Katie Emelianova
@katieemelianova.bsky.social
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📥 1345
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Marie Curie postdoctoral fellow 📍Vienna transposable elements and plant-microbe symbiosis 🌱🧬🧫
reposted by
Katie Emelianova
The Plant Journal
8 months ago
𝐍𝐞𝐰 𝐢𝐧 𝐓𝐏𝐉 Ecological divergence of sibling allopolyploid marsh orchids is associated with species-specific plasticity and distinct fungal communities 💮
doi.org/10.1111/tpj.70001
by
@katieemelianova.bsky.social
@ViePlantGenom @univienna
@sebiology.bsky.social
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Ecological divergence of sibling allopolyploid marsh orchids is associated with species specific plasticity and distinct fungal communities
This study highlights the role of phenotypic plasticity in the persistence and distribution of sibling allopolyploid marsh orchids (Dactylorhiza majalis s.l.). By examining gene expression and the di...
https://doi.org/10.1111/tpj.70001
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Kidney International
7 months ago
Mitochondrial dysfunction and mitophagy blockade contribute to
#renal
#osteodystrophy
in chronic kidney disease-mineral bone disorder
doi.org/10.1016/j.kint.2025.01.022
@katieemelianova.bsky.social
#OpenAccess
#NephSky
#MedSky
#CKD
#MBD
#chronickidneydisease
#mineralbonedisorder
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Kevin M. Kruse
8 months ago
Whenever you hear someone sneer about scientific research that seems useless to them — “they’re studying the spit of lizards?!” — remind them that’s exactly how we got Ozempic.
globalnews.ca/news/9793403...
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How a Canadian scientist and a venomous lizard helped pave the way for Ozempic - National | Globalnews.ca
In 1984, Dr. Daniel Drucker, an endocrinologist from the University of Toronto, discovered a hormone that helped pave the way for popular diabetes drugs such as Ozempic.
https://globalnews.ca/news/9793403/ozempic-canada-scientist-venomous-lizard-weight-loss/amp/
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Great to see the Norman Wickett give the fanciest of inaugural lectures at the University of Vienna 💅
8 months ago
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Katie Emelianova
Craig MacLean
8 months ago
New pre-print!!! What types of genes end up on plasmids and why? The take home message of this paper is that beneficial genes move from plasmids to chromosome, causing the ecological value of plasmids to decay over time.
www.biorxiv.org/content/10.1...
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Chromosomal capture of beneficial genes drives plasmids towards ecological redundancy
Plasmids are a ubiquitous feature of bacterial genomes, but the evolutionary forces driving genes to become associated with plasmids are poorly understood. To address this problem, we compared the fit...
https://www.biorxiv.org/content/10.1101/2025.01.21.634075v1
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KhongSam Chia
8 months ago
JIC Friday seminar by
@pierremarcdelaux.bsky.social
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Leho Tedersoo
9 months ago
Post-Doc position for 3 years available jointly between University of Tartu (Estonia) and University of Aarhus (Denmark) on soil microbiome and biogeography. Skills required: bioinformatics, metagenome analysis, microbiology Contact:
[email protected]
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Pierre-François Lenne
9 months ago
Excited to share that IBDM (Institut de Biologie du Développement de Marseille) is expanding its research groups this year! A great place for developmental biology and interdisciplinary research located on the beautiful Marseille-Luminy campus! Deadline for applications: March 30th, 2025
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Jeffrey Ross-Ibarra
9 months ago
New!
@jenncoughlan.bsky.social
kindly shared their MIRA NIH award with our github repo. If you have a successful grant app you're willing to share, please contribute!
github.com/RILAB/statem...
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GitHub - RILAB/statements: Successful Job Applications and Grants
Successful Job Applications and Grants. Contribute to RILAB/statements development by creating an account on GitHub.
https://github.com/RILAB/statements
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Jeffrey Ross-Ibarra
10 months ago
I really believe more folks should start off staring at a kinship matrix rather than STRUCTURE, PCA, etc. Such a rich visual of the data.
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Michael Karanicolas
10 months ago
The fact that 41% of Americans have no favorite dinosaur is a national scandal and there should be congressional hearings to get to the bottom of what went wrong.
add a skeleton here at some point
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Katie Emelianova
Rashmi Sasidharan
10 months ago
Our
#hypoxia
FI is online!
@plantphys.bsky.social
featuring this stunning cover image by
@moeabbas.bsky.social
Check out the fantastic lineup of Updates, Topical Review & research articles
@schwarzlanderlab.bsky.social
academic.oup.com/plphys/issue...
