We made it to the front of @natmicrobiol.nature.com 🤯 In this case, judging by the cover is encouraged Spatial transcriptomics maps host–gut microbiome biogeography at high resolution

Interested in teaching your kids or students about bacteria and how they interact to collectively respond to antibiotics? The @sj4k.bsky.social worked with us to adapt our recent paper into an article to help teens think about social interactions in bacterial communities:

Thank you for highlighting our work!

Spatial Gut-Microbiome MegaTranscriptomics Use in situ polyadenylation on #Visium #StereoSeq to enhance host & bacterial RNA recovery (⏫99-fold) Fresh-frozen🐭GI Non-coding RNAs enriched to gut wall Microorganisms enriched at CRC tumor boundary #NatMicrobiol 2026 www.nature.com/articles/s41...

Out Now! Spatial transcriptomics maps host–gut microbiome biogeography at high resolution #MicroSky

Our work with Lena Takayasu and @dwmckellar.bsky.social in Iwijn De Vlaminck's lab is now out in @natmicrobiol.nature.com ! 🎉 Spatial transcriptomics maps host–gut microbiome biogeography at high resolution rdcu.be/e7i7o

Spatial transcriptomics maps host–gut microbiome biogeography at high resolution www.nature.com/articles/s41... @natmicrobiol.nature.com @dwmckellar.bsky.social @ntekasi.bsky.social

I wrote about the recent autism-microbiome paper, why I think it's the most important microbiome paper this year, and what it says about the field open.substack.com/pub/blekhman...

Introducing Foli-seq in @natbiotech.nature.com today. Foli-seq can be used to measure gut-derived RNA from fecal matter (signals of immune, secretory & epithelial cells). We used this to map gut inflammation, drug response, and host-microbe interactions. 💩🧬💊🦠 www.nature.com/articles/s41...

Another banger from the @harriswang.bsky.social Lab this month! “Fecal exfoliome sequencing captures immune dynamics of the healthy and inflamed gut” www.nature.com/articles/s41...

Exciting discovery by Svensson lab and collaborators @stanfordmedicine.bsky.social, computational discovery of 2500 new bioactive peptides, including 12-mer named BRP that reduces food intake leading to weight loss w/o nausea in mice! www.nature.com/articles/s41...

Contributions from: Jeffrey Moffitt, @drmingyaoli.bsky.social, Qing Nie, Kazumasa Kanemaru, Sarah Teichmann, Daniel Dar, @ltkagohara.bsky.social, Shalev Itzkovitz, Roser Vento-Tormo, @fertiglab.bsky.social, @fabiantheis.bsky.social

Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues https://www.biorxiv.org/content/10.1101/2024.12.03.626516v1

New research from the Xavier lab at Broad reveals the gut's adaptability and immune-driven control in specific regions. A spatial map of the mouse intestines highlights its resilience to perturbations like inflammation, with implications for understanding diet, food allergies, and IBD in humans 🧬🦠

Spatial structure shapes the host-microbiome interactome. Our new method to map the host-microbiome interface at high-resolution, now on bioRxiv! Co-led with Lena Takayasu & @dwmckellar.bsky.social collab between the De Vlaminck and Brito labs doi.org/10.1101/2024... A thread⬇️