Several members of the #FDFE team participate in the #SolRub2025 meeting in Torino, Italy this week. 3 talks and 3 posters presented. Stimulating meeting gathering specialists of the Solanaceae and Rubiaceae communities.

#Formations #bioinfo & #biostat 2025 ! (certaines déjà complètes) R, Seurat, ggplot2, mixOmics, machine learning, ASTERICS, RNAseq... Modules IA pour la #génomique avec Python 🧬 ☑️ Attestation fournie ☑️ Déj’ & café inclus ☑️ À partir de 150€/jour (académiques) 🔗 Pré-inscriptions : bit.ly/3ZvwHKd

Quelques 📸 des Journées Jeunes Chercheur·e·s du département BAP, à Bordeaux 14-16 mai Organisées par un comité local, elles ont permis de mettre en valeur les travaux scientifiques des doctorant·e·s et postdoc via des présentations orales, posters, échanges scientifiques et moments de convivialité 👏

🤓🌱 Two of our excellent PhDs, Loé and Emilia, took part in the “Tête Chercheuse” day at a secondary school in Dordogne This event, organized by @univbordeaux.bsky.social and @capsciences.bsky.social , aims to promote the role of women in science and inspire the next generation of scientists. 👏👩‍🎓👩‍🔬

📸 Here is the new group pic from the #FDFE team! Taken during our team building day 2025 @capsciences.bsky.social A great day of warmth, sharing and good vibes 🍃🤝 It strengthened team spirit and helped colleagues, new and old, get to know each other better✨ #FDFE #INRAE #Bordeaux

Preprint on hifiasm Nanopore-only assembly. Led by Haoyu Cheng: www.biorxiv.org/content/10.1...

This week we’ve had the pleasure to host @pgpmartin.fr @inrae-bfp.bsky.social to launch our pilot CUT&RUN experiment on Medicago nodules! 🌱 Thanks for sharing your expertise with us, Pascal 👨‍🔬 and thanks @tulip-gs-labex.bsky.social for funding 🙏

🚨New paper published in @nature.com! Using pan-genetics across the Solanum genus🍅🥔🍆we reveal why gene duplications🧬are major contingencies in crop engineering. My postdoc work in the Lippman lab @CSHL, collab. with @katiejenike.bsky.social @mikeschatz.bsky.social chatz.bsky.social and many others!

📢 #ScienceJob TECHNICIEN-NE BIOLOGISTE EN PHENOTYPAGE 🍓🍅 Vous êtes intéressé-e par: ➡ les recherches qui ont du sens 🌍? ➡ la biologie des plantes ? ➡ le travail en serre (notations) et au labo (architecture, cytologie)? Candidatez avant le 20/03/25 ❗ Plus d'infos 👇 jobs.inrae.fr/concours/con...

Happy new year! Let's start 2025 with an #ImageOfTheMonth from N. Bollier @inrae-bfp.bsky.social. Scanning confocal 3D reconstruction of a tomato shoot apical meristem. The fixed meristem was cleared using clearsee and the cell walls are stained by calcofluor white.

We are pleased to announce JBrowse v3.0.0! This is the latest semver bump to our JBrowse 2 product line For this release, we created new features for phased and polyploid VCFs. The new phased mode in particular can reveal interesting patterns of inheritance in trio VCFs jbrowse.org/jb2/blog/202...

🚀 Ready to dive into omics data integration?
Our mixOmics online course kicks off in ONE month! Perfect for beginners and those looking to deepen their skills. Bring your own data and learn hands-on on your own data! 👉 Register now: mixomics.org/2024/12/onli... 📅 Spots are limited -- don’t miss out!

Our global study on the state of trust in scientists is now out in Nature Human Behaviour! 🥳 With a team of 241 researchers, we surveyed 71,922 people in 68 countries, providing the largest dataset on trust in scientists post-pandemic 👇🧵https://www.nature.com/articles/s41562-024-02090-5

#ScienceNow We didn't have adapters to centrifuge the tubes containing our nuclei 🤔 But our colleague Mickaël Maucourt from the #BFP_META team designed these for us and printed them! 🤓 They work perfectly! 🎉 Thank you! 🙏 We will soon share the link to the design.

