Shinichi Nakagawa
@itchyshin.bsky.social
📤 1200
📥 467
📝 55
Behavioural ecologist, meta-analyst & manga-lover
reposted by
Shinichi Nakagawa
Szymek Drobniak
29 days ago
Continuing our series on difficult comparative models - and how to address them properly - we’re happy to showcase another study, this time in
@jevbio.bsky.social
academic.oup.com/jeb/advance-...
We will guide you through a series of increasingly complex models, from binary, through ordered to
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Promoting the use of phylogenetic multinomial generalised mixed-effects model to understand the evolution of discrete traits
Abstract. Phylogenetic comparative methods (PCMs) are fundamental tools for understanding trait evolution across species. While linear models are widely us
https://academic.oup.com/jeb/advance-article/doi/10.1093/jeb/voaf116/8276732
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Shinichi Nakagawa
Ned Dochtermann
about 1 month ago
We have an updated version of this preprint, available at:
ecoevorxiv.org/repository/v...
Fingers crossed the formal, final version will be out soon. We think this highlights a major issue in how we study behavior (& more). Thank you
@sekharma.bsky.social
&
@itchyshin.bsky.social
!
#evolution
add a skeleton here at some point
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reposted by
Shinichi Nakagawa
Szymek Drobniak
about 1 month ago
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reposted by
Shinichi Nakagawa
Szymek Drobniak
about 1 month ago
Our recent paper looks at location-scale interfaces in comparative data. But predicting variance in variance extends much further - if you still have not have a look here
onlinelibrary.wiley.com/doi/full/10....
(another recent paper in
@globalchangebio.bsky.social
). We show how extending the idea
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Location‐Scale Meta‐Analysis and Meta‐Regression as a Tool to Capture Large‐Scale Changes in Biological and Methodological Heterogeneity: A Spotlight on Heteroscedasticity
Meta-analyses are widely used to understand how species and ecosystems respond to global change, but most assume that variability among studies is constant. This assumption can hide important biologi....
https://onlinelibrary.wiley.com/doi/full/10.1111/gcb.70204
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reposted by
Shinichi Nakagawa
John Innes Centre
about 1 month ago
VACANCY - Independent research fellowships leading to tenured positions We’re inviting applications from outstanding researchers who either hold, or wish to apply for, Independent Research Fellowships. APPLICATION DEADLINE: 10 November 2025 Click here to apply:
jic.link/Fellows
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Shinichi Nakagawa
EvolDir
about 1 month ago
UMass Boston seeks a tenure-track Assistant Professor in microbial ecology, starting September 1, 2026. Apply by December 1, 2025. Details:
http://www.umb.edu/academics/csm/biology
#job
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Biology - UMass Boston
Biology - UMass Boston
http://www.umb.edu/academics/csm/biology
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reposted by
Shinichi Nakagawa
Szymek Drobniak
about 1 month ago
By extending the comparative model we can assay the evolutionary signal in evolvability itself and test a number of biologically interesting trait configurations (codivergence, contra-divergence, ceiling effects, phenotypic integrations and more!)
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Shinichi Nakagawa
Szymek Drobniak
about 1 month ago
The models are notably more complex but fittable with modern Bayesian GLMM routines. Think of them as looking at mean and scale (usually variance) evolution along the tree, here in an example of two concurrent Brownian Motion dynamics driving diversification of both variance and means.
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reposted by
Shinichi Nakagawa
Szymek Drobniak
about 1 month ago
Our newest paper is out in Methods in Ecol Evol
@methodsinecoevol.bsky.social
:) amazing team effort - we show that the traditional way of analyzing comparative data lacks finesse.
besjournals.onlinelibrary.wiley.com/action/oidcS...
w/
@itchyshin.bsky.social
Yefeng Yang, Losia Lagisz & Ayumi Mizuno
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reposted by
Shinichi Nakagawa
Ben Longdon
about 2 months ago
2 job adverts on a NERC project w myself +
@darrenobbard.bsky.social
on “What determines the virome: ecology and the environment, evolution, or species history?” early 2026 in
@uniexecec.bsky.social
- Postdoc:
jobs.exeter.ac.uk/hrpr_webrecr...
