Haoran Cai
@haorancai.bsky.social
📤 336
📥 254
📝 12
Evolutionary and Quantitative Genetics | Regulatory evolution | Development Post-doc @UCLA EEB
pinned post!
🚨 New Paper 🚨 Thrilled to share new work with
@evodaveo.bsky.social
eo.bsky.social
! We dive into the evolution of gene duplicates and demonstrate how expression variability might contribute to retention following duplication. Read the full article here:
academic.oup.com/gbe/article/...
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Dynamics of Expression Variability Contribute to Retention of Small-Scale vs. Whole-Genome Duplicates
Abstract. Genome analyses reveal that gene duplication in eukaryotes is pervasive, providing a primary source for the emergence of new genes. Nevertheless,
https://academic.oup.com/gbe/article/doi/10.1093/gbe/evag077/8566041
22 days ago
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Haoran Cai
Genome Biology and Evolution
3 days ago
This month's GBE Highlight by SMBE
@haorancai.bsky.social
focuses on the recent paper by Bastian, Enard & Lartillot on the nearly neutral theory. "Bridging Micro- and Macroevolution: Phylogenomic Evidence for the Nearly Neutral Theory in Mammals" 🔗
doi.org/10.1093/gbe/evag074
#genome
#evolution
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Haoran Cai
PolyAdapt STN
13 days ago
Join us for a seminar by Dr. Francois Mallard (Institute de Biologie, École Normale Supérieure, Paris-France) about 'The genetic architecture of phenotypic plasticity' on 30th April, 2026, 3 pm CET. Zoom link here: polygenic-adaptation-network.org/seminars/
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Haoran Cai
Genome Biology and Evolution
17 days ago
@haorancai.bsky.social
and Des Marais investigated gene expression variability in duplicate genes, suggesting a mechanism facilitating gene expression divergence, functional gains, and duplicate retention following small-scale duplications. 🔗
doi.org/10.1093/gbe/evag077
#genome
#evolution
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Dynamics of Expression Variability Contribute to Retention of Small-Scale vs. Whole-Genome Duplicates
Abstract. Genome analyses reveal that gene duplication in eukaryotes is pervasive, providing a primary source for the emergence of new genes. Nevertheless,
https://doi.org/10.1093/gbe/evag077
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Haoran Cai
Genome Biology and Evolution
21 days ago
Bastian, Enard & Lartillot tested predictions of the nearly-neutral theory of molecular evolution across time scales, confirming the role of effective population size in tuning selection efficacy in placental mammals. 🖌️ Léa Backory 🔗
doi.org/10.1093/gbe/evag030
#genome
#evolution
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🚨 New Paper 🚨 Thrilled to share new work with
@evodaveo.bsky.social
eo.bsky.social
! We dive into the evolution of gene duplicates and demonstrate how expression variability might contribute to retention following duplication. Read the full article here:
academic.oup.com/gbe/article/...
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Dynamics of Expression Variability Contribute to Retention of Small-Scale vs. Whole-Genome Duplicates
Abstract. Genome analyses reveal that gene duplication in eukaryotes is pervasive, providing a primary source for the emergence of new genes. Nevertheless,
https://academic.oup.com/gbe/article/doi/10.1093/gbe/evag077/8566041
22 days ago
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Haoran Cai
Sergey Kryazhimskiy
23 days ago
We posted a new theory preprint. I am very interested to hear what the community thinks about it. We looked at the dynamics of evolution on several (simple) models of modular genotype-phenotype-fitness maps and found that populations approach a quasi-steady state we call "module-selection balance".
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Haoran Cai
Quentin Horta
25 days ago
Our work as Editor's choice in
@evolletters.bsky.social
!✨️ Developmental biases & micro- to macroevution in the lizard skull 🦎
academic.oup.com/evlett/advan...
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Haoran Cai
Kim Cooper
29 days ago
The Cooper lab is hiring a postdoc with a strong background in mouse genetics and molecular biology to advance.our gene drive work. Must be extremely organized, engineering-minded, and outcomes-oriented. Spread the word and have interested candidates email me directly.
