Alisia Fadini
@alisiafadini.bsky.social
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Researcher. Interested in molecular biophysics using ML + protein structure experiments.
pinned post!
Structural biology is in an era of dynamics & assemblies but turning raw experimental data into atomic models at scale remains challenging.
@minhuanli.bsky.social
and I present ROCKET🚀: an AlphaFold augmentation that integrates crystallographic and cryoEM/ET data with room for more! 1/14.
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11 months ago
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reposted by
Alisia Fadini
SBGrid Consortium
9 days ago
New Title Alert: meteor- a tool for computing crystallographic difference maps that specializes in robust identification of weak signals from minor populations such as bound ligands or time-resolved experimental changes. Learn more here:
buff.ly/bgJYF9N
#SBGrid
#SBGridSoftware
#StructuralBiology
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GitHub - rs-station/meteor: bringing you the best difference maps
bringing you the best difference maps. Contribute to rs-station/meteor development by creating an account on GitHub.
https://github.com/rs-station/meteor
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reposted by
Alisia Fadini
Minhuan Li
16 days ago
Check our new preprint smoothing rugged Cryo-EM landscapes:
shorturl.at/gYs9U
We tackle practical hurdles of Optimal Transport (OT) loss—differentiability, cost & noise sensitivity—make it a feasible inference workhorse. W/ G. Woollard, D. Herreros,
@pilarcossio.bsky.social
, K. Dao Duc 🧵👇 (1/9)
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reposted by
Alisia Fadini
cryoEM papers
about 2 months ago
The Inaugural Flatiron Institute Cryo-EM Conformational Heterogeneity Challenge
pubmed.ncbi.nlm.nih.gov/41280101/
#cryoem
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Frontier structural biology chases low occupancies: weak binders in drug discovery & fleeting intermediates in time-resolved studies. When squeezing SNR, confirmation bias looms – you can see what you hope to see in the noise! Enter METEOR ☄️, our denoising+phasing framework! 1/8
about 2 months ago
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reposted by
Alisia Fadini
Cornelius Gati
2 months ago
Excited to share our latest
@nature.com
: How does naloxone (Narcan) stop an opioid overdose? We determined the first GDP-bound μ-opioid receptor–G protein structures and found naloxone traps a novel "latent” state, preventing GDP release and G protein activation.💊🧪 🧵👇
www.nature.com/articles/s41...
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reposted by
Alisia Fadini
SBGrid Consortium
2 months ago
If you missed the live presentation with
@alisiafadini.bsky.social
and
@minhuanli.bsky.social
introducing ROCKET, you can watch the video on SBGrid's YouTube channel. More here:
buff.ly/nsA12eg
#SBGrid
#Webinars
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ROCKET
SBGrid webinars are hosted with partial support from the NIH R25 Continuing Education for Structural Biology Mentors #GM151273, in collaboration with Co-PI Jamaine Davis of Belmont University.…
https://youtu.be/_29CpGPqIQA
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reposted by
Alisia Fadini
Mohammed AlQuraishi
3 months ago
OpenFold3-preview (OF3p) is out: a sneak peek of our AF3-based structure prediction model. Our aim for OF3 is full AF3-parity for every modality. We now believe we have a clear path towards this goal and are releasing OF3p to enable building in the OF3 ecosystem. More👇
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ROCKET's webinar on cryo-EM+crystal data-guided protein structure prediction is now online 🚀:
www.youtube.com/watch?v=_29C...
Thank you to the many of you who attended and stayed overtime for more Q&A, and especially to
@sbgrid.bsky.social
for hosting us last week!
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ROCKET
YouTube video by SBGrid Consortium
https://www.youtube.com/watch?v=_29CpGPqIQA
3 months ago
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We'll cover our latest work on low resolution applications, a run-through of our codebase, and tutorials of how to run ROCKET on your own data. Join if you're interested!! 🚀
add a skeleton here at some point
5 months ago
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Structural biology is in an era of dynamics & assemblies but turning raw experimental data into atomic models at scale remains challenging.
@minhuanli.bsky.social
and I present ROCKET🚀: an AlphaFold augmentation that integrates crystallographic and cryoEM/ET data with room for more! 1/14.
loading . . .
11 months ago
6
137
64
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