KhongSam Chia
@khongsamchia.bsky.social
📤 999
📥 990
📝 19
Postdoc at
@mpi-bio-fml.bsky.social
@WeigelWorld . MPMI | Arabidopsis | NLRs
reposted by
KhongSam Chia
Laurie Belcher
about 13 hours ago
The new OrthoFinder paper is out now! In this new work, we introduce major advances in accuracy and scalability, allowing analysis on much larger datasets
www.nature.com/articles/s41...
github.com/OrthoFinder/...
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OrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability - Nature Methods
The updated OrthoFinder v3 software boosts accuracy and scalability in phylogenetic orthology inference with massive and diverse datasets.
https://www.nature.com/articles/s41592-026-03126-6
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KhongSam Chia
Sjon Hartman
1 day ago
Still time to apply for this exciting postdoc position on molecular ecology of forest trees (and epigenetic memory) with
@katrinheer.bsky.social
,
@kleinevehnlab.bsky.social
and myself. Consider joining us!
#plantscience
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KhongSam Chia
Altegoerlab
about 15 hours ago
As promised: We have an open 2-year postdoc position in my lab at HHU Düsseldorf, starting September 2026. Come join us and help pioneering structural biology of fungal GPCRs! More about the lab:
altegoerlab.de
Apply here:
karriere.hhu.de/index.php?ac...
Please share with interested candidates!
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KhongSam Chia
Hiro Nakagami
about 16 hours ago
Here is our contribution to this lovely special issue. Together with talented PhD students Gabriel and Mung Hsia, we discussed when and how pattern-triggered immunity had been established in plants.
doi.org/10.1016/j.cu...
@watertoland.bsky.social
@mpipz.bsky.social
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KhongSam Chia
Remco Stam
about 17 hours ago
Host killing by necrotrophs is really complex. Using a 29-gene knockout series in Botrytis cinerea, we show that removing nearly all known cell death-inducing proteins and major phytotoxins is not sufficient to prevent host necrosis. Check out the paper:
www.biorxiv.org/content/10.6...
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Deletion of 29 cell death-inducing proteins and phytotoxin biosynthetic genes does not completely abolish virulence of Botrytis cinerea
Botrytis cinerea is a necrotrophic plant pathogen with an extremely wide host range. During invasion, the fungus induces rapid host cell death and proliferates in the necrotic tissue. The mechanisms o...
https://www.biorxiv.org/content/10.64898/2026.06.04.730115v1
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KhongSam Chia
about 20 hours ago
TIRs are key regulators of plant immunity, but the role of conserved TIR-only proteins has remained unclear. Here, we compare TIR-only proteins from Arabidopsis and barley and show that they share a conserved role in plant immunity.
www.biorxiv.org/content/10.6...
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Conserved TIR-only proteins drive transcriptional defense and basal immunity in dicot and monocot plants
Toll/interleukin-1/resistance (TIR) domain NADase enzymes signal in plant immunity by producing ribosylated nucleotide second messengers which activate EDS1 dimer-helper NLR pathways to restrict patho...
https://www.biorxiv.org/content/10.64898/2026.06.07.730676v1
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KhongSam Chia
bioRxiv Plant Bio
1 day ago
Conserved TIR-only proteins drive transcriptional defense and basal immunity in dicot and monocot plants
https://www.biorxiv.org/content/10.64898/2026.06.07.730676v1
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KhongSam Chia
Sarah Courbier
1 day ago
🚨Job alert 🚨 There is still some time to apply! Join us as a W3 professor in sunny Freiburg and take part in our bright plant science community! Looking forward to meeting you! :)
#plantscijobs
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KhongSam Chia
Ralf Reski
1 day ago
W 3 Professorship for Plant Biotechnology. Freiburg, Germany. Apply if you’d like to be my successor.
#plantscijobs
#plantscijob
#plantsciencejob
uni-freiburg.de/en/job/00005...
