step metaviral workflow.”  Explore the full study: https://doi.org/10.1093/bioadv/vbaf308 Authors include: @rocknmicrobe.bsky.social

Season’s greetings from Bioinformatics Advances!  This has been a year of growth, with more than 600 submissions. We’re grateful to our editors, authors, and reviewers for their contributions and look forward to advancing computational biology together in 2026.

🧬 Just out in Bioinformatics Advances: “Omics BioAnalytics: An RShiny application for multimodal biomarker panel discovery and assessment”  Full article available at https://doi.org/10.1093/bioadv/vbaf307

📊 Now published in Bioinformatics Advances: “Integrative analysis and imputation of multiple data streams via deep Gaussian processes.”   Explore the full study at https://doi.org/10.1093/bioadv/vbaf305  Authors include: @aliakbars.id, @drsamray.bsky.social

🧪 Now published in Bioinformatics Advances: “Colony: A framework for reproducible and easy-to-use data analysis pipelines for biomedical research with Singularity containers.”  Explore the full study at https://doi.org/10.1093/bioadv/vbaf304

🦠 Now published in Bioinformatics Advances: “AI-powered rapid detection of multidrug-resistant Klebsiella pneumoniae with informative peaks of MALDI-TOF MS”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf303

🧬 Just out in Bioinformatics Advances: “tskit arg visualizer: Interactive plotting of ancestral recombination graphs.”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf302 Authors include: @kitchensjn.bsky.social, @yanwong.bsky.social

🧬 Explore the latest from Bioinformatics Advances: "geomeTriD: A Bioconductor package for interactive and integrative visualization of 3D structural model with multi-omics data"  Full article available: https://doi.org/10.1093/bioadv/vbaf299

🌳 Now published in Bioinformatics Advances: "Performance assessment of phylogenetic inference tools using PhyloSmew"  Explore the full study: https://doi.org/10.1093/bioadv/vbaf300

🔒 Just out in Bioinformatics Advances: "Integrating differential privacy into federated multi-task learning algorithms in dsMTL"  Full article available:  https://doi.org/10.1093/bioadv/vbaf298

🧬 Explore the latest from Bioinformatics Advances: "PseudoChecker2 and PseudoViz: Automation and visualization of gene loss in the Genome Era”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf202

🔬 Just out in Bioinformatics Advances: "SNPraefentia: A toolkit to prioritize microbial genome variants linked to health and disease” Read the full paper here: https://doi.org/10.1093/bioadv/vbaf297

🧬 Now published in Bioinformatics Advances: "Snappy: Fast identification of DNA methylation motifs based on Oxford Nanopore reads"   Full article available: https://doi.org/10.1093/bioadv/vbaf296

🔬 Now published in Bioinformatics Advances: “Adding highly variable genes to spatially variable genes can improve cell type clustering performance in spatial transcriptomics data”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf285  Authors include: @lgarmire.bsky.social

🧬 Now published in Bioinformatics Advances: “PSQAN: A pipeline to prioritise novel and biologically relevant transcripts from long-read RNA sequencing”  Explore the full study at https://doi.org/10.1093/bioadv/vbaf293

🧪 Now published in Bioinformatics Advances: “SiaScoreNet: A Siamese neural network-based model integrating prediction scores for HLA-peptide interaction prediction.”  Read the full paper at https://doi.org/10.1093/bioadv/vbaf248

🧬 Just out in Bioinformatics Advances: “SurprisalAnalysis: An open-source software for information-theoretic analysis of gene expression.”  Explore the full study at https://doi.org/10.1093/bioadv/vbaf291

🌱 Explore the latest from Bioinformatics Advances: “MxlPy: Python package for mechanistic learning and hybrid modelling in life science.”  Full article available at https://doi.org/10.1093/bioadv/vbaf294

🧪 Now published in Bioinformatics Advances: “GDC cohort copilot: An AI copilot for curating cohorts from the Genomic Data Commons.”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf295

🧬Explore the latest from Bioinformatics Advances: “Ish: SIMD and GPU accelerated local and semi-global alignment as a CLI filtering tool.”   Read the full paper here: https://doi.org/10.1093/bioadv/vbaf292 Author: @ducktapeprogrammer.bsky.social

🗂️ Explore the latest from Bioinformatics Advances: “SeqManager: A web-based tool for efficient sequencing data storage management and duplicate detection.” Explore the full study: https://doi.org/10.1093/bioadv/vbaf282 Authors include: @serialchiper.bsky.social

🧮 Just out in Bioinformatics Advances: “FroM Superstring to Indexing: A space-efficient index for unconstrained k-mer sets using the Masked Burrows-Wheeler Transform (MBWT)”  Full article available: https://doi.org/10.1093/bioadv/vbaf290  Authors include: @pavelvesely.bsky.social, @brinda.eu

💊 Explore the latest from Bioinformatics Advances: “Unveiling novel drug-target couples: An empowered automated pipeline for enhanced virtual screening using AutoDock Vina.”   Read the full paper here: https://doi.org/10.1093/bioadv/vbaf267

🧬 Just out in Bioinformatics Advances: “Exploring SARS-CoV-2 spike protein mutations through genetic algorithm-driven structural modeling.”  Full article available: https://doi.org/10.1093/bioadv/vbaf288

🔬Now published in Bioinformatics Advances: “KSMoFinder: Knowledge graph embedding of proteins and motifs for predicting kinases of human phosphosites.” Read the full paper here: https://doi.org/10.1093/bioadv/vbaf289

