Aaron and the Hoskins Lab at UW Madison
@uwmadisonrna.bsky.social
đ¤ 582
đĽ 401
đ 708
Interested in science, RNA, splicing, and single molecule biophysics.
reposted by
Aaron and the Hoskins Lab at UW Madison
The Lewis Lab
about 8 hours ago
How do cells tune PRC2 allostery? We find EZH2 Ser21-phos restrains PRC2 adoption of the compact active state. Loss of this restraint promotes H3K27me3, redistributes cPRC1, and impairs differentiation. New bioRxiv with
@kasinath-lab.bsky.social
&
@garcialabms.bsky.social
!
tinyurl.com/4369kmh2
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Heading to Boston soon to celebrate my graduate advisor's (and former
@uwbiochem.bsky.social
faculty member) birthday. Happy birthday JS! Here she is celebrating with some
@uwmadison.bsky.social
Babcock Dairy ice cream (orange custard chocolate chip of course!)
about 18 hours ago
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Another twist!
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1 day ago
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Very happy to announce that Tom Perkins and I will be organizing the "Physics of Life at the Nanoscale" meeting at the Aspen Center for Physics Jan 3-8, 2027. Please save the date!
3 days ago
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Aaron and the Hoskins Lab at UW Madison
UWâMadison Department of Biochemistry
4 days ago
Congratulations to 52 exceptional biochemistry students recognized with scholarships, fellowships, and research support this spring! Their achievements are made possible in part by the generosity of donors and strong support from department and campus partners.
biochem.wisc.edu/2026/06/01/b...
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Biochemistry Department, Campus Recognize 52 Students with Scholarships, Fellowships, and Support in Spring 2026
The annual reception celebrated outstanding undergraduate and graduate biochemistry students.
https://biochem.wisc.edu/2026/06/01/biochemistry-department-campus-recognize-52-students-with-scholarships-fellowships-and-support-in-spring-2026/
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From Tom Perkins and coworkers Force-Induced Ankle Opening Reveals Mechanical Stabilization of the Ankle of Human β-Cardiac Myosin | ACS Nano
pubs.acs.org/doi/10.1021/...
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Force-Induced Ankle Opening Reveals Mechanical Stabilization of the Ankle of Human β-Cardiac Myosin
Human β-cardiac myosin drives contraction in the heart. Extensive biophysical and single-molecule studies have quantified myosinâs chemo-mechanical cycle, which generates âź5 nm of displacement and 5â7 pN of force. Myosinâs 9 nm-long, Îą-helical lever arm is rigidified by bound essential and regulatory light chains (ELC and RLC). Numerous pathogenic mutations and sequence-conservation patterns within the lever arm where the RLC binds (LARLC) belie the overly simplified view that the lever arm acts solely as a rigid rod that transduces ATP hydrolysis into motion. Structural studies have shown that myosin adopts an interacting-heads motif (IHM), which inhibits motor activity and mechanically strains the RLC complex, consisting of the RLC bound to the LARLC. Alteration in the configuration of the RLC complexâs âankleââa sharp kink in the lever armâis hypothesized to modulate the propensity of myosin to enter the IHM. To investigate the complexâs mechanical stability, we developed a single-molecule atomic-force microscopy assay with three different pulling geometries: pulling across the LARLC, the RLC, and the RLC complex. When pulling across the LARLC by applying force to its N and C termini, the mechanical dissociation of the RLC was resolved along with two intermediates. Coarse-grained Brownian dynamics detailed these molecular configurations as the opening of myosinâs ankle and the preferential dissociation of one of the RLCâs two EF-hand domains. Moreover, the linker between the EF-hand domains forms an interface with an RLC N-terminal loop. This interface stabilized the native acute ankle angle against opening. Pulling across the RLC and the RLC complex revealed different unfolding pathways, each with one intermediate. Looking forward, these assays can probe for the effects of pathogenic mutations and phosphorylation on the nanomechanics of the RLC complex.
https://pubs.acs.org/doi/10.1021/acsnano.5c22720
4 days ago
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Aaron and the Hoskins Lab at UW Madison
Hannah Wayment-Steele
4 days ago
In the W-S lab's first preprint, we describe how genomic language models know something about RNA thermodynamics. Though we think this is cool, things get tricky! A growing practice for interpreting LMs is to perturb input tokens, often called "Categorical Jacobian": đ
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Aaron and the Hoskins Lab at UW Madison
Carolyn Bertozzi
5 days ago
Excellent, concise summary of the threats of recent OMB proposal and suggested action items. DEADLINE TO SUBMIT PUBLIC COMMENTS IS JULY 13, 2026 AT 11:59 PM EASTERN TIME
elizabethginexi.substack.com/p/what-we-ne...
