After a long journey, our nf-test paper is officially out! 🚀 doi.org/10.1093/giga...

This is how I integrate Quarto and Zotero with minimal suffering (long rambling post, scroll down to the section on bibliography or search for Zotero): cameronpatrick.com/post/2023/07...

Another Bactopia update! I think the plugin is completed now! I've also started the transition from pytest to nf-test (from @lukfor.bsky.social and @sebschoenherr.bsky.social). So far nf-test has been great to work with! Haha probably should have made the transition a long time ago!

Here you go! #ciddle #südtirol jrkager.github.io

As a post-GWAS analysis, ever thought about automatic haplotype testing @ each locus + test vs any number of traits? 👏 Amazing @dariushghasemi.bsky.social just released #Haplomics, a #Snakemake pipeline walking u all the way down to summary stats+clustering www.medrxiv.org/content/10.1... #statgen

Really cool that the latest VSCode extension for Nextflow shows nf-test test coverage! 🚀

𝐇𝐮𝐦𝐚𝐧𝐠𝐞𝐧𝐨𝐦 𝐀𝐮𝐬𝐭𝐫𝐢𝐚 ist jetzt auf Bluesky! Das österreichische Humangenomprojekt ist eine Initiative für 𝐝𝐢𝐞 𝐈𝐧𝐭𝐞𝐠𝐫𝐚𝐭𝐢𝐨𝐧 𝐠𝐞𝐧𝐞𝐭𝐢𝐬𝐜𝐡𝐞𝐫 𝐮𝐧𝐝 𝐠𝐞𝐧𝐨𝐦𝐢𝐬𝐜𝐡𝐞𝐫 𝐃𝐚𝐭𝐞𝐧 𝐢𝐧 𝐌𝐞𝐝𝐢𝐳𝐢𝐧 𝐮𝐧𝐝 𝐖𝐢𝐬𝐬𝐞𝐧𝐬𝐜𝐡𝐚𝐟𝐭 in ganz Österreich. Infos ➡️ www.humangenom.at #Genetik #Genetics #Health #Genomics #GenomeOfEurope

What a fantastic talk given by Prof. Michael Moor. Thanks to the Faculty of AI and Scientific Computing in Medicine for organizing such an important event. @i-med.ac.at @sebschoenherr.bsky.social @lukfor.bsky.social #MedSky

“Infinite code = infinite maintenance” leaddev.com/software-qua...

🎙️ #Atherotalk Episode 7 is live, don’t miss it! I had the chance to interview my mentor, Prof. Kronenberg. @i-med.ac.at @aspcardio.bsky.social @katioorni.bsky.social #MedSky #CardioSky #Lpa #FH #Podcast 🎧Spotify: open.spotify.com/episode/26Me...

Just found my first real game on some old floppy discs from around 1999: a Mastermind clone written in QBasic. I remember being super happy and proud because it was the first project I actually finished instead of stopping halfway to start another idea. 👨🏻‍💻

I'd like to share DSO, a command line helper to build reproducible data science projects with ease. It is an opinionated way to organize data science projects, built around data version control (DVC). github.com/Boehringer-I...

We had an amazing time at the 2-day Hackathon at @i-med.ac.at ! Can't wait for the next one! 🚀

Our Nextflow in Genomics workshop kicks off tomorrow! Excited to dive into imputation with @sebschoenherr.bsky.social and @lukfor.bsky.social #nf-genomics #freeimputation

Looking forward to great discussions, learning, and sharing insights. Busy but productive days ahead!

I learned the hard way today: SimpleDateFormat in Java is NOT thread-safe! #java

Yes, but can it run Doom? `nextflow run doom` ✅ @nextflow.io (by @jordeu.bsky.social 🌟) github.com/nextflow-io/...

Für die #Geoguessr Spieler unter uns: eine Map mit ca. 9.900 locations aus #Südtirol. Viel Spaß! 📍 www.geoguessr.com/maps/678e0b0...

Looking forward to spending two days working on the imputation server with fantastic people! Thanks to @seqera.io, @ewels.bsky.social and @chrishakk.bsky.social for sending us stickers 🙏

For anyone who hasn’t already read the article, this is a pretty great video from Prime on it. curiouscoding.nl/posts/static...