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Volume 197 Issue 1 | Plant Physiology | Oxford Academic
Plant Physiology is an international journal devoted to physiology, biochemistry, cellular and molecular biology, genetics, biophysics, and environmental biology of plants
https://academic.oup.com/plphys/issue/197/1
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Derek Thompson
10 months ago
People sometimes make fun of science that sounds stupid and random. Meanwhile, a study of lizard saliva turned into a peptide medication, which was turned into a diabetes medication, which was turned into a GLP1 weight loss drug, that just became the first therapy every approved for … sleep apnea
add a skeleton here at some point
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Megan McDonald
10 months ago
HI old friends! Finally took the leap here to say I have several open positions going in my lab at the moment (and more to come). 1) PhD studentship in collaboration with the Royal Horticultural Society (genomics) 2) Biochemistry Postdoc to understand how Starships move Check out the links below!
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EMBL Events
10 months ago
Hi Bluesky community! 👋 Are you looking forward to 2025 as much as we are? 👀 We just updated our 2025 Annual Poster to include even more events for you to join, so go and have a look! ➡️
s.embl.org/poster-bl
#EMBLEvents
#molecularbiology
#lifesciencetraining
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Marc Somssich
10 months ago
📜 Ectomycorrhizal fungi of Douglas-fir retain newly assimilated carbon derived from neighboring European beech 🧑🔬 Michela Audisio, Jan Muhr, Andrea Polle 📙
@newphyt.bsky.social
🔗
nph.onlinelibrary.wiley.com/doi/10.1111/...
#️⃣
#PlantScience
#Forestry
#Mycorrhiza
#CarbonCapture
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Ectomycorrhizal fungi of Douglas‐fir retain newly assimilated carbon derived from neighboring European beech
Ectomycorrhizal (ECM) fungi distribute tree-derived carbon (C) via belowground hyphal networks in forest ecosystems. Here, we asked the following: (1) Is C transferred belowground to a neighboring...
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.19943
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Katie Emelianova
Daniel Noble
10 months ago
Check out our cool new findings showing how developmental temperature and corticosterone have long term impacts on mitochondrial efficiency that coincide with consistent differences in body size through life! A fantatsic team effort
doi.org/10.1242/jeb....
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From eggs to adulthood: sustained effects of early developmental temperature and corticosterone exposure on physiology and body size in an Australian lizard
Highlighted Article: Incubation temperature and prenatal corticosterone exposure have independent sustained effects, but not interactive effects, on morphological and physiological traits in the delic...
https://doi.org/10.1242/jeb.249234
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I had a great time presenting at the fabulous EcoEvoDevo seminar series at my alma mater Queen Mary University of London, incidentally downstairs from where I sat my biochemistry exam over a decade ago 👶
add a skeleton here at some point
10 months ago
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Ian Denton
10 months ago
Starlings- evening roost. Funnelling down into the reeds on the Somerset levels.
#somerset
#starlings
#ukwildlife
#birds
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Katie Emelianova
Mario Torralba
10 months ago
Job Alert📢! We are looking for a postdoc looking into how to reconcile Food Systems Sustainability and Biodiversity Conservation. Apply to work with us at VU Amsterdam Position for 36 months. Deadline: January 9th. Please apply/ Share
workingat.vu.nl/vacancies/po...
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Vacancy — Postdoc on Reconciling Food Systems Sustainability and Biodiversity Conservation
Are you interested in research that promotes a transformation towards sustainable and regional food systems dominated by agroecological practices, fair value chains, and responsible consumption? Then ...
https://workingat.vu.nl/vacancies/postdoc-on-reconciling-food-systems-sustainability-and-biodiversity-conservation-amsterdam-1127134
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What an absolute treat to return to my undergraduate stomping grounds to give a seminar on my work on the persimmon genus Diospyros 🌱 nostalgia galore!
10 months ago
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Katie Emelianova
Hans Henrik Bruun
10 months ago
Postdoc opportunity: Drivers of biodiversity change across time 🌿 🦅 🌍 Come work with fabulous Naia Morueta-Holme (and a bit with me) 2-year position starting March 1, 2025 Naia's lab page:
lnkd.in/drHQBGdU
Apply here (deadline 5 Jan 2025)
candidate.hr-manager.net/ApplicationI...
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Postdoctoral Researcher on Drivers of Biodiversity Change Across Time at the Section for Biodiversity, Globe Institute
Postdoctoral Researcher on Drivers of Biodiversity Change Across Time at the Section for Biodiversity, Globe Institute, University of Copenhagen We are seeking
https://candidate.hr-manager.net/ApplicationInit.aspx/?cid=1307&departmentId=19217&ProjectId=163086&MediaId=5&SkipAdvertisement=false
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The best presentations are made on a train on the way to give said presentation 🎁
10 months ago
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Philipp Bayer
10 months ago
R targets is the best thing that has ever happened to my projects - the reviewer wants us to substantially change about a third of the input data for my classification paper, so all classifiers had to be rerun (DONE), but all their output had to be reanalysed. All I had to do is targets::tar_make()
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Andrii Tarieiev
10 months ago
Paradox: there are so much talks about genomics of polyploids during recent years (at least 5), but still very few reliable computational instruments to work with them.