- RA:
jobs.exeter.ac.uk/hrpr_webrecr...
Pls share!
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Shinichi Nakagawa
Jonathan Thong
about 2 months ago
Fellow econ folks! We are hiring! Come work with me and my delightful colleagues at The University of Melbourne! Applications close November 23, 2025 Link:
unimelb.wd105.myworkdayjobs.com/en-US/UoM_Ex...
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Shinichi Nakagawa
Denis REALE 🇨🇦
about 2 months ago
Have you always thought about running simulations to make sure your models work the way you want them to? The new squidSim can help! I'm very impressed with how
@joelpick.bsky.social
led this project and with the amazing final result!
add a skeleton here at some point
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Shinichi Nakagawa
James Steele
about 2 months ago
Clearly I'm grumpy about the state of research in the field atm, particularly how power analyses are performative and hypothesis testing is butchered... so resharing this chat I had with
@runbabyo.bsky.social
et al. where we talk about these topics
www.youtube.com/live/b0rXmtx...
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Casual Chat with Dr. James Steele
YouTube video by AASPT
https://www.youtube.com/live/b0rXmtxDpz4?si=zHoia80Qdc4MzKu-
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reposted by
Shinichi Nakagawa
Dave Armitage
about 2 months ago
Please consider applying to our open faculty position call that includes Ecology!
apply.interfolio.com/172075
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Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
https://apply.interfolio.com/172075
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reposted by
Shinichi Nakagawa
Joel Pick
about 2 months ago
Interested in simulating the kind of data that you might commonly find in evolutionary and ecological studies? Then we have the R package for you - squidSim!! Check our new preprint:
ecoevorxiv.org/repository/v...
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squidSim: a flexible R package for structured and reproducible simulations in Ecology and Evolutionary Biology
https://ecoevorxiv.org/repository/view/10186/
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reposted by
Shinichi Nakagawa
Jennifer Byrne
about 2 months ago
International
#ResearchIntegrity
conference 16-18 November 2025 Come to hear
@elisabethbik.bsky.social
Ivan Oransky
@jamesheathers.bsky.social
@retractionwatch.com
Lisa Bero
@liammannix.bsky.social
@jdwilko.bsky.social
@jacksonwryan.com
+many others, stay for Sydney in late Spring
@sydney.edu.au
🧪
add a skeleton here at some point
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reposted by
Shinichi Nakagawa
Mel Goodale
about 2 months ago
The Department of Neuroscience at the University of Lethbridge has a tenure-track position for a neuroscientist studying brain function across the life span in nonhuman animals. Join a terrific community of researchers in a beautiful part of the country.🧠🧪 Re-post
uleth.peopleadmin.ca/postings/8586
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reposted by
Shinichi Nakagawa
Daniel Bolnick
2 months ago
Members of the American Society of Naturalists
@asn-amnat.bsky.social
can get free registration to the 2025 SORTEE conference Oct 15-16
sortee.org/upcoming/
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Upcoming events
Upcoming conference by Society for Open, Reliable, and Transparent Ecology and Evolutionary biology (SORTEE)
https://sortee.org/upcoming/
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reposted by
Shinichi Nakagawa
Ned Dochtermann
2 months ago
Sekhar won the best poster award (!) and you can learn more about this work, done in collaboration with
@itchyshin.bsky.social
in preprint form at:
ecoevorxiv.org/repository/v...
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Ungeneralizable generalizations? A meta-meta-analysis of the influence of taxonomic bias on the study of behavior.
https://ecoevorxiv.org/repository/view/9555/
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reposted by
Shinichi Nakagawa
Dom Roche
2 months ago
~10 years after the experiments, the paper is finally ready 😅😅 Take home: nothing beats patient collaborators 😆 Thanks
@josefin-sundin.bsky.social
@BenSpeers-Roesch
@itchyshin.bsky.social
@TimClark @SandraBinning!!