👏

2024 is ending soon and it has been an exciting year for nf-test 🎉 A lot of new features and the amazing @nextflow.io community made nf-test even better 🚀 Thank you! 🙏 💡 What was your favorite nf-test update this year? #Nextflow #Bioinformatics #recap Here's a quick look back at 2024 🧵👇

Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social

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If you're looking to connect with other researchers and physicians in the cardiovascular field, join this Starter Pack. #CardioSky #MedSky #GeneSky #ImmunoSky go.bsky.app/VEqq8ML

Don't forget to open the door number 5 of the Nextflow Advent Calendar! 😍

Christmas time is upon us 🎄🎅! What better way to count down the days till Christmas eve than with an Advent calender? I am one day late, but here is little Nextflow advent calender I made for everyone. Check back every day at midnight EST to open a new door: flowuenne.github.io/nextflow_adv...

"Nextflow and nf-test encourage developers to use proper testing practices which are fundamental skills any developer needs." 👏 🚀

I'm a huge fan of the Eisvogel template for Pandoc! I've just updated my quarto-eisvogel extension to Eisvogel 2.5.0 and it works now with @quarto.org 1.6 🎉 Install lukfor/quarto-eisvogel, set the format to eisvogel-pdf and enjoy beautiful PDFs! 🙌 #rstats #quarto 👉 github.com/lukfor/quarto-eisvogel

I'm a huge fan of the Eisvogel template for Pandoc! I've just updated my quarto-eisvogel extension to Eisvogel 2.5.0 and it works now with @quarto.org 1.6 🎉 Install lukfor/quarto-eisvogel, set the format to eisvogel-pdf and enjoy beautiful PDFs! 🙌 #rstats #quarto 👉 github.com/lukfor/quarto-eisvogel

I had zero luck with grants. People really didn’t get why what I did was important and never figured out how to explain it to them.

🎙️Check out the latest podcast where @ewels.bsky.social discusses highlights from the @nextflow.io Summit with the team at @seqera.io! 👉 Listen now: hubs.la/Q02ZN8l20

📢We have a new Post-doc position in #bioinformatics & #biostats • Link: eurac.onboard.org/jobs/RGbRKOG2 • Deadline: 15.12.2024 The fellow will work on bioinformatic methods for cancer & other complex traits. Looking for experts on RNA-seq, ChIP-seq, ATAC-seq and WES analyses

🌍 The imputation servers running on our software stack: 🛰️ Our Main Instance: imputationserver.sph.umich.edu 🛰️ TOPMed: imputation.biodatacatalyst.nhlbi.nih.gov 🛰️ MUC: imputationserver.helmholtz-munich.de 💡 Are there other imputation servers flying around?

Trying something new: A 🧵 on a topic I find many students struggle with: "why do their 📊 look more professional than my 📊?" It's *lots* of tiny decisions that aren't the defaults in many libraries, so let's break down 1 simple graph by @jburnmurdoch.bsky.social 🔗 www.ft.com/content/73a1...

I just updated the starter pack and added the bridge account @uniinnsbruck.social.uibk.ac.at.ap.brid.gy

Nextflow is the leading workflow system in life sciences, but transforming pipelines into secure web services remains complex. Our latest preprint introduces a framework that simplifies this process to improve accessibility and collaboration. www.biorxiv.org/content/10.1... Here's how it works: 🧵👇

A great starter pack for the mtDNA community!

Totally agree!

Fantastic work highlighting the critical role of proper development practices in Bioinformatics! 🎉 Also, a big thanks for featuring nf-test in the testing section. 👉 ferenckata.github.io/ImprovingSof... And here the preprint of nf-test: www.biorxiv.org/content/10.1...

I created also a list that lets you pin it to your home screen without needing to follow each account individually. bsky.app/profile/lukf...

I just created a starter pack to collect accounts related to science in Innsbruck 🏔️ Feel free to contact me if I should put someone on the list go.bsky.app/PTnZKvx cc: @sigridneuhauser.bsky.social @francescafinotello.bsky.social

I learned some stuff about Bluesky I did not know by reading this. Maybe worth passing it on to others so we can all start getting the full benefit of the 🦋.

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wow! nf-test has hit 100,000 downloads! 🎉🚀 A huge thank you to the @nextflow.io and @nf-co.re community! 🌟🙏

who knew it would be easier to get everyone to switch social media platforms than getting them to use hg38

Another great starter pack for the AI-for-science bubble! 🙌

An extension to Tabix for rapid lookup of loci based on their summary statistics 🔍

🚀 Two weeks ago, we released nf-test 0.9.2, including fixes for sharding and smart testing. Upgrade now to streamline your workflows and optimize your GitHub Actions! 🔧✨ @nextflow.io @nf-co.re 👉 www.nf-test.com/tutorials/gi...