🚨 Wow, that really sounds like an amazing opportunity… If I were a bit younger, I would start preparing my application already… 😮 www.scilifelab.se/news/ready-t...

Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030 abo.rekrytointi.com/paikat/index...

Check out our amazing #bobiac2025 cohort! Was a joy to teach this group! Thanks @bioimagingna.bsky.social for generously supporting this 6 week bioimage analysis w/Python course!

Day 1 of #bobiac2025 🐍 The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!

First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @fedegasparoli.bsky.social - "This will be a long week, but it will change your life". iac.hms.harvard.edu/bobiac/2025/

A major KI initiative to recruit new assistant professors with outstanding proposals in all areas of medicine, biomedicine and public health. We offer an amazing research environment, great colleagues and generous startup packages. Check it out and get working on your applications! (repost please!)

Are you looking for a postdoc? I will be looking for 2-4 people after the summer to join the lab !! Do not hesitate to reach out and disseminate !!

Come and work with us! Super exciting and relevant projects! Become an #AI pro and do something positive for the 🌍! 👩‍🎓 🧑‍🎓 If you know someone who might be interested… please repost and/or forward this! 🙏

‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻 Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required! Fee waivers available! 🗓️ Apply by June 1st! 🌐 iac.hms.harvard.edu/bobiac/2025/

Deadlines extended - you can still register for the GloBIAS conference! We have extended most deadlines. Please check our webpage: tinyurl.com/mr3kx5a5! Looking forward to welcoming you to Kobe, for training, developing and discussing a broad range of BIA topics!

Thanks to generous support from @bioimagingna.bsky.social we now have even more fee-waivers for our workshop. No funds, but want to learn? Apply below.

BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...

‼BREAKING‼ We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python! Apply by June 1st! iac.hms.harvard.edu/bobiac/2025

Please join in-person if you are nearby, or by Zoom if not.

In the past 2 days, we had the great pleasure to host an in-person workshop at @istaresearch.bsky.social with the collaboration of @globias.bsky.social, @carpentries.carpentries.org and @istaustria-iof.bsky.social. We wanted to create a go-to course for image analysis in Python. Info in the thread!

Your yearly reminder to acknowledge the core facilities you use and their staff scientists in your papers. These scientists are a crucial part of the scientific ecosystem and to continue to exist they need tangible credit for their work. Plus their associated expertise adds credibility to your work.

We wrote an opinion with simple, practical advice for building data exploration workflows in quantitative cell biology with @guijacquemet.bsky.social and @hanna09.bsky.social . I hope you find it useful!

Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)

Another in-person event from #GloBIAS Together with #Data Carpentry. Thanks to the GloBIAS volunteers at ISTA for organising and hosting us! #BioImageAnalysis #Python

Preprint (update) alert! F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009) 0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France. 👇 a short thread

Now that looks like a great new course to check out! More python 🐍 heavy than other courses I know… which is great to have! 👍 Check it out, sign up, learn!!! 🤩

The registration close Tuesday next week! research.pasteur.fr/en/course/ne...

This summer, we are running a one-week intensive workshop on Python-based BioImage Analysis. Are there better ways to spend 6 days in mid-July in Boston?Probably. Would you learn as much as you will here? Probably not. Apply here: iac.hms.harvard.edu/bobiac/2025

Bring your samples into focus! A new version of the #Cellpose cell boundary mapping tool, developed at @hhmijanelia.bsky.social by @computingnature.bsky.social and @marius10p.bsky.social, now works on less-than-perfect microscopy images that are noisy, blurry, or undersampled.

Thrilled to be teaching this course again this semester! Join us in Boston for an exciting day of learning image analysis, cell detection & classification, spatial analysis and so much more using QuPath. Registration: tinyurl.com/iac-qupath-2...