#OceanAcidification
#AnimalBehaviour
#OpenScience
ecoevorxiv.org/repository/v...
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No effect of ocean acidification on individual-level variation in behaviour and susceptibility to predation in a Great Barrier Reef damselfish
https://ecoevorxiv.org/repository/view/10127/
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reposted by
Shinichi Nakagawa
Dan McNeish
2 months ago
Tenure-Track Quant Psyc job opening at Northern Arizona University in Flagstaff. Areas of interest are pretty broad (SEM, multilevel, or psychometrics), the deadline to apply is coming up soon (Sept 15) if you're interested!
careers.nau.edu/jobs/assista...
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Assistant Professor, Psychological Sciences - Flagstaff, Arizona, United States
About the Department/College The Department of Psychological Sciences is located on the Flagstaff Mountain Campus of Northern Arizona University (NAU), situated at the base of San Francisco Peaks. NAU...
https://careers.nau.edu/jobs/assistant-professor-psychological-sciences-flagstaff-arizona-united-states
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reposted by
Shinichi Nakagawa
Alex Holcombe
2 months ago
the Association for Interdisciplinary Metaresearch and Open Science always welcomes new people doing or curious about metaresearch!
add a skeleton here at some point
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reposted by
Shinichi Nakagawa
Eamonn Wooster
3 months ago
Very happy to share that I've been awarded the 2025
@ecolsocaus.bsky.social
"Next Generation Ecologist" award. I'll be giving a plenary at the ESA2025 in Adelaide. See you there!!
www.ecolsoc.org.au/news/2025-ne...
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2025 Next Generation Ecologist Award Winner Announced - Ecological Society of Australia
We are very pleased to announce Dr Eamonn Wooster as the 2025 Next Generation Ecologist Award winner! Dr Eamonn Wooster holds an independent fellowship at Charles Sturt University. His work spans beha...
https://www.ecolsoc.org.au/news/2025-next-generation-ecologist-award-winner-announced/
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reposted by
Shinichi Nakagawa
Jason Rasgon
3 months ago
The Center for Infectious Disease Dynamics (CIDD) at Penn State is hiring for a senior-level position in Infectious Disease Modeling. Come join our dynamic group of disease researchers! Feel free to message me for details
psu.wd1.myworkdayjobs.com/en-US/PSU_Ac...
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Full or Associate Professor in Infectious Disease Modeling
APPLICATION INSTRUCTIONS: CURRENT PENN STATE EMPLOYEE (faculty, staff, technical service, or student), please login to Workday to complete the internal application process. Please do not apply here, a...
https://psu.wd1.myworkdayjobs.com/en-US/PSU_Academic/job/Full-or-Associate-Professor-in-Infectious-Disease-Modeling_REQ_0000070169-1
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reposted by
Shinichi Nakagawa
Dr. K. Lotterhos
3 months ago
Today 14 scientific societies in
#ecology
#evolution
and
#marineScience
are publishing the results of a survey that finds negative impacts of federal policies on food security, flood mitigation, infectious disease preparedness, and wildlife conservation: 🧪👩🔬
www.firsthandaccounts.org/impacts/2025...
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Shinichi Nakagawa
Cassie Speakman
3 months ago
The latest paper from the DISCAR synthesis group is out at Ecology Letters! We discuss the key approaches to predicting human impacts on wildlife populations, highlighting avenues for incorporating indirect effects, such as energetic modelling.
doi.org/10.1111/ele....
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reposted by
Shinichi Nakagawa
EcoEvoRxiv
3 months ago
The SORTEE Guidelines for Data and Code Quality Control in Ecology and Evolutionary Biology
doi.org/10.32942/X24...