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What We Need to do NEXT: OMBâs Proposed Federal Financial Assistance Rule (OMB-2026-0034)
What OMBâs Proposed Federal Financial Assistance Rule Means in Practice
https://elizabethginexi.substack.com/p/what-we-need-to-do-next-ombs-proposed
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reposted by
Aaron and the Hoskins Lab at UW Madison
Molecular Cell
6 days ago
Online Now: Mechanism of RACK1-dependent ZAKÎą activation at stalled and collided ribosomes Online now:
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Mechanism of RACK1-dependent ZAKÎą activation at stalled and collided ribosomes
The ribotoxic stress response is activated upon sensing of impaired translation by the MAP3 kinase ZAKÎą. Vind et al. demonstrate how ZAKÎą surveils the translation process and interacts with elongating, stalled, and collided ribosomes. ZAKÎą activation depends on ribosome-templated sequestration of inhibitory domains, dimerization, and activation-loop autophosphorylation in trans.
http://dlvr.it/TSnllj
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Super cool paper from Thierot, Belliveau and coworkers. Very curious to know how galvanin works... the glycosylation explanation seems incomplete. Galvanin (TMEM154) is an electric-field sensor for directed cell migration: Cell
www.cell.com/cell/fulltex...
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Galvanin (TMEM154) is an electric-field sensor for directed cell migration
Galvanin is an electric-field sensor that links electrical cues to directed migration in rapidly moving cells.
https://www.cell.com/cell/fulltext/S0092-8674%2826%2900461-7
8 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
RNA Therapeutics Institute
8 days ago
New siRNA therapy led by Claudio Punzo, Anastasia Khvorova, & Julia Alterman has potential to halt vision loss in age-related macular degeneration (AMD)
buff.ly/EfogUGc
@UMassChan.bksy.social
#siRNATx
#RNATx
#RNAmedicine
#science
#AMD
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reposted by
Aaron and the Hoskins Lab at UW Madison
10 days ago
Amazing job opportunity at Brandeis - we are looking for a new manager of our Light Microscopy Facility! Cool instruments, a great community to work with, lots of opportunities for growth - please circulate!
brandeis.wd5.myworkdayjobs.com/en-US/Jobs/j...
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Light Microscopy Facility Manager
The main purpose of this job is to bring cutting-edge light microscopy research approaches to Brandeis researchers and oversee the day-to-day operations of the Brandeis light microscopy facility. The ...
https://brandeis.wd5.myworkdayjobs.com/en-US/Jobs/jobs/details/Light-Microscopy-Facility-Manager_R0013205-1
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reposted by
Aaron and the Hoskins Lab at UW Madison
MRC Laboratory of Molecular Biology
10 days ago
Led by Hannah Ochner,
@tbharat-lab.bsky.social
âs group have developed correlated
#cryoEM
& mass spectrometry imaging, capable of sub-cellular chemical mapping. With
@kiranrpatil.bsky.social
âs group, they have imaged the cellular uptake of forever chemicals.
mrclmb.ac.uk/news-events/...
#LMBResearch
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OpenSplice: the impact of half a million mutations on the alternative splicing of 600 human exons Gioia Quarantani et al.
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.22.727141v1
11 days ago
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Aaron and the Hoskins Lab at UW Madison
Cassandra Hayne
11 days ago
Looking forward to sharing this story in person at
#RNASociety
on Friday! I'm giving a talk at the RNA and Disease session and Liza will have a poster (ID 528) on Friday evening.
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reposted by
Aaron and the Hoskins Lab at UW Madison
Alejandro Montenegro
12 days ago
Me, with pants from Old Navy.
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Splicing of ultraconserved poison exons controls mitotic fidelity and stem cell viability Nathan K Leclair, Olga Anczukow, et al.
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.19.726407v1
14 days ago
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New reduced spliceosomes from the Rader group! Dramatically reduced spliceosome, intronome, and splicing efficiency in Cyanidiococcus yangmingshanensis and Cyanidium caldarium Viktor A. Slat, Martha R. Stark, Stephen Rader
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.17.725761v1
15 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
Dr Kathleen Millen
16 days ago
đ¨đ§Şđ§ľURGENT INPUT NEEDED: NIH asks input for next strategic plan-including emphasis on non-animal models (NAMs) to replace animals. Per NIH insider, anti-animal responses now outnumber scientists 200-700x. Please please provide input. Deadline: May 26, 11:59 PM ET.
grants.nih.gov/news-events/...
