Join us for two days of fun in Barcelona, hacking away at nf-core projects!

Check out the blog post by Nextflow Ambassador Zohaib Anwar on VIRUS-MVP: a flexible and scalable workflow for genomic surveillance of priority viruses including SARS-CoV-2, Mpox, RSV, and influenza! 🦠 👉 Read now: hubs.la/Q03lM5KG0 #NextflowAmbassador @nf-co.re

Check out this fantastic work on neighbourhood preference in spatial omics data from the Schapiro lab 🚀! Congratulations @chiaraschiller.bsky.social and team on a wonderful project! 👏🤩

You should definitely check out this amazing Nextflow podcast episode with my friend and collaborator @kbestak.bsky.social discussing microscopy and spatial omics workflows in nf-core and Nextflow! 🤩🔬🧪

My latest #Nextflow pipeline has just been published in JOSS 🎉

Running Nextflow pipelines on AWS ☁️? Check out the blogpost I wrote about using resource Labels with Nextflow and Seqera to get detailed pipeline run costs 💵.

If you want to start learning #Nextflow or brush up on your basics of #Nextflow, now is the perfect time 🕑! New training materials and support from ambassadors and experienced community members during training week help guide you through it, at your own pace! community.seqera.io/t/nextflow-t...

Come and talk about your amazing projects at the #Nextflow summit in Boston 🎤! I am very sad to miss this summit this year, but it will be a fantastic event, so make sure you to submit your abstract before the deadline 🤩!

Great opportunity to get together with your colleagues and friends and watch the training videos to learn Nextflow together 👥. 💬 Discussing things not clear to you and sending questions to the community forum are all great ways to accelerate your learning experience and increase the fun 🚀 🤩!

Interesting to see doom and gloom as separate ends of a governance axis!

New blog post: Exploring the bioRxiv API with R, httr2, rvest, tidytext, and Datawrapper doi.org/10.59350/wzt... #Rstats

Introducing @gestaltsp.bsky.social We’re growing with already >1000 members. Come be part of spatial omics revolution!!! @ioavlachos.bsky.social @lgmartelotto.bsky.social @naturegenet.bsky.social rdcu.be/d8qHT #spatial #omics #technology #computation #tissue #singlecell

Don't miss this chance to listen to my amazing colleagues Esha and Rob talk about how you can utilize Seqera Platform to help streamline your scientific data analysis! 🤩

📣 We are hiring! Join Yoshiji Lab at McGill University Dept of Human Genetics in Montreal, Canada! yoshiji-lab.org/joinus ✅Fully Funded Positions • 2 MSc Students • 1 PhD Student • 1 Postdoc ✅Goal: Using human genetics and multi-omics for drug target discovery and precision medicine

I think I found the talk. Thanks for the recommendation and for sharing your experience! 🙏 youtu.be/2DbuqYKOsrY?...

You can now use Seqera AI with MultiQC! 🤖 Get insights from your reports and chat about potential QC issues with Seqera AI, directly from inside your MultiQC reports! Fantastic new update by everyone involved at @seqera.io !

Protein backbone diffusion models consistently undersample catalytically important motifs, and oversample idealized helices, raising questions about the appropriateness of these methods in designing starting points for enzyme design & evolution. From www.biorxiv.org/content/10.1...

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities

Extra! Extra! If you're into cardiovascular development and regeneration, and you want to hobnob with all them awesome scientists, then follow @weinsteinconf.bsky.social and submit an abstract for the 2025 Weinstein Conference in Milwaukee!! #favorite #conference #ever

Interesting concept. jetty::run() executes R code in a Docker container and passes the results back into the local environment https://cran.r-project.org/web/packages/jetty/index.html (source: https://github.com/dmolitor/jetty)

I am organizing a local site in Montreal for this @nf-co.re hackathon 🇨🇦. Anyone in the area who is interested to help organize or join this hackathon and a potential #Nextflow training before, please DM me 😊!

Do you want some AI guided help to write #Nextflow pipelines or convert your old legacy pipelines to #Nextflow? Go to seqera.io and try out Seqera AI now 🤩!

Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing #JASMS pubs.acs.org/doi/10.1021/...

For anyone that loves poker and card games, Balatro is such a great game! Just started playing it again on my tablet via Apple Arcade and having a blast 🎮🃏! apps.apple.com/ca/app/balat...

Now that advent time and Christmas is over, I wanted to share the hidden easter eggs 🥚 in my #Nextflow advent calendar, for everyone that missed them. Head to flowuenne.github.io/nextflow_adv... to discover them yourself or find all cheat codes in this 🧵...