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University of Freiburg
https://uni-freiburg.de/en/job/00005002/
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KhongSam Chia
Clémence Marchal
1 day ago
Hiring: Junior Group Leader (f) in Protein Science — CRC 1664 SNP2Prot, MLU Halle. Lead your own group + budget, funded PhD, world-class protein-structure facilities. 5 yrs, E14. Apply by 7 July 2026.
snp2prot.uni-halle.de
#ProteinScience
#SNP2Prot
#AcademicJobs
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KhongSam Chia
Thorsten Langner
1 day ago
Please repost and forward this opportunity to interested female biochemists/structural biologists. 👏
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KhongSam Chia
Thorsten Langner
1 day ago
‼️Job alert📢🚨 We are recruiting a Junior Group Leader (f) in Protein Science at Martin Luther University Halle-Wittenberg, jointly hosted by the Institute of Biochemistry and Biotechnology and our Collaborative Research Centre CRC 1664 "Plant Proteoform Diversity – SNP2Prot."
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KhongSam Chia
bioRxiv Plant Bio
4 days ago
A co-proteomic view of metabolite-specific interactions in the Botrytis cinerea-Arabidopsis pathosystem
https://www.biorxiv.org/content/10.64898/2026.06.05.730517v1
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KhongSam Chia
Sophien Kamoun
4 days ago
Second face: AVRcap1b blocks the stepwise assembly of a helper NLR resistosome. Same effector, different trick. Very sneaky potato blight business.
www.science.org/doi/10.1126/...
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A plant pathogen effector blocks stepwise assembly of a helper NLR resistosome
An RXLR-LWY effector from Phytophthora infestans interferes with helper NLR resistosome assembly to suppress plant immunity.
https://www.science.org/doi/10.1126/sciadv.aeb1931
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reposted by
KhongSam Chia
Sophien Kamoun
4 days ago
You saw them first on @bioRxiv. Now they’re out in print—back-to-back. Meet AVRcap1b: the two-faced immunosuppressor from the potato blight pathogen Phytophthora infestans.
www.science.org/doi/10.1126/...
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A potato late blight pathogen effector interacts with ENTH-domain protein TOL9a and an activated helper NLR to suppress immunity
A plant pathogen effector suppresses an activated helper NLR via a host ENTH domain–containing protein, NbTOL9a.
https://www.science.org/doi/10.1126/sciadv.aea4500
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reposted by
KhongSam Chia
Césarée Morier-Gxoyiya
7 days ago
Big thanks to co-authors Dan Bebber, Diane Saunders and
@nrpdtp.bsky.social
for the support. Special thank you to
@hsuanpai.bsky.social
for the beautiful illustration of the wheat stem rust complex life cycle
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KhongSam Chia
Johana Misas Villamil
7 days ago
📢 new preprint! How do commensal bacteria establish themselves on plant roots despite plant immunity? We identify Cpi1, a conserved membrane-anchored protease inhibitor in Pseudomonas that promotes early root colonization and modulates microbial community assembly.
www.biorxiv.org/cgi/content/...
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KhongSam Chia
Thomas Ott
7 days ago
Many thanks to Yue Rui and
@josedinneny.bsky.social
for generously involving us into this great story. Amazing appreciation of the work of
@nikolajabel.bsky.social
. Congratulations to all authors.
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KhongSam Chia
Sjon Hartman
7 days ago
@carlos-rc.bsky.social
together with
@rimchaudhury15.bsky.social
designed this figure describing some of the key temporal signalling events during a flooding event that were shown to contribute to differential stress resilience 🌱🌊
#plantscience
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KhongSam Chia
Sjon Hartman
7 days ago
Excited to see our
#plantscience
review published in
@jxbotany.bsky.social
! It really captures our lab’s perspective on how plants use spatiotemporal signaling under environmental contexts when floods occur, to coordinate acclimation responses and achieve stress tolerance.
doi.org/10.1093/jxb/...
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Anticipate, acclimate, recuperate and remember: How spatiotemporal signal integration controls flooding stress resilience in plants
Abstract. Flooding is a major abiotic stress that restricts terrestrial plant growth and survival. A plant tissue’s ability to avoid or sustain critical ox
https://doi.org/10.1093/jxb/erag262
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KhongSam Chia
Max Planck Institute of Molecular Plant Physiology 🌱🧪
8 days ago
📢
#Postdoc
opportunity! We're looking for a Postdoc to join the lab of
@carogutj.bsky.social
at the
@mpi-mp-potsdam.bsky.social
(Potsdam, Germany). Research focus:
#molecular
mechanisms of nutrient exchange in arbuscular
#mycorrhiza
#symbiosis
📩 See
www.mpimp-golm.mpg.de/2287446/karr...