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Kory Evans Ph.D
10 months ago
New paper alert 🚨check out our new study in Nature Ecology & Evolution on anglerfish trait evolution led by the fantastic
@lizmillermacroevo.bsky.social
!
www.nature.com/articles/s41...
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Reduced evolutionary constraint accompanies ongoing radiation in deep-sea anglerfishes - Nature Ecology & Evolution
Based on phylogenomic and geometric morphometric analyses of 132 anglerfish species, the authors infer a Cretaceous origin of the clade and show that bathypelagic anglerfish are undergoing rapid pheno...
https://www.nature.com/articles/s41559-024-02586-3
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Yves Van de Peer
11 months ago
www.biorxiv.org/content/10.1...
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The Rise of Polyploids During Environmental Catastrophes
Polyploidy, or whole-genome duplication (WGD), both a strong evolutionary and ecological force and a potential pitfall, occurs extensively across the tree of life, particularly in angiosperms. While p...
https://www.biorxiv.org/content/10.1101/2024.11.22.624806v1
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Katie Emelianova
Ocean Tracking Network
10 months ago
ICYMI 📢 Learn more about a twinning project we're part of—Digital Twin of the Ocean: Animal Tracking (or DTOTrack)—that was recently awarded €2.1m from the European Union Sustainable Blue Economy Partnership to support decision-making & biodiversity conservation in the North Sea
tinyurl.com/8t7tw637
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Tomorrow is the final day to pre-register for ESEB Barcelona 2025 for any fellow evo friends attending! 🦋
eseb2025.com/pre-registra...
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ESEB 2025. Congress of the European Society for Evolutionary Biology. Barcelona. Spain – ESEB 2025. Congress of the European Society for Evolutionary Biology. Barcelona. Spain
https://eseb2025.com/
10 months ago
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Katie Emelianova
Nicolas Mouquet
10 months ago
Updating the
#IUCN
status of marine fish using AI shows that x5 more species are threatened with extinction than previously thought! see our study in Plos Biol with
@nloiseau.bsky.social
👉
doi.org/10.1371/jour...
🔑 This silent extinction affects 12,7% of marine fishes (1337 species) ! 🧪🌐🌍🦤🦑
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Niels Martin Schmidt
10 months ago
Arctic plant-fungus interactions are highly plastic, with major rewiring among interaction partners across variable environmental conditions - read the paper here
www.nature.com/articles/s43...
#Zackenberg
#Arctic
#BioticInteractions
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Arctic plant-fungus interaction networks show major rewiring with environmental variation - Communications Earth & Environment
Fungus-plant interactions in the Arctic are highly pliable and can alter under changing temperature and soil conditions, according to modelling of plant and fungal communities using DNA metabarcoding ...
https://www.nature.com/articles/s43247-024-01902-w
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Katie Emelianova
Jérémy Cours 🌳
11 months ago
First post on Bluesky, let’s share some websites offering many free illustrations for scientific figures 🖼️ 🧪 🌍 :
scidraw.io
bioart.niaid.nih.gov
www.phylopic.org
More well known but very nice though:
www.freepik.com
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SciDraw | Scientific Drawings
SciDraw - an open repository of science drawings
https://scidraw.io
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Katie Emelianova
Stats For Bios
11 months ago
Remember that type 1 and type 2 errors go the same order as the boy who cried wolf. Type 1 - villagers believed there was a wolf (effect) when there wasn't. Type 2 - villagers didn't believe there was a wolf (effect) when there was.
#StatsSky
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Ellinor Alseth
11 months ago
re-posting the potentially best meme I've ever made here, before the other place collapses and it's lost to history
#MicroSky
🦠
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Sally Fryar 🍄💧 🇦🇺 🧬 🔬
11 months ago
The new outline of fungi and fungus-like taxa is out now. Why do we need to do this so often? Because there are so many fungal species and only about 5-10% have descriptions. New genera, families etc are frequently being added to the tree. 🧪 🌍
#fungi
#mycosky
www.mycosphere.org/pdf/MYCOSPHE...
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https://www.mycosphere.org/pdf/MYCOSPHERE_15_1_25.pdf
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Carl T. Bergstrom
11 months ago
A hill I will die on
add a skeleton here at some point
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Liz Koziol
11 months ago
🌾🌱🧪🦠🌍 New study out today! Please share! Meta-analysis of 302 globally sourced AMF inoculant trials. Only 12% of commercial products both boosted crop growth and had effective root colonization by mycorrhizal fungi.