🧬 Just out in Bioinformatics Advances: “mhn: A Python package for analyzing cancer progression with Mutual Hazard Networks.”  Explore the full study: https://doi.org/10.1093/bioadv/vbaf283 Authors include: @cbg.ethz.ch

🧫 Explore the latest from Bioinformatics Advances: “BacExplorer: An integrated platform for de novo bacterial genome annotation.” Full article available: https://doi.org/10.1093/bioadv/vbaf281

🧪 Now published in Bioinformatics Advances: “Are the tools fit for purpose? Network inference algorithms evaluated on a simulated lipidomics network.”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf286 Authors include: @rnaprof.bsky.social

🧫 Just out in Bioinformatics Advances: “GlobDB: A comprehensive species-dereplicated microbial genome resource.”  Explore the full study: https://doi.org/10.1093/bioadv/vbaf280

🌍 Now published in Bioinformatics Advances: “ntRoot: Computational inference of human ancestry at scale from genomic data.”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf287

🦠 Now published in Bioinformatics Advances: “BEREN: A bioinformatic tool for recovering giant viruses, polinton-like viruses, and virophages in metagenomic data.”  Full article available: https://doi.org/10.1093/bioadv/vbaf284

🧠 Now published in Bioinformatics Advances: “Matrix-based vector representations in neural networks for classifying molecular biology data.”   Read the full paper here:

🧩 Explore the latest from Bioinformatics Advances: “ProCaliper: Functional and structural analysis, visualization, and annotation of proteins.” Full article available: https://doi.org/10.1093/bioadv/vbaf275  Authors include: @genomesevolve.bsky.social, @songfeng.bsky.social

🧬 Just out in Bioinformatics Advances: “pyALRA: Python implementation of low-rank zero-preserving approximation of single cell RNA-seq.”  Explore the full study: https://doi.org/10.1093/bioadv/vbaf279

💊 Now published in Bioinformatics Advances: “WebCMap: An R package for high-throughput connectivity analysis within the CMap framework.”    Read the full paper here: https://doi.org/10.1093/bioadv/vbaf278

🧫 Just out in Bioinformatics Advances: “zAMP and zAMPExplorer: Reproducible scalable amplicon-based metagenomics analysis and visualization.” Explore the full study: https://doi.org/10.1093/bioadv/vbaf255

🩸 Explore the latest from Bioinformatics Advances: “An interactive mindmap of blood film images for automated malaria diagnosis: a comprehensive metadata repository of available datasets.”  Explore the full study: https://doi.org/10.1093/bioadv/vbaf276

🧬 Just out in Bioinformatics Advances: “CLUES2 Companion: Computational pipelines to estimate, visualize, and date selection on multi-locus sites.” Read the full paper here: https://doi.org/10.1093/bioadv/vbaf277

🧫 Now published in Bioinformatics Advances: “scExplorer: A comprehensive web server for single-cell RNA sequencing data analysis.”   Full article available: https://doi.org/10.1093/bioadv/vbaf273  Authors include: @fvillanelo.bsky.social

🧬 Now published in Bioinformatics Advances: “LSTM-based deep learning model for the discovery of antimicrobial peptides targeting Mycobacterium tuberculosis.” Read the full paper here: https://doi.org/10.1093/bioadv/vbaf274 Authors include: @taanec.bsky.social

🧠 Just out in Bioinformatics Advances: “Deep learning for regulatory genomics: A survey of models, challenges, and applications.” Explore the full study: https://doi.org/10.1093/bioadv/vbaf271

🧩 Explore the latest from Bioinformatics Advances: “CoRTE: A web-service for constructing temporal networks from genotype-tissue expression data.”   Full article available: https://doi.org/10.1093/bioadv/vbaf272

🧠 Now published in Bioinformatics Advances: “PSO-FeatureFusion: A general framework for fusing heterogeneous features via particle swarm optimization.”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf263

🔥 Now published in Bioinformatics Advances: “Shiny-Calorie: A context-aware application for indirect calorimetry data analysis and visualization using R.”    Read the full paper here: https://doi.org/10.1093/bioadv/vbaf270  Authors include: @wachtenlab.bsky.social, @ecsignalmetabolism.bsky.social

💊 Now published in Bioinformatics Advances: “DSA-DeepFM: A dual-stage attention-enhanced DeepFM model for predicting anticancer synergistic drug combinations.”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf269

🧬 Just out in Bioinformatics Advances: “TidyGWAS: A scalable approach for standardized cleaning of genome-wide association study summary statistics.”   Explore the full study: https://doi.org/10.1093/bioadv/vbaf262  Authors include: @joellepasman.bsky.social

🧠 Now published in Bioinformatics Advances: “Gaining insights into Alzheimer’s disease by predicting chromatin spatial organization.”    Read the full paper here: ttps://doi.org/10.1093/bioadv/vbaf268

🧬 Explore the latest from Bioinformatics Advances: “MutSeqR: An open-source R package for standardized analysis of error-corrected next-generation sequencing data in genetic toxicology.”  Full article available: https://doi.org/10.1093/bioadv/vbaf265

🧪 Now published in Bioinformatics Advances: “SUMO: An R package for simulating multi-omics data for methods development and testing.”  Read the full paper here: https://doi.org/10.1093/bioadv/vbaf264