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Career
https://www.mpimp-golm.mpg.de/2287446/karriere
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KhongSam Chia
Fay-Wei Li
8 days ago
Thank you BTI and Cornell for the fantastic support, collaboration, and mentorship over the past 10 years. Now we are starting a new journey at Duke Biology!!!
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KhongSam Chia
MPI for Biology Tübingen & Friedrich Miescher Laboratory
9 days ago
The German National Academy of Sciences Leopoldina has elected Susana Coelho as a new member. Many congratulations!
www.bio.mpg.de/523647/susan...
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Susana Coelho appointed as a member of the Leopoldina
https://www.bio.mpg.de/523647/susana-coelho-appointed-as-a-member-of-the-leopoldina?c=57217
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KhongSam Chia
Sjon Hartman
11 days ago
Dear
#plantscience
friends, we're looking to recruit a new colleague at
@uni-freiburg.de
@biologyunifreiburg.bsky.social
: a Professor in Plant Biotechnology. 🌱🧪 The
@dompsfr.bsky.social
community is truly fantastic. Interested? Please share far and wide and join us!
uni-freiburg.de/en/job/00005...
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University of Freiburg
https://uni-freiburg.de/en/job/00005002/
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KhongSam Chia
Marion Clavel
12 days ago
Our work is out now! (
www.science.org/doi/10.1126/...
). We discover a selective autophagy pathway that protects plants from the mess caused by RNA viruses. Intrigued? Follow the spaghetti trail for a summary of our findings🧵-->
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Selective autophagy fine-tunes plant immunity to promote cell survival during viral infection
RNA viruses co-opt host endomembranes to form replication complexes, often triggering cellular stress and immune responses. Here, we show that Arabidopsis thaliana activates selective autophagy to res...
https://www.science.org/doi/10.1126/science.adu9554
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KhongSam Chia
Lucía Gómez
12 days ago
Very grateful to have received the MSCA Postdoctoral Fellowship and excited to start ✨DYNAGEN✨: Mechanisms of mChr-mediated genome dynamics in Magnaporthe oryzae 🍄🧬 at
@unihalle.bsky.social
Huge thanks to
@thorstenlangner.bsky.social
for the support and guidance 😊
cordis.europa.eu/project/id/1...
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Mechanisms of mChr-mediated genome dynamics in the cereal blast fungus Magnaporthe oryzae | DYNAGEN | Project | Fact Sheet | HORIZON | CORDIS | European Commission
Plant pathogenic fungi represent a serious threat for the productivity of agricultural systems. The blast fungus Magnaporthe oryzae is a multi-host pathogen that infects both, cultivated and wild gras...
https://cordis.europa.eu/project/id/101281623
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KhongSam Chia
Şuayb Üstün
12 days ago
What a fantastic study by
@thevirusmc.bsky.social
,
@plantophagy.bsky.social
& co. how autophagy fine-tunes immune responses during viral infection by degrading EDS1! Stay tuned - we will soon lift the mystery around why autophagy acts as a "pro-death" pathway during bacterial infection ☠️ 🤓
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Selective autophagy fine-tunes plant immunity to promote cell survival during viral infection
RNA viruses co-opt host endomembranes to form replication complexes, often triggering cellular stress and immune responses. Here, we show that Arabidopsis thaliana activates selective autophagy to res...
https://www.science.org/doi/10.1126/science.adu9554
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KhongSam Chia
Caroline Gutjahr
15 days ago
Are you excited about understanding the molecular underpinnings of arbuscular mycorrhiza? Then this PostDoc position may be for you:
jobs.mpimp-golm.mpg.de/jobposting/4...
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Postdoc (m/f/d) position on molecular mechanisms of nutrient exchange in arbuscular mycorrhiza symbiosis
https://jobs.mpimp-golm.mpg.de/jobposting/46a56c3339632b95b4b63313e101634b642e0e0e0?ref=homepage
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KhongSam Chia
Laurie Belcher
14 days ago
We’re hiring for OrthoFinder! Great role for someone who enjoys scientific software development: Python, data analysis, workflows, Git, scalability, and making tools nicer to use. Comparative genomics or open-source bioinformatics experience would be a lovely bonus.
my.corehr.com/pls/uoxrecru...