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reposted by
Shinichi Nakagawa
Dustin Marshall
about 1 year ago
I wrote (ranted) on experimental design as I was frustrated as an editor at how little guidance students were getting. I underestimated the interest in the issue: it has been downloaded 10,000+ times! Clearly it’s something we need to be talking about more.
onlinelibrary.wiley.com/doi/full/10....
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Principles of experimental design for ecology and evolution
Here I argue that we do not discuss experimental design, often until it is too late. This editorial seeks to begin a conversation about how and where to replicate appropriately.
https://onlinelibrary.wiley.com/doi/full/10.1111/ele.14400
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reposted by
Shinichi Nakagawa
#MCMC
takes too long for a human being? (drawn by ChatGPT)
3 months ago
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reposted by
Shinichi Nakagawa
Bert van der Veen
3 months ago
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#MCMC
takes too long for a human being? (drawn by ChatGPT)
3 months ago
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reposted by
Shinichi Nakagawa
Joel Pick
3 months ago
🚨Introducing the
@sortee.bsky.social
Guidelines for Data and Code Quality Control in Ecology and Evolutionary Biology🚨
doi.org/10.32942/X24...
Increasingly E&E journals are recruiting data editors. We provide standardised guidelines for journals with data editors and those wanting to recruit them 🧵
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The SORTEE Guidelines for Data and Code Quality Control in Ecology and Evolutionary Biology
https://doi.org/10.32942/X24P8S
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reposted by
Shinichi Nakagawa
Aki Vehtari
over 1 year ago
All three books I've co-authored are freely available online for non-commercial use: -
#Bayesian
Data Analysis, 3rd ed (aka BDA3) at
stat.columbia.edu/~gelman/book/
-
#Regression
and Other Stories at
avehtari.github.io/ROS-Examples/
- Active Statistics at
avehtari.github.io/ActiveStatis...
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reposted by
Shinichi Nakagawa
David Lowry
3 months ago
Michigan State University, Ecology, Evolution, and Behavior Presidential Postdoctoral Fellowship.
eeb.msu.edu/initiatives/...
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Postdoctoral Fellowship - Ecology, Evolution, and Behavior
https://eeb.msu.edu/initiatives/postdoctoral-fellowship/index.aspx
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reposted by
Shinichi Nakagawa
Richard D. Morey
3 months ago
Paper drop, for anyone interested in
#metascience
,
#statistics
, or
#metaanalysis
!
@clintin.bsky.social
and I show in a new paper in JASA that the P-curve, a popular forensic meta-analysis method, has deeply undesirable statistical properties.
www.tandfonline.com/doi/full/10....
1/?
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reposted by
Shinichi Nakagawa
Shawan Chowdhury
3 months ago
iNaturalist is shaping the future of biodiversity research. See our recent paper, published in Bioscience.
doi.org/10.1093/bios...
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reposted by
Shinichi Nakagawa
Jarrett Byrnes
3 months ago
NEW JOB POSTING -
#DataScientist
/ Senior Data Scientist at
@stonelivinglab.bsky.social
- come help us make a wealth of climate resilience and environmental data accessible to everyone from scientists to policy makers to the public! See
employmentopportunities.umb.edu/boston/en-us...
for details
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Page Up - UMass Boston
https://employmentopportunities.umb.edu/boston/en-us/job/528041/data-scientist-senior-data-scientist
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reposted by
Shinichi Nakagawa
Australasian Evolution Society
3 months ago
Calling all evolutionary biologists! **AES 2025 Conference** 📍 UQ Brisbane | 🗓 1–3 Oct **Talks close 1 Sept** Don’t miss out — submit & join us for three days of cutting-edge science + community!
aes.corsizio.com/event/685405...
#AES2025
#Evolution
#ECR
#SciComm
#AusSci
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reposted by
Shinichi Nakagawa
Australasian Evolution Society
3 months ago
AES 2025 ECR Awards – Apply Now! Submit your best paper (preprints welcome!) for a chance to give a 30-min plenary at AES 2025 in Brisbane. Two categories: PhD and Postdoc Winners get $500 travel support + free rego 🔗
ausevo.com/2025_researc...