I released the LUT finder: A plugin to see all your ImageJ / Fiji LUTs in a table with previews, auto generated descriptions and filtering! You can try it with the KTZ_LUTs update site or from github.com/kwolbachia/L.... I'm looking for your feedbacks! #FluorescenceFriday #MicroscopyMonday

Join us for our first workshops of 2025! 📌 Workshop 1: Image analysis with ImageJ/Fiji 📆 Date: Jan 22 & 24, 2025 🔗 tinyurl.com/iac-fiji-202... 📌 Workshop 2: ImageJ/Fiji's macro language 📆 Date: Jan 28, 2025 🔗 tinyurl.com/iac-fiji-mac... 📍 Location: HMS campus, Boston Open to all—don't miss out!

Come work with us in the Cimini Lab! The image analysis associate position we're hiring will be working directly with me!

Best (and most demanding) combined microscopy and image analysis course I know of. Apply!

Interested in microscopy and/or image analysis? Check out my newest starter pack of super folks.(which also links to the previous, 150-awesome-full one! Both also link to other imaging-y starter packs as I find them) go.bsky.app/MU8c2A2

Great opportunity to work at the cutting edge of AI applied to biological imaging (and beyond) ⬇️⬇️⬇️

Feel seen

We've created a mailing list for Microtutor, our interactive virtual light microscopy courses! Join to learn about new courses: lp.constantcontactpages.com/sl/5BYgJu6/m... Microtutor: microtutor.globalbioimaging.org

Save the date... our 3rd edition, 2nd hybrid, of this course tailored to bio image analysts. Further info to come soon.

I made a BioImage Analysts Starter pack. Reachout if you're missing on it 🔬💻🌐 go.bsky.app/2hPEBDu

I was lucky enough to attend the Workshop where the linked paper was born. You really couldn’t hope to meet a more friendly, clever and approachable bunch, who are all so keen to help other researchers. Check out their Perspective article: journals.biologists.com/jcs/article/... #bioimageanalysis

I don't think I saw this on social media at all: a bunch of very clever people (including our team) has put together a federated bioimage repository based on OME-Zarr with 500TB of data in 4 months! ome.github.io/ome2024-ngff...

Like TweetDeck, but better. Because it is here and because it is free.

Made a starter pack for microscopy and image analysis - please (self-)nominate additions! go.bsky.app/Nwa91pC

Need a 5-15 minute break from doomscrolling? (You know you do!) Take 5 minutes and tell us how to make #bioimageanalysis #imageanalysis better!

If you'd like to learn more about the tools available in the Fluorescent Protein Database, FPbase, here's an excellent lecture from creator Talley Lambert! youtu.be/nETkUNQ48Sg

An excellent primer on co-localization analysis from Federico Gasparoli! youtu.be/Mv4M1HaYdBc @fedegasparoli.bsky.social

Important commentary on computational analysis in bioimaging Highlights how biology is now a data science (omics, imaging, structure, epidemiology, clinical...) This has major implications for education, training, research culture & infrastructure journals.biologists.com/jcs/article/...

New from a huge cast of amazing #bioimage analysts in the Journal of Cell Science - "The crucial role of bioimage analysts in scientific research and publication" journals.biologists.com/jcs/article/... . Hop into 🧵to learn more! (1/x) #bioimaging #microscopy #bioimageanalyst

@carlbergstrom.com The dark side of corvids. They held a multigenerational grudge against my previous dog and would stalk him all over Urbana-Champaign. I thought it was my fanciful imagination until I read this article. www.nytimes.com/2024/10/28/s...

A classic in dynamical systems: the Lorenz attractor, computed and visualized using #Fiji in #BigDataViewer

FAIR reuse of FAIR slides at #i2k2024 @ctrue.bsky.social @joshmoore.bsky.social

If you didn't yet have enough good reasons to share your bioimage data, Matthew, Josh (@joshmoore.bsky.social), Erin, Assaf and I are here with squirrel drawings to convince you that you should do it: journals.biologists.com/jcs/article/...

Blown away by the initial talks by @ctrue.bsky.social and Hari Shroff at #i2k2024 . Amazing inspiration of how we can build the best, most inclusive tools, and what discovery we empower when we do!