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Job Details
https://my.corehr.com/pls/uoxrecruit/erq_jobspec_version_4.display_form?p_company=10&p_internal_external=E&p_display_in_irish=N&p_process_type=&p_applicant_no=&p_form_profile_detail=&p_display_apply_ind=Y&p_refresh_search=Y&p_recruitment_id=186444
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KhongSam Chia
Team_Zuccaro
17 days ago
How do beneficial fungi remodel host cell walls without triggering immunity? We identify SiROCX as a basidiomycete-specific regulator activating CAZyme targets, including GH11/GH10/GH43/CE4 and AA9 enzymes, for xylan/cellulose remodeling during symbiosis.
www.biorxiv.org/content/10.6...
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KhongSam Chia
Martina Ried-Lasi
18 days ago
Excited to share that our work on VIH2-dependent inositol pyrophosphate signaling and arbuscular mycorrhiza is now out in Science Advances! In this study, we explore how VIH2 contributes to the regulation of AM in Lotus japonicus.
www.science.org/doi/10.1126/...
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Lotus japonicus VIH2 is an inositol pyrophosphate synthase that regulates arbuscular mycorrhiza
Inositol pyrophosphate messengers regulate arbuscular mycorrhizal symbiosis and phosphate uptake in Lotus japonicus.
https://www.science.org/doi/10.1126/sciadv.aec5607
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KhongSam Chia
bioRxiv Plant Bio
18 days ago
A Cross-kingdom Effector Modulates EDS1-dependent TIR-NLR-mediated Plant Immunity
https://www.biorxiv.org/content/10.64898/2026.05.21.726970v1
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KhongSam Chia
Gabriel Schaaf
18 days ago
Excited to see our new Science Advances paper out! A wonderful collaboration with Martina Ried-Lasi’s group at IPB Halle. Many thanks to Kiran Raj and Verena Gaugler for their outstanding work, and to everyone involved who helped make this study possible.
www.science.org/doi/10.1126/...
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KhongSam Chia
Sophien Kamoun
18 days ago
Just published a
#PreprintReview
of “The Magnaporthe oryzae Effector AvrPii Attenuates Rice Immunity by Targeting the Calcium-Associated ANK Protein AVIN8” on
@prereview.bsky.social
prereview.org/reviews/2034...
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PREreview of “The Magnaporthe oryzae Effector AvrPii Attenuates Rice Immunity by Targeting the Calcium-Associated ANK Protein AVIN8”
Authored by Sophien Kamoun and 1 other author
https://prereview.org/reviews/20348430
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KhongSam Chia
Ye Jin (Jennie) Ahn
19 days ago
A new preprint is OUT! 🚨 Thrilled to finally share our work on how decoy diversification underpins the regulation of an NLR-mediated autoimmunity. Check out the full story on @bioRxiv:
www.biorxiv.org/content/10.6...
(1/6)
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KhongSam Chia
Phil Carella
19 days ago
Check out our latest pre-print on the evolution of TIR activity/signalling:
www.biorxiv.org/content/10.6...
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KhongSam Chia
Sjon Hartman
18 days ago
Come join us to uncover epigenetic memory in trees 🎄
#plantscience
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KhongSam Chia
Elenor Kennedy
19 days ago
@khongsamchia.bsky.social
Extremely excited to share the first pre-print from my PhD project in the Carella lab, co-first authored with
@khongsamchia.bsky.social
🎉 (Thread below ⬇️)
www.biorxiv.org/content/10.6...
Huge thanks to all co-authors and the
#CarellaCapybaras
for all the support 😊
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https://www.biorxiv.org/content/10.64898/2026.05.20.726525v1
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KhongSam Chia
The Sainsbury Laboratory
18 days ago
New Preprint: Canonical NLR immune receptor architecture enforces EDS1-dependency onto divergent TIR domains (2026)
https://www.tsl.ac.uk/publications/167743
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bioRxiv: Canonical NLR immune receptor architecture enforces EDS1-dependency onto divergent TIR domains (2026)
Toll/interleukin-1 receptor (TIR) enzymes are prominent immune components in diverse organisms across the tree of life. In flowering plants, TIRs are often integrated into nucleotide binding leucine-rich repeat (NLR) receptors whose oligomerization-dependent biochemical activities create second messengers perceived by ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1)-family signaling complexes. TIR-NLRs and TIR proteins are present across the full spectrum of plant evolution, yet EDS1 signaling is a derived trait in seed plants. Here, we examined the functional dependency of diverse plant TIRs on the EDS1 pathway in the angiosperms Nicotiana benthamiana and Nicotiana tabacum. While the isolated TIR domains from non-seed plants generally required EDS1 for immune cell death activation, we also identified TIRs that functioned independent of EDS1. However, chimeric TIR-NLRs incorporating these diverse TIR domains onto the AtWRR4a receptor chassis showed a full reversion to EDS1-dependency. Extending this phenomenon further, we demonstrated that the AtWRR4a architecture enforces EDS1-dependence onto a bacterial TIR domain that is otherwise EDS1-independent. Collectively, our work demonstrates that NLR immune receptor architecture influences TIR-related immunity and provides further context to their ancient acquisition into plant immune systems.