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NIH Seeks Input on Framework for Next NIH-Wide Strategic Plan | Grants & Funding
https://grants.nih.gov/news-events/nih-extramural-nexus-news/2026/03/nih-seeks-input-on-framework-for-next-nih-wide-strategic-plan
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This is a super important paper that provides key info about RNAs containing pseudo U. Nearest Neighbor Parameters for Estimating the Folding Stability of RNA Including Pseudouridine Thandolwethu S. Shabangu, David Mathews et al....
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.16.725682v1
17 days ago
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Phosphorylation-mediated regulation of the essential splicing factor PUF60 Mohammed S Ali, Paul L Boutz
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.17.725788v1
18 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
Karolin Luger
18 days ago
Out today - structure of the human HIRA histone chaperone complex bound to nucleosomes. Ever wondered how nucleosomes are assembled in the wake of transcription? It takes a 'hulk of a protein complex'. Work by the amazing Wei Tian
weetian558.bsky.social
.
www.biorxiv.org/content/10.6...
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Le Tour de RNA was an awesome success! Thanks to everyone who helped us celebrate Sam, RNA, and NMR!
19 days ago
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genesdev.cshlp.org/content/earl...
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Evolutionarily conserved spliceosomeâexosome pathway in nuclear mRNA surveillance
A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields
https://genesdev.cshlp.org/content/early/2026/05/14/gad.353594.125.abstract
20 days ago
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Somehow this escaped by radar! This likely explains some very odd single molecule results we obtained (but never published) from making extracts from yeast grown in nutrient poor conditions... Cells resist starvation through a nutrient stress splice switch
academic.oup.com/nar/article/...
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Cells resist starvation through a nutrient stress splice switch
Abstract. Introns are common features of eukaryotic genes, typically removed through splicing to produce functional RNAs. In yeast, some introns play roles
https://academic.oup.com/nar/article/53/12/gkaf525/8171873
21 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
Kurianlab
21 days ago
www.nature.com/articles/s41...
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Widespread DNA off-targeting confounds RNA chromatin occupancy studies - Nature Biotechnology
Many long noncoding RNAâDNA binding peaks detected using common assays arise from technical artifacts.
https://www.nature.com/articles/s41587-026-03130-3
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LOL Dual-Lipa: A sequential multi-omic subcellular landscape map of mouse heart Haoyun Fang, Alin Rai, Kevin Huynh, Sadegh Eslami, Thy Duong, Alexandra Faulkner, Peter Meikle, David Greening bioRxiv 2026.05.11.724441; doi:
doi.org/10.64898/202...
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Dua Lipa's Oh Wow Smirk
ALT: Dua Lipa's Oh Wow Smirk
https://static.klipy.com/ii/4e7bea9f7a3371424e6c16ebc93252fe/61/53/H1jj0BCpRzjv0jE.gif?hh=392&ww=498&mp4=hCpeuyOL9KMkwC&webm=Ylb4XC2O2FAIEPFTzcIa
21 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
Igor Ulitsky
21 days ago
Now out
@natbiotech.nature.com
! Do lncRNAs commonly bind 1000s of genomic sites? Maybe they do, but the dozens of studies that report genomic binding maps of lncRNAs are deeply flawed, with probes binding suprious DNA sites rather than RNA-bound ones.
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Can't wait for the 43rd Steenbock Symposium "Le Tour de RNA" on Saturday!
23 days ago
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Strand invasion mechanism for U2/BS pairing
pubmed.ncbi.nlm.nih.gov/42120046/
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U2 snRNP recognizes the branch site through a loaded-spring strand-invasion mechanism - PubMed
Recognition of the branch sequence (BS) by the U2 snRNP is a pivotal step in pre-mRNA splicing and spliceosome assembly. Structural studies suggest that BS recognition occurs through a toehold-mediate...
https://pubmed.ncbi.nlm.nih.gov/42120046/
23 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
Katie Hinde
25 days ago
"For too long, the university has ignored the wisdom of the donor class and hired based on academic excellence. Regrettably, this has led to the underrepresentation of discredited viewpoints in elite higher education."
www.mcsweeneys.net/articles/wer...