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Haoran Cai
Nora Martin
about 1 month ago
New group website:
www.noramartin-lab.com
Get in touch if you are interested in joining the group, or know anyone who might be 📮
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HOME | Martin Lab
https://www.noramartin-lab.com/
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Haoran Cai
Lisandro Milocco
about 2 months ago
How does development shape the variation evolution can act on? In our new paper in
@pnas.org
, we bridge developmental dynamics and quantitative genetics, linking dynamical models of phenotype formation with the statistical parameters used to study evolutionary change
www.pnas.org/doi/10.1073/...
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Bridging developmental and statistical approaches to variation and evolution | PNAS
Phenotypic variation is the raw material for evolutionary diversification and adaptation. However, a critical gap remains in evolutionary theory be...
https://www.pnas.org/doi/10.1073/pnas.2529820123
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Neda Barghi
about 2 months ago
Join us for this exciting seminar and hear about redundancy in genome-wide epistatic interactions!
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Robin Pranter
about 2 months ago
How does development affect the evolutionary process? Join our symposium at
www.evodevoconference26.com
in Glasgow this June. We have a strong lineup of invited speakers, chaired by me and
@milocco.bsky.social
Submit your abstract before Thursday! ⏰
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Masahito Tsuboi
10 months ago
Now online Communications Biology! We showed that variation aligns across biological levels. We proposed that
#macroevolution
mould
#developmentalbias
with a cascading effect on variation.
#Microevolution
, then, may be a result—not a cause of—macroevolution.
nature.com/articles/s42...
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Haoran Cai
David Lowry
about 2 months ago
Weighted Gene Co-expression Network Analysis (WGCNA) has been the go to program for analysis of gene expression modules for nearly two decades but it is a difficult to implement. To make it easier to use WGCNA, I used Codex to build a human in the loop agentic workflow.
github.com/lowrylab/WGC...
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GitHub - lowrylab/WGCNA_agent
Contribute to lowrylab/WGCNA_agent development by creating an account on GitHub.
https://github.com/lowrylab/WGCNA_agent
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Haoran Cai
Lee Hsiang Liow (廖珕庠)
about 2 months ago
2 PhD & 1 postdoc available at BioM in Oslo
www.uio.no/english/rese...
Interdisciplinary methods to model and govern biodiversity under uncertainty. Re-post widely! Work with statistical ecologists Olav Skarpaas (Natural History Museum Oslo
@uio.no
)
@t-ergon.bsky.social
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Methods for knowledge-based biodiversity monitoring and management under uncertainty (BioM) - UiO:Life Science
BioM develops new interdisciplinary methods to model and govern biodiversity under uncertainty, combining ecology, statistics, and philosophy. The project delivers predictive tools, normative framewor...
https://www.uio.no/english/research/strategic-research-areas/life-science/research/convergence-environments/biom/
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Jenn Coughlan
2 months ago
Promises to be poppin (🍿) BUT SRSLY PLEASE REGISTER, WE ARE SO EXCITED!!!!!!!!!!!!
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Haoran Cai
bioRxiv Evolutionary Biology
2 months ago
A pleiotropic hitchhiking model recapitulates alignments between fly wing divergence and variation
https://www.biorxiv.org/content/10.64898/2026.02.19.706930v1
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Haoran Cai
Evolution
7 months ago
Don't miss this issue's Editor's Choice article: "Gene network topology drives the mutational landscape of gene expression" by Sylvain Pouzet & Arnaud Le Rouzic. Free to read here:
doi.org/10.1093/evol...
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Haoran Cai
Genetics Society of America
3 months ago
In
#GENETICS
, a new model developed by
@christianlandry.bsky.social
and colleagues examines how molecular dominance determines total protein activity and contributes to phenotypic dominance.
buff.ly/CfaTDp7
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Haoran Cai
Lee Hsiang Liow (廖珕庠)
2 months ago
Apply for PhD Fellowships at the Centre for Planetary Habitability in Oslo! There are projects for geologists, paleontologists, paleobiologists, astrobiologists, stats-y folks, geoscientists and planetary folks!
www.jobbnorge.no/en/available...
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PhD Research Fellows in geosciences, planetary or exoplanetary sciences – up to three positions (294610) | University of Oslo
Job title: PhD Research Fellows in geosciences, planetary or exoplanetary sciences – up to three positions (294610), Employer: University of Oslo, Deadline: Sunday, March 1, 2026
https://www.jobbnorge.no/en/available-jobs/job/294610/phd-research-fellows-in-geosciences-planetary-or-exoplanetary-sciences-up-to-three-positions
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Haoran Cai
Charlie Hale
4 months ago
Our paper is out in MBE!
doi.org/10.1093/molb...