https://doi.org/10.64898/2026.05.20.726525?utm_medium=social&utm_source=bluesky
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Preprint Alert 🚨
@philcarella.bsky.social
lab stepping into TIR-ritory!! Project started by me but finished by talented PhD student
@ebkennedy.bsky.social
(Please follow her), with contribution from Zhao He and
@jonathandgjones.bsky.social
We investigated EDS1-dependency of TIR domain. See thread👇
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19 days ago
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KhongSam Chia
Sophien Kamoun
19 days ago
Just published: The Hidden Handshake: How AlphaFold Solved a Decade-Long Mystery in Plant Immunity Over ten years in the making - generations of students and postdocs... Here's the structural basis of NLR activate-and-release, and, yes, we can engineer it.
medium.com/p/the-hidden...
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The Hidden Handshake: How AlphaFold Solved a Decade-Long Mystery in Plant Immunity
Over ten years in the making — generations of students and postdocs, countless false starts, and others were chasing this too. Here’s the…
https://medium.com/p/the-hidden-handshake-how-alphafold-solved-a-decade-long-mystery-in-plant-immunity-4739f1c0b915?source=social.tw
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KhongSam Chia
bioRxiv Plant Bio
19 days ago
Canonical NLR immune receptor architecture enforces EDS1-dependency onto divergent TIR domains
https://www.biorxiv.org/content/10.64898/2026.05.20.726525v1
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KhongSam Chia
Mauricio Contreras
19 days ago
Super cool work! Congrats
@philcarella.bsky.social
and team!
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KhongSam Chia
bioRxiv Plant Bio
19 days ago
Decoy diversification underpins the regulation of an NLR-mediated autoimmunity
https://www.biorxiv.org/content/10.64898/2026.05.19.726385v1
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KhongSam Chia
Ralph Hückelhoven
19 days ago
I am very grateful to Franz Hagn, his team and colleagues for making this possible. Atomic resolution of the inactive, active and downstream effector ICR/RIP-bound active ROP GTPase RACB. The complex may form a positively charged interface for plasma membrane interaction.
doi.org/10.1038/s420...
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Nucleotide-dependent switching and RIPb effector recognition of the barley susceptibility factor RACB - Communications Biology
High-resolution structures of the plant small GTPase RACB show how switching between inactive and active states enables RIPb effector binding, providing a physical link between the cell membrane and m...
https://doi.org/10.1038/s42003-026-10316-7
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KhongSam Chia
Team_Zuccaro
20 days ago
Proud to share our new paper on how prion-like fungal effectors target plastids and modulate host metabolism during root symbiosis. Exciting collaborative work uncovering PEPSI effectors and the interaction of one of them with DXR in plants.
www.biorxiv.org/content/10.6...
bsky.app/profile/eell...
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KhongSam Chia
Christine Faulkner
21 days ago
Emma Turley started her PhD expecting the effector ChEC108 would aid Colletotrichum establish infection, but she instead discovered that when it makes it's way to plasmodesmata it's bound by host HIPP6, triggering PD closure and impeding infection.
#PlantScience
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KhongSam Chia
Mauricio Contreras
21 days ago
Check out our latest work! AlphaFold 3 revealed a transient immune receptor complex that eluded biochemical studies for almost a decade 🤯 We describe a conserved structural logic underlying sensor–helper communication in an NLR immune receptor network 🧵👇
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Ignacio_Rubio-Somoza
22 days ago
I am thrilled to share our last work on the evolution of plant antiviral immunity
@cragenomica.bsky.social
!. Please, let us know what you think!
biorxiv.org/content/10.648
98/2026.05.18.725958v1 🧵
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https://biorxiv.org/content/10.648
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