#soilscience
#PlantScience
#mycosky
nph.onlinelibrary.wiley.com/doi/10.1111/...
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Meta‐analysis reveals globally sourced commercial mycorrhizal inoculants fall short
Click on the article title to read more.
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.20278
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Question for people interviewing for international TT jobs in academia: is it typical to cover your own travel costs or does the interviewing institution sometimes contribute?
11 months ago
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Asaf Levy
11 months ago
We found something interesting in the evolution of plant microbiota. It is under review and we published the preprint today. Avi Bograd from my lab analyzed the genomes of 38,912 bacteria and identified a clear depletion of all MGE types in plant-associated bacteria vs. non-plant associated bacteria
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Throwback to a few weeks ago where I went straight from fieldwork in a bog to shopping in Paris before my flight home 💅
11 months ago
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Megan Dennis
about 1 year ago
Call for papers Special Issue: Functional and Adaptive Effects of Genomic Structural Variation
go.nature.com/3Z8xdOQ
Submission deadline: 1st March 2025 Guest editors
@evobioclio.bsky.social
@ellenleffler.bsky.social
Omer Gokcumen, & myself Reach out to any of us if you have questions!
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Special Issue: Functional and Adaptive Effects of Genomic Structural Variation
See more information on the new Heredity special issue on functional and adaptive effects of genomic structural variation.
https://go.nature.com/3Z8xdOQ
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Katie Emelianova
Josh Luke Davis 🏳️🌈
11 months ago
well, here it is lads after combing through some 1,400 records, it looks like the slender-billed curlew is indeed extinct and the last known photo taken in 1995 was probably at the point it slipped beneath the waves 🦉🧪
www.nhm.ac.uk/discover/new...
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The slender-billed curlew is declared extinct
This is the first mainland European bird declared extinct in 500 years.
https://www.nhm.ac.uk/discover/news/2024/november/the-slender-billed-curlew-is-declared-extinct.html
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I did my first PCR in 8 years last week and wowee after a long stint of mainly computational work I forgot how delightful it is to stand up and move about at work 🤠
11 months ago
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Katie Emelianova
Tue Sparholt Jørgensen
over 1 year ago
New manuscript is out on a scale new to me: We sequenced >1000 genomes, mostly complete, of filamentous Actinobacteria. With these, we can start asking questions like "How long are Streptomyces terminal inverted repeats" and get answers like this 🧬🖥️
#secmet
.
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Brooke Jarvis
11 months ago
Today in relatable science: Gulls making a mysterious daily trip that turned out to be to a potato chip factory
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Karl Schmid
11 months ago
A short explainer on youtube on our contribution to the EU H2020 project INVITE (
www.h2020-invite.eu
) on using molecular markers in plant variety protection
www.youtube.com/watch?v=dCdA...
#plantscience
#INVITE
#plantbreeding
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Karl Schmid (University of Hohenheim) on how molecular markers can facilitate DUS testing
YouTube video by INVITE Project
https://www.youtube.com/watch?v=dCdANoEuAA0
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Katie Emelianova
Zamin Iqbal
11 months ago
Latest data from AllTheBacteria described in our updated preprint. All illumina WGS bacterial+archaeal sequence data to Aug 2024 consistently assembled, QC, and now AMR profiling. That's 2.4 million genomes. Gene annotations almost done , coming next. Please use!
www.biorxiv.org/content/10.1...
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AllTheBacteria - all bacterial genomes assembled, available and searchable
The bacterial sequence data publicly available at the global DNA archives is a vast source of information on the evolution of bacteria and their mobile elements. However, most of it is either unassemb...
https://www.biorxiv.org/content/10.1101/2024.03.08.584059v3
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Felix Martinez
11 months ago
Sweeter tomatoes can be produced without yield penalty. Yet again, wild species had the answer.
@natureplants.bsky.social
www.nature.com/articles/s41...
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Releasing a sugar brake generates sweeter tomato without yield penalty - Nature
A study identifies two genes that act as brakes controlling the sugar content of tomatoes and demonstrates their manipulation to generate sweeter tomatoes without affecting the fruit size and yield.
https://www.nature.com/articles/s41586-024-08186-2
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I’m really excited to attend the transposon conference hosted by
@geneticssocietyuk.bsky.social
next week 🧬 who else is going?
11 months ago
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Katie Emelianova
Clément Goubert
12 months ago
🎉 Our
#GraffiTE
paper is out!!!
t.co/TmoSL3WQ1P
If you are interested in
#Transposon
insertion polymorphism, this is for you!
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https://www.nature.com/articles/s41467-024-53294-2
https://t.co/TmoSL3WQ1P
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