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Weâre Diversifying the University by Hiring More Crackpots
âFor too long, the university has ignored the wisdom of the donor class and hired based on academic excellence. Regrettably, this has led to the underreprese...
https://www.mcsweeneys.net/articles/were-diversifying-the-university-by-hiring-more-crackpots
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TBH, I probably would also have included structural elucidation of the spliceosome as a key major technical advance for studying mechanisms of alternative splicing...
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24 days ago
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Aaron and the Hoskins Lab at UW Madison
Nature Reviews Genetics
27 days ago
FYI: New online! Tools and tactics for studying alternative splicing
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Tools and tactics for studying alternative splicing
Nature Reviews Genetics, Published online: 17 April 2026; doi:10.1038/s41576-026-00952-4In this Review, Sousa-LuĂs and Carmo-Fonseca discuss the various tools available to detect and quantify alternative splicing, functionally test splice isoforms and investigate the link between genetic variation, splicing and disease.
http://dlvr.it/TSRvp8
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reposted by
Aaron and the Hoskins Lab at UW Madison
Charlotte Fare
24 days ago
RNA imbalance as a hallmark of cellular ageing
rdcu.be/fikJl
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RNA imbalance as a hallmark of cellular ageing
Nature Cell Biology - This Perspective highlights the failures of an ageing cell in properly maintaining mRNA health at the various steps of the mRNA life cycle that result in vulnerability to...
https://rdcu.be/fikJl
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Amazing insight from David Brow
@bmolchem.bsky.social
on potential mechanisms of U6 snRNA dysfunction in retinitis pigmentosa! Plus a potential therapeutic strategy based on some classic nucleic acid biochemistry experiments and competing RNA structures.
rnajournal.cshlp.org/content/earl...
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Past studies suggest potential therapies for newly discovered retinitis pigmentosa mutations in U6 and U4 snRNAs
A monthly journal publishing high-quality, peer-reviewed research on all topics related to RNA and its metabolism in all organisms
https://rnajournal.cshlp.org/content/early/2026/05/11/rna.081086.126.abstract
25 days ago
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Please don't make up what you think the acronym means... Syf2 does not mean spliceosome associated factor 2... It comes from a yeast screen, SYnthetic lethal with cdc Forty...
pubmed.ncbi.nlm.nih.gov/42094020/
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Single-cell sequencing and machine learning-based prediction of spliceosome-associated factor 2 may represent potential targets for osteoarthritis - PubMed
Our research identified a previously unreported potential target for osteoarthritis, SYF2, through single-cell sequencing and machine learning. This target is likely to be related to cell apoptosis.
https://pubmed.ncbi.nlm.nih.gov/42094020/
25 days ago
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Protocol for designing and interpreting minigene assays to validate candidate splice altering variants Whitney Whitford, Suzanne M Musgrave, Russell G Snell, Jessie C Jacobsen
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.05.723105v1
25 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
Craig Kaplan
25 days ago
Really important preprint from
@mcmanuslabrna.bsky.social
@gemmaemay.bsky.social
and should be read by anyone interested in IRES elements. More evidence that vast majority of endogenous elements nominated as IRES do not have expected activity in stringent, RNA based assays 1/
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Aaron and the Hoskins Lab at UW Madison
Sjors Scheres
26 days ago
It's great to see this important paper by Alexander Shtyrov out. If you hadn't read it yet on
@biorxivpreprint.bsky.social
, you can now do so in
@pnas.org
. đ
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reposted by
Aaron and the Hoskins Lab at UW Madison
Craig M. Crews
27 days ago
First PROTAC gains FDA approval, bolstering targeted protein degradation and induced proximity ambitions
www.nature.com/articles/d41...
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First PROTAC gains FDA approval, bolstering targeted protein degradation and induced proximity ambitions
Discover the worldâs best science and medicine | Nature.com
https://www.nature.com/articles/d41573-026-00078-6
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www.nature.com/articles/s41...
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U2af1S34F and U2af1Q157R myeloid neoplasm-associated hotspot mutations induce distinct hematopoietic phenotypes in mice - Leukemia
Leukemia - U2af1S34F and U2af1Q157R myeloid neoplasm-associated hotspot mutations induce distinct hematopoietic phenotypes in mice
https://www.nature.com/articles/s41375-026-02974-7
28 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
Christine Mayr
28 days ago
If you want to know what 3â˛UTRs with long conserved sequence stretches do, check out our BioRxiv preprint
doi.org/10.64898/202...