The Institut Pasteur has decided to leave X (formerly Twitter) to join BlueSky! 🦋 The Institut Pasteur made this decision due to several serious issues observed on the X platform since its acquisition. Join us here to continue advocating for science. www.pasteur.fr/en/home/pres...

📢 Registrations for our next online course are open 📢 mixomics.org/2024/12/onli... Great course for mixOmics beginners, those who want to depend their understanding of our omics data integration methods. BYO data to analyse. Register before 11th Feb! #omics #rstats #dataintegration

Very happy to see this work out on bioRxiv: We applied a synthetic GRF-GIF chimera for tomato plant transformation and found that it reliably enhances regeneration, increases the number of transgenics and shortens the time for genome editing experiments in tomato. www.biorxiv.org/content/10.1...

An upd report on our workshops for Ukraine series on #RStats, #Python & more. So far, we have raised >86k euro & the workshops have been attended by > 3900 ppl! 👇you can find more info on how you can help & a detailed report. All info on workshops: bit.ly/3wBeY4S 1/n

Many new people leaving the other place and coming here. So here is a starter pack of colleagues working at @INRAE_france on Agriculture, Environment, Food, Forests issues, from various disciplines. Please let me know if you want to be added. go.bsky.app/CuM8ekE

The @conesalab.bsky.social conesalab.org is seeking to join motivated Postdocs through the #JuanDeLaCierva from @ageinves.bsky.social tinyurl.com/32acz58 and #CIAPOS tinyurl.com/bmrex8cc Contact us ASPA if interested in long-read, single-cell or spatial transcriptomics and multi-omics.

L'appel à proposition pour les mini #symposiums de #JOBIM2025 est lancé !! Un mini-symposium: ➡️ réunit des scientifiques autour d'une thématique spécialisée en #bioinformatique 🗣️ ➡️ dure 3 heures ⌚ ⌛Attention, vous avez jusqu'au Vendredi 17 Janvier 2025 à 18h pour nous envoyer vos propositions!

I have written a couple of threads 🧵 on "classic" #PlantScience papers. I always tag them with #PlantScienceClassics , but will also compile them here in this thread: 👇

We are delighted to bring #ICAR2025 to Gent in Belgium! Abstract submission OPEN! icar2025.com @aabiologists.bsky.social @moritznowack.bsky.social @hildenelissen.bsky.social @bertderybel.bsky.social @mehta-lab.com @kuleuvenuniversity.bsky.social @viblifesciences.bsky.social

Look at this crazy thing www.nature.com/articles/s41...

The {ggsci} #RStats 📦 “offers a collection of ggplot2 color palettes inspired by scientific journals, data visualization libraries, science fiction movies, and TV shows.” By Nan Xiao. Use with: scale_color_palname() scale_fill_palname() nanx.me/ggsci/ #RStats #ggplot2 #ggplot

Check out our new protocol avaliable in Methods in Molecular Biology! We describe a straightforward mass-spec protocol for the analysis of histone PTMs and variants link.springer.com/protocol/10....

Gene regulation involves thousands of proteins that bind DNA, yet comprehensively mapping these is challenging. Our paper in Nature Genetics describes ChIP-DIP, a method for genome-wide mapping of hundreds of DNA-protein interactions in a single experiment. www.nature.com/articles/s41...

I created a starter pack including people working in #bioinformatics core facilities 🧬 🖥️ I am sure I missed a lot of relevant people, so if you'd like to be added or know people who should be in there, let me know! go.bsky.app/LfGCpSX

@nanoporetech.com Nice you see you all finally jumped on board over here! 🙌 🧪🖥🧬

Bonjour agent.e, 🕵️ Nous avons besoin de votre aide. Le site Web #JOBIM2025 a été mis en ligne. 🥳 ⏩ jobim2025.labri.fr Votre mission, si vous l'acceptez, est de mettre en favori ce site, ainsi que de le partager à un maximum de collègues. Alors, cap ou pas cap ? 🧢

Today I learned that combining a density plot with a jitter / dot plot is called a "raincloud" plot. And also discovered the {ggrain} package. Very nice, I remember doing it almost by hand in base R. #rstats www.njudd.com/raincloud-gg...