We tracked TF binding site evolution across 589 grass species, and found that while binding preferences are pretty stable over 80 million years of evolution, individual binding sites have turned over a lot. Thread here:
bsky.app/profile/char...
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Jeffrey Ross-Ibarra
3 months ago
Fun news!
@gcbias.bsky.social
and I are teaching a 2-week online population genetics workshop this summer to raise money for the Center for Population Biology at UC Davis. We're trying to gauge interest -- please fill this out if you might be interested! And please share broadly!
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Davis Summer Population Genomics Program
Want to learn population genetics? Please fill out this form to indicate your potential interest in a 2-week intensive online summer population genetics course taught by Jeffrey Ross-Ibarra and Graham...
https://docs.google.com/forms/d/1PqXEKkW_0HXbdge1yXKGXFIf7NDjH72jTfIaEZThHhA/edit
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Molecular Biology and Evolution
3 months ago
The recent MBE Review on the evolution of dark skin in humans is the focus of January's Highlight. Highlight: Dark skin and cancer suppression in humans—an evolutionary spandrel? 🔗
doi.org/10.1093/molbev/msag012
#evobio
#molbio
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Haoran Cai
Facundo Romani
3 months ago
This is a very special paper for me. I had the idea of combining transcription factor binding with chromatin in 2016/8. It took some time, but thanks to Fred and Vikas, we can finally share the story in
@plos.org
Genetics looking at chromatin states in Arabidopsis and Marchantia.
#PlantScience
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Chromatin state architecture governs transcription factor accessibility across plant genomes
Author summary In eukaryotes, DNA is tightly associated with histone proteins. Histone covalent modifications and histones isoforms, also called histone variants provide most of the complexity of chro...
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1012015
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Jeffrey Ross-Ibarra
3 months ago
PEQG! My favorite conference ever*. Single session, fantastic talks, great discussions. Only once every 2 years. And in the best conference location too! Abstract deadline coming up Feb 5! *Disclosure: I am required to say it's the best conference because it is and I told my mom I wouldn't lie.
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Homepage - 2026 Population, Evolutionary, and Quantitative Genetics Conference
Visit our website to learn more.
https://genetics-gsa.org/peqg-2026/
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Haoran Cai
Rob Waterhouse
4 months ago
A genome-wide comparison of
#gene
regulatory sequences & embryonic gene expression in arachnids - new insights into the impact of the arachnopulmonate whole
#genome
duplication
academic.oup.com/gbe/article/...
#biodiversity
#genomics
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Assessing the Impact of Whole Genome Duplication on Gene Expression and Regulation During Arachnid Development
Abstract. Whole genome duplication (WGD) generates a new genetic material that can contribute to the evolution of developmental processes and phenotypic di
https://academic.oup.com/gbe/article/17/12/evaf238/8371957
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Haoran Cai
Deepa Agashe
4 months ago
How do bacteria deal with double costs? And how costly are unusual levels of mistranslation anyway? In short - antibiotics are more of an issue than less/more mistranslation, but the latter changes how populations deal with antibiotics. For the long story, check out our new paper!
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Haoran Cai
David Lowry
5 months ago
I am currently searching for a new postdoctoral researcher to study the evolution, genetics, and physiology of cold acclimation and freezing tolerance in switchgrass at Michigan State University. This work will be funded by a newly funded five-year DOE grant.
careers.msu.edu/jobs/researc...
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Research Associate-Fixed Term - East Lansing, Michigan, United States
Position Summary The Lowry Lab at Michigan State University is searching for a postdoctoral research associate to conduct molecular and physiological experiments to understand the causes of genetic va...
https://careers.msu.edu/jobs/research-associate-fixed-term-east-lansing-michigan-united-states-7aedcee9-6ddc-4194-a6fc-8ee66459004d
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John Stinchcombe
6 months ago
TWO curatorial positions at the Royal Ontario Museum, Toronto, ON, Canada. Curator of Birds, and Curator of Plants and Sustainability... please pass the word and amplify!
royalontariomuseum.applytojob.com/apply/XBR2Yc...