. They form functional intermolecular 3â˛UTR-3â˛UTR interactions that enable co-folding of proteins to rapidly induce transcriptional programs.
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Aaron and the Hoskins Lab at UW Madison
UWâMadison Department of Biochemistry
29 days ago
Join us on May 11 for Biochemistry Colloquium with Gustavo Silva.
@thesilvalab.bsky.social
investigates how ubiquitin controls cellular response to oxidative stress. More info:
today.wisc.edu/events/view/...
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Biochemistry Colloquium: Gustavo Silva | UWâMadison Events Calendar
https://today.wisc.edu/events/view/220629
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Wow! They even got the product complex with PPi bound! From Seth Darst's lab and a second paper from Dong Wang's lab as well. Structural basis for multi-subunit DNA-dependent RNA polymerase catalytic activity: Molecular Cell
www.cell.com/molecular-ce...
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Structural basis for multi-subunit DNA-dependent RNA polymerase catalytic activity
In Mueller et al. the authors capture and visualize the native enzyme-substrate (Michaelis) and product complexes of nucleotide addition by bacterial RNA polymerase. Substrate coordination in a transi...
https://www.cell.com/molecular-cell/fulltext/S1097-2765%2826%2900209-1
29 days ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
McManus Lab at CMU
29 days ago
Happy to announce publication of a collaboration between my group, Neelam Sen's lab and Alan Hinnebusch at NAR combining FACS-uORF (MPRA) and Ribo-seq to clarify how Ded1 enhances mRNA translation. Great team effort!
academic.oup.com/nar/article/...
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Suppression of upstream ORF translation is not a widespread mechanism of translational stimulation by yeast helicase Ded1
Abstract. Ded1 is an essential DEAD-box helicase in yeast that broadly stimulates translation initiation and is critical for messenger RNAs (mRNAs) with st
https://academic.oup.com/nar/article/54/9/gkag427/8670141?utm_source=authortollfreelink&utm_campaign=nar&utm_medium=email&guestAccessKey=
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reposted by
Aaron and the Hoskins Lab at UW Madison
Jeremy Berg
29 days ago
NPR story about multi-year funding, few NOFOs, and delays with me, Elizabeth Ginexi, and
@docsirianni.bsky.social
www.npr.org/2026/05/05/n...
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The Trump administration is finding new ways to withhold federal funding for science
Billions in funding were cut under President Trump were restored in 2026. Now, watchdogs say the administration is finding other ways to withhold money â and scientists are feeling the consequences.
https://www.npr.org/2026/05/05/nx-s1-5808286/the-trump-administration-is-finding-new-ways-to-withhold-federal-funding-for-science
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reposted by
Aaron and the Hoskins Lab at UW Madison
Ewerslab
about 1 month ago
New paper out! Left-handed DNA cannot bind to natural, right-handed DNA. This leads to lower background if it is used as a probe in DNA-PAINT. Using Fluorigenic DNA-PAINT with left-handed DNA allows for low background, fast 3D DNA-PAINT! Congrats, Bas! skeetorial: 1/x
pubs.acs.org/doi/full/10....
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Accelerated Left-Handed DNA-PAINT Using Fluorogenic Probes
Single-molecule localization microscopy (SMLM) techniques offer nanometer-scale resolution by stochastically localizing individual fluorescent molecules. Among these, DNA-mediated point accumulation f...
https://pubs.acs.org/doi/full/10.1021/acs.nanolett.5c05973
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Aaron and the Hoskins Lab at UW Madison
Stirling Churchman
about 1 month ago
1/ Preprint alert đ¨đ¨đ¨ How do cells decide where an mRNA should end? And how is that decision coordinated with splicing and transcription while the RNA is still being made? Here's what first author
@hopem105.bsky.social
found đ
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Cool! From Steve Bell's lab at MIT
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about 1 month ago
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reposted by
Aaron and the Hoskins Lab at UW Madison
PROFS
about 1 month ago
UW-Madison generated a $13.2 billion economic impact on the state over the last fiscal year. Another $12.4 billion was generated by spinoff companies rooted in UW-Madison research. Vice Chancellor Craig Thompson: "The economic impact...is substantial no matter where you live in the state."
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UW-Madison says it generated billions for state's economy last year
A new analysis released by UW-Madison says the university contributed billions in statewide economic impact last fiscal year.
https://www.wpr.org/news/uw-madison-report-billions-state-economy
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