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reposted by
Shinichi Nakagawa
Frank Melzner
3 months ago
Doctoral position on genomic basis of Fucus (brown algal) local adaptation - join our exciting
#Fubluc
team! Fully funded for 3.5 years & we also consider candidates with strong molecular or bioinformatic skillls but no marine / algal experience, see
www.geomar.de/en/karriere/...
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reposted by
Shinichi Nakagawa
Ed Ivimey-Cook
3 months ago
Here's said mascot along with an excellent checklist by
@shreyadimri.bsky.social
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Shinichi Nakagawa
Ed Ivimey-Cook
3 months ago
🎉New preprint! "TADA! Simple guidelines to improve code sharing"
tinyurl.com/8rmnwjrk
We present simple guidelines to help researchers of all coding levels improve the transparency and reproducibility of their analytical code, TADA! Transferable, Accessible, Documented, Annotated.
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TADA! Simple guidelines to improve code sharing
https://ecoevorxiv.org/repository/view/9806/
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Shinichi Nakagawa
SORTEE
3 months ago
📷 The 2025 SORTEE conference program is now online! Visit
sortee.org/upcoming/
to register and explore the exciting lineup of various sessions.
#SORTEE2025
If you know a great open science project, now is the time to nominate it for a SORTEE Award
www.sortee.org/awards/
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reposted by
Shinichi Nakagawa
AIMOS
3 months ago
The call for proposals is now up for our long awaited
#AIMOS2025
conference in Sydney this November:
aimos-inc.github.io/aimos.confer...
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reposted by
Shinichi Nakagawa
Around 3 years ago, we started writing papers during our weekly lab meetings. This is the first one from our new lab at
@ualberta.bsky.social
Location-Scale Models for Ecologists! preprint:
ecoevorxiv.org/repository/v..
. tutorial: ayumi-495.github.io/Eco_location... Enjoy!
#glmmTMB
#brms
4 months ago
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reposted by
Shinichi Nakagawa
AusRN
4 months ago
Register now for the next joint
@aimosinc.bsky.social
@ausrepro.bsky.social
webinar "Preventing statistical errors before publication" with Dr Michèle Nuijten and Dr Tom Hardwicke on Wed 27 Aug (4:00pm AEST).
@michelenuijten.bsky.social
@tomhardwicke.bsky.social
qut.zoom.us/meeting/regi...
2/3
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reposted by
Shinichi Nakagawa
Jarrett Byrnes
4 months ago
🔥🔥🔥 New paper: Location scale models in ecology: heteroscedasticity in continuous, count, and proportion data from
@itchyshin.bsky.social
et al. with a code tutorial for
#rstats
!
ecoevorxiv.org/repository/v...
for paper and
ayumi-495.github.io/Eco_location...
for code! 🌍🧪
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Location–scale models in ecology: heteroscedasticity in continuous, count and proportion data
https://ecoevorxiv.org/repository/view/9705/
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Around 3 years ago, we started writing papers during our weekly lab meetings. This is the first one from our new lab at
@ualberta.bsky.social
Location-Scale Models for Ecologists! preprint:
ecoevorxiv.org/repository/v..
. tutorial: ayumi-495.github.io/Eco_location... Enjoy!
#glmmTMB
#brms
4 months ago
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reposted by
Shinichi Nakagawa
Jun Otsuka
4 months ago
All titles of Cambridge Elements in the Philosophy of Biology, including mine The Role of Mathematics in Evolutionary Theory, are downloadable for free till the 25th.
www.cambridge.org/core/element...
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The Role of Mathematics in Evolutionary Theory
Cambridge Core - Philosophy of Science - The Role of Mathematics in Evolutionary Theory
https://www.cambridge.org/core/elements/role-of-mathematics-in-evolutionary-theory/873B4FDDA1F95DC93D65291D318A0D69
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