&
royalontariomuseum.applytojob.com/apply/Sf2iAO...
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Curator of Birds - Royal Ontario Museum - Career Page
Apply to Curator of Birds at Royal Ontario Museum in Toronto, ON, Canada.
https://royalontariomuseum.applytojob.com/apply/XBR2YcQAfM/Curator-Of-Birds
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Haoran Cai
Chuliang Song
6 months ago
Ecology faces an accumulation of models but not an accumulation of confidence. Our new paper w/ Jonathan Levine
www.nature.com/articles/s41...
in
@natecoevo.nature.com
introduces a rigorous test rooted in queueing theory to falsify inadequate models and build confidence in useful ones.
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Rigorous validation of ecological models against empirical time series - Nature Ecology & Evolution
Validating theoretical models against empirical data presents challenges. Here the authors present an assumption-light method to validate ecological models against time series data, along with a dedic...
https://www.nature.com/articles/s41559-025-02864-8
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Claudia Bank
6 months ago
We have an open PhD position (application deadline 9 January 2026) in "Theory of fitness landscapes" at
@unibe.ch
🤓⛰️📊👩💻🎓:
banklab.github.io/positions/
Please share widely!
#QueerInSTEM
#DisabledInSTEM
#BlackInSTEM
#WomenInSTEM
#CarersInSTEM
#AcademicSky
#HigherED
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I'm thrilled to be selected and grateful to be able to contribute to our community
@official-smbe.bsky.social
Looking forward to new connections and future initiatives!
@official-smbe.bsky.social
@molbioevol.bsky.social
@genomebiolevol.bsky.social
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6 months ago
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Maitreya Dunham
6 months ago
Incredible new paper from
@schacherer.bsky.social
et al
rdcu.be/eLcTH
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From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes
Nature - A newly compiled atlas of species-wide structural variants and gene-based and graph pangenomes derived from highly complete assemblies of genomes from 1,086 natural isolates enable...
https://rdcu.be/eLcTH
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Graham Coop
6 months ago
We're excited to be recruiting an NIH funded postdoc to work in the Coop lab at UC Davis. We're specifically interested in candidates who are want to work at the intersection of human genetics, GWAS, and population genetics modeling. Please RT
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Fabio A. Machado
6 months ago
🚨🚨JOB ALERT 🚨🚨 Fresh new position in Comparative Biology at OSU! We're looking for a comp. biologist, especially those who investigate biomechanics, functional anatomy, neuroanatomy, or morphological development. Feel free to ask me any questions!
jobs.okstate.edu/jobs/assista...
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Assistant Professor of Biology - Stillwater, Oklahoma, United States
Campus OSU-Stillwater Contact Name & Email Dr. Michael Reichert,
[email protected]
Work Schedule TBD Appointment Length Regular Continuous/Until Further Notice Hiring Range $85,000 - $8...
https://jobs.okstate.edu/jobs/assistant-professor-of-biology-stillwater-oklahoma-united-states
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Haoran Cai
Ben Hopkins
6 months ago
The Hopkins Lab (hopkins-lab.com) at the University of Florida is looking to recruit a postdoc to work on the genetics of organ function and evolution across Drosophila and beyond. Please visit
tinyurl.com/vcsjpmzz
or email me for more info. And please RT or send to anyone who might be interested!
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Matt Rockman
7 months ago
C. elegans is a real animal and we set out to understand how it comes to have its distinctive biogeography. Its ancestral center of diversity is in the higher elevation forests of Hawaii. Its closest relatives are spread across east Asia. Did they travel from Asia? [Preprint 🧵]
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Sergey Kryazhimskiy
7 months ago
Dear colleagues!
@davidmccandlish.bsky.social
and I are serving as guest editors for the new special issue of GENETICS on fitness landscapes:
doi.org/10.1093/gene...
Submissions are due on March 18, 2026. Please spread the word! And reach out if you have questions.
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The Fitness Landscape: A Call for Papers
Ruth Isaacson; The Fitness Landscape: A Call for Papers, Genetics, , iyaf206, https://doi.org/10.1093/genetics/iyaf206
https://doi.org/10.1093/genetics/iyaf206
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Tanja Slotte
8 months ago
*Postdoc in Evolutionary genomics at Stockholm University* We are recruiting a postdoc for a large interdisciplinary project to investigate evolutionary drivers and genomic consequences of pollen evolution in response to pollination mode shifts in flowering plants. 1/5
su.varbi.com/what:job/job...