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Check out our new paper led by Hayden Ji, in PLoS Computational Biology, on a hundreds of new protein-coding exnos in the human genome: journals.plos.org/ploscompbiol...

The Vienna BioCenter Scientific training unit is now on #Bluesky and we will share news and vacancies from our PhD program, summer school and other interesting initiatives. @impvienna.bsky.social @maxperutzlabs.bsky.social @gmivienna.bsky.social @imbavienna.bsky.social @univie.ac.at

My first post on Blue Sky - moving over ! For all post-docs out there - fantastic opportunity @EMBL. Independent group leader position: Core funding, state-of-the-art core facilities, access to fantastic Ph.D. students, and of course amazing colleagues. Please apply www.embl.org/jobs/positio...

EpiSci - Variation of C-terminal domain governs RNA polymerase II genomic locations and alternative splicing in eukaryotic transcription @ZhangLab_UT www.nature.com/articles/s41...

"Epigenetic control and inheritance of rDNA arrays" New preprint from the T2T acrocentrics team! We find a tight link between methylation and transcription of the rDNAs, including the occasional silencing of entire arrays www.biorxiv.org/content/10.1...

Hi everyone!! We are excited to be here as a community of scientists working on #plantscience ☘️🌱 and their associated microbes 🍄 ! Want to follow our institute members? Here is our starter pack (to be updated): go.bsky.app/9p1bZz2

Nice to see all you chromatin & epigenetics aficionados here! As we build our network back up please repost details for our upcoming webinar this Friday! We are delighted to welcome Emma Farley for her webinar 'Dependency Grammar of Developmental Enhancers' on November 22nd. Registration below 👇

Please register for the course on Transposable elements in #genomics and #datascience. We will be sharing the magic of #nanopore long reads for #transposon expression #tesky

We strongly suggest that academic publishers and other platforms that host research rapidly implement a Share to Bluesky button for their articles. Here's how: docs.bsky.app/docs/advance... #AcademicSky #HigherEd #Altmetrics

OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes. Nucleic Acid Res doi.org/10.1093/nar/...

📹 "Live exploration of latest #RStats news on Bluesky" @libdrstats.bsky.social @bsky.app intro: starter packs (including @jeremy-data.bsky.social & @sherlockpholmes.bsky.social) & feeds (algorithms) + @hadleywickham.bsky.social's curated feed, @bioconductor.bsky.social news 👀 youtu.be/hclxkkp-V_I

Dusting off this account since it seems like BlueSky is suddenly the place to be! Here's a couple of resources for anyone interested in gene regulation, chromatin, or genomics: First, a long list of relevant accounts: bsky.app/profile/shau... (will make some starter packs at some point)

Yeah where is @ass_dean? We need them here, not THERE!

Download our database of 313 different postdoctoral fellowships. For each entry, we provide link to funder, description, amount, deadline, and eligibility criteria (e.g. citizenship). Download our database here: research.jhu.edu/rdt/funding-...

Hello, since the requests to be added to the #PlantScience Research #StarterPack keep coming, I have created a 2nd Pack. So, here are Part 1: go.bsky.app/8Zfmwf7 Part 2: go.bsky.app/3NcqRCE

one of my labmates is a genius, behold her tiny arabidopsis farm made from a 96-well plate and pcr strip lids 🤩😆

Welcome to the feed on all things SingleCell genomics! Anyone can post to this feed: tag with #SingleCell (also picks up posts with #transcriptomics | #multiomics) Please use Alt text in images and CamelCase tags. ✌️🚀