Today is the last day of my #Nextflow advent calender. It was fun doing this during December and I hope people discovered things they didn't know yet about the NF ecosystem ☺️! flowuenne.github.io/nextflow_adv... Merry Christmas and a Happy New Year to everyone 🎄❄️☃️🎁🎆

I hope we get many people together across Quebec (Canada) for a local site for this hackathon. If you are interested to join our local site in person, please contact me so we can plan ahead ☺️! Excited to hack some Nextflow with many of you 👍💻

An opportunity to work at an amazing place with amazing people! 🦠 “GeneLab is seeking a #Bioinformatics #ProgramDeveloper to drive research with #omics data from space biology experiments. Develop workflows and analyze data critical to human space exploration. 🔗 Apply now: tinyurl.com/8psb8uwn “

Are you looking for job opportunities where your Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities

This map of Github is really cool: anvaka.github.io/map-of-githu... I feel right at home in Genomic Haven next to RWorld. Hope to visit some of these lands next year. Vuetopia and Vuestian look like cool places 😎.

Today is a special Nextflow advent calender entry, as you will need to have discovered the first hidden secret to solve this one. 🎅Santa needs help with his gift delivery Nextflow pipeline? Can you help him ☺️🦌🎁?! Open door 15 on: flowuenne.github.io/nextflow_adv...

Today's content in my Nextflow advent calender door 14 is for anyone interested in bacterial genomes 🧬 👀 @rpetit3.bsky.social flowuenne.github.io/nextflow_adv...

Protenix, another third wave AF3-like model goes Apache license github.com/bytedance/Pr...

It's exciting to see so much activity and enthusiasm in the protein folding and design space. So many new tools available (Chai-1, Boltz-1, Protenix), can't wait to see many of them used in Nextflow pipelines like nf-core/proteinfold soon (github.com/nf-core/prot...) 🤩!

Mind blowing science with 10x @10xgenomics.bsky.social #ESSB2024

The Gregor Andelfinger and Alexandre Dubrac labs in Montreal are looking for a research assistant to investigate Multisystemic smooth muscle dysfunction syndrome. (1/3)

Over the weekend some busy elves have hidden a secret in my personal #Nextflow Advent calender 📆. Would love to hear from people whether they can find it (but don't spoil the discovery for everyone else 😉). flowuenne.github.io/nextflow_adv... Tip: Best to discover and enjoy on 💻 versus 📱

Today's advent calender door has something for all of you that love open source software, that was recently announced at Nextflow Summit Barcelona 👀 Open the door here 🚪: flowuenne.github.io/nextflow_adv...

We are looking for a Postdoc with a strong computational background to join our team. Want to work on the development and application of computational methods in the field of translational spatial biology? Apply now! karriere.klinikum.uni-heidelberg.de/index.php?ac...

Anyone that tried to open door 4 of the Nextflow advent calender today but found it closed, just pushed a fix to reset cache so it should not happen again 😅☺️ flowuenne.github.io/nextflow_adv... Today's door has something for you, if you want to learn #Nextflow!

If you are interested in spatial omics, bioinformatics, want to live in a beautiful city in Germany and work with an awesome team, you should absolutely apply for this opportunity! ☺️🚀🤩

Just added some cozy christmas background music made by suno.com to the page to round up the AI development cycle 😄.

Christmas time is upon us 🎄🎅! What better way to count down the days till Christmas eve than with an Advent calender? I am one day late, but here is little Nextflow advent calender I made for everyone. Check back every day at midnight EST to open a new door: flowuenne.github.io/nextflow_adv...

AlphaFold is gonna revolutionize biotech. blog.google/technology/a...

Naive question from someone outside the protein design field: Many protein folding methods such as #alphafold use multiple sequence alignments (MSA) to model co-evolution of amino acids. But isn't using MSAs to known sequences biasing us to folding structures that we have observed before?

Watch the podcast on YouTube or Spotify now, or check out the webpage for links, details, a written summary and the full transcript! hubs.la/Q02ZN8l20

One of the really cool things about Nextflow is that it can run your pipelines everywhere with only changing the configuration🔧. Build it on your laptop, run it on slurm, aws, gcp, or any other infrastructure 🤩! As a recent SLURM to cloud convert, I really appreciate this flexibility 👍!

I was an anti Apple products person for a long time (also mostly owed to being a student without much money for most of my adult life). But damn is it smooth when you copy something on your Mac and paste it on your phone (or vice versa)... ⚡️

Behind the graduate mental health crisis in science https://www.nature.com/articles/s41587-024-02457-z (read free: https://rdcu.be/d1EB9)