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The Company of Biologists
7 months ago
Calling early-career developmental biologists! Apply for a funded place at our
#Workshop
, Novelty, Co-option and Divergence During Gene Network Evolution. Application deadline: 5 December
www.biologists.com/workshops/ju...
#DevBio
#BiologistsWorkshops
#Collaboration
#Networking
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Jonathan Basile
7 months ago
I'm excited to share with you all a conference I'm planning Oct. 10-12: Dialectical Biology Today: Legacies of Richard Lewontin. It will be hybrid in Toronto and on zoom, so please join us however you can! Register for zoom link here:
ihpst.utoronto.ca/events/diale...
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Christian Landry
8 months ago
Really excited to share our latest paper led by
@simonaube.bsky.social
. Fascinating results examining whether regulatory mutations can lead to adaptation as fast as coding mutations do.
#mevosky
#evobio
#evoSky
www.biorxiv.org/content/10.1...
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Adaptation is less accessible through mutations in promoters than in coding sequences when large effect sizes are needed
Mutations within promoters and coding sequences are both involved in adaptation, but their relative contributions remain to be compared directly. Using the fungal enzyme cytosine deaminase, we examine...
https://www.biorxiv.org/content/10.1101/2025.09.09.675213v1
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Genome Biology and Evolution
8 months ago
We are proud to present the new logo of Genome Biology and Evolution! 🙌 Our new face reflects our continued commitment to serving the fields of genomics and evolutionary biology as a society journal belonging to
@official-smbe.bsky.social
#genome
#evolution
#science
#biology
#societyjournal
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Daniel Bolnick
8 months ago
The next stand-alone meeting of the American Society of Naturalists
@asn-amnat.bsky.social
will be on the East Coast!!! Mark your calendars for January 8-12, 2027 and we'll talk evolution, ecology, behavior, and integrative organismal biology at
www.themansionatglencove.com/meeting-venues
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VENUES | The Mansion at Glen Cove | Luxury Mansion Wedding Venues & Events
Discover premium meeting spaces at The Mansion at Glen Cove. Our mansion is perfect for corporate events with elegant surroundings and modern amenities.
https://www.themansionatglencove.com/meeting-venues
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Laura K Hayward
8 months ago
Full paper now out in GENETICS: The relationship between sexual dimorphism and intersex correlation: do models support intuition? 🔗
academic.oup.com/genetics/art...
#Evolution
#QuantGenetics
@GeneticsGSA
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The relationship between sexual dimorphism and intersex correlation: do models support intuition?
Abstract. The evolution of sexual dimorphism (the difference in average trait values between females and males, SD), is often thought to be constrained by
https://academic.oup.com/genetics/article/doi/10.1093/genetics/iyaf175/8239415
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Mike Moore
8 months ago
Are you looking for a PhD position and want to spend your summers in the Rocky Mountains? My lab
@cudenverclas.bsky.social
is looking for 1 PhD student to work on a NSF-funded project to study elevational range shifts in Colorado! 🧪🌍🐙 Apply by Nov 1! Details here
docs.google.com/document/d/1...
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2025 - Hypoxia PhD job ad
The Moore lab at the University of Colorado Denver is searching for 1 Ph.D. student to study the elevational limits of dragonflies in Colorado (http://moore-evo-eco.weebly.com). This position is fully...
https://docs.google.com/document/d/1ZyNUYyRDLJszDjQF_2KkbmRxITr4Zr1fGw441Ntp904/edit?usp=sharing
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Tami Lieberman
9 months ago
We are on the lookout for postdocs for two different projects at the intersection of ecology, evolution, and the human microbiome. See thread for more information and reach out!
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An updated version
www.biorxiv.org/content/10.1...
. Don't hesitate to talk to me at SMBE2025 if you are interested!!
#SMBE25
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9 months ago
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Looking forward to meeting old and new friends in Beijing!!
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9 months ago
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Roli Roberts
9 months ago
Elegant empirical validation of a theoretical expectation that changing your mutation bias allows you to access more beneficial mutations. From
@deepaagashe.bsky.social
& colleagues in
@plosbiology.org
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