🚨📢📄 Article in press in Genome Biology doi.org/10.1186/s130... We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇

Merci aux organisateurs du STBDE de @upecofficiel.bsky.social de nous avoir convié à cet événement festif et convivial !

Please join us at our SMBE 2026 symposium 🌿🧬! Young researchers are more than welcome! Invited speakers: -Chloee McLaughlin (HudsonAlpha Institute of technology) -Frank Johannes (Technical University of Munich) @nyuad-oaa.bsky.social @cnrs.fr @official-smbe.bsky.social @murielgrosb.bsky.social

🚨 New offer in our lab: 🐝🧬22-month postdoc or engineer position to estimate the effectiveness of the genetic queen fertilisation control in honey bees through large-scale sequencing and genomic analysis Location: Toulouse, France 😍 More information: thibaultleroyfr.github.io/pdf/Annonce_... Reposts🙏

Root tip excision-induced exodermis lignification impacts lateral root emergence in Brachypodium distachyon Bellande et al. @joopvermeer.bsky.social @tbadet.bsky.social @anneroulin.bsky.social @rootcap.bsky.social nph.onlinelibrary.wiley.com/doi/10.1111/...

Have we been overstating the role of transposable elements in adaptation to local or rapidly changing environmental conditions? Happy to share my (somewhat unpopular?) opinion paper on this matter: www.sciencedirect.com/science/arti... Thanks to those who already shared the link!

A nice opinion paper (doi.org/10.1016/j.pb... ) from @anneroulin.bsky.social that highlights the need for caution when generalizing about the importance of TEs in local plant adaptation. #TEsky #transposon

Y aura-t-il de la neige à Noël ? ❄️ Au fond des océans, oui ! La « neige marine » est un phénomène méconnu qui permet à l’océan d’emprisonner dans ses profondeurs le carbone issu du CO2 atmosphérique et de participer ainsi à la régulation du climat. www.cnrs.fr/fr/actualite/po...

🎙️ Nouvel épisode de Têtes Chercheuses qui nous plonge en immersion dans les recherches prometteuses en #épigénétique de Deborah Bourc'his, directrice de recherche Inserm et cheffe d’équipe à l’Institut Curie. ▶️ curie.fr/actualite/po...

Fil RH #CNRS de la semaine #VeilleESR Dans la continuité du sujet précédent et comme nous sommes dans une période de prise de fonction, voici un fil sur les concours externes CNRS des ingénieurs et techniciens. Comment les concours externes IT évoluent au CNRS ? 1/12

Fil RH #CNRS de la semaine #VeilleESR Ayé, les concours chercheurs CNRS sont ouverts ! C’est le moment idéal pour prendre la vague, toute honte bue, et publier quelques données pluriannuelles sur ces recrutements 1/9 carrieres.cnrs.fr/concours-ext...

Please join us at our SMBE 2026 symposium 🌿🧬! Young researchers are more than welcome! Invited speakers: -Chloee McLaughlin (HudsonAlpha Institute of technology) -Frank Johannes (Technical University of Munich) @nyuad-oaa.bsky.social @cnrs.fr @official-smbe.bsky.social @murielgrosb.bsky.social

Such a #PLEASURE to be involved in this collaboration ! All the #transposon annotated during the project can be visualized in #RepetDB the TE database. #TEsky

WOW! Very promising new tool to facilitate collaborative manual curation of TEs link.springer.com/article/10.1...

A. thaliana has been pivotal in advancing our understanding of the bases of adaptation to past and ongoing environmental changes! A very nice review by @ahancock.bsky.social, Swan Portlier, Andrea Fulgione, @mgstetter.bsky.social and @meauxjuliette.bsky.social www.annualreviews.org/docserver/fu...

As usual, I had a wonderful time at #MobilET ! It was such a pleasure to see everyone again!

Internship position open at INRAE-URGI for 2026, more details available here www.sfbi.fr/emplois/offr...

🚨 📢 PhD offer in a nice place with nice people.

JOIN US WEDNESDAY, Aug. 20, 2025, @eseb2025.bsky.social ! 🚪 Room 120–121 🕑 2:00–5:40 PM 🔥 Satellite Symposium 🔥 “Ecological Genomics of Coevolution” Keynote speakers: ⭐ Ellen Leffer ⭐Joy Bergekson @bergelsonlab.bsky.social 💡 Young Researcher Talks on host–pathogen dynamics, symbiosis, adaptation!

Venez découvrir #REPET, un outil de détection, de classification et d'annotation d'éléments transposables en live avec Etienne Bardet en amphi E @jobim2025.bsky.social @urgi-inrae.bsky.social #JOBIM2025 #URGI #INRAE

Venez me voir au poster 2, pour découvrir l'URGI, une plateforme bio-informatique @urgi-inrae.bsky.social @jobim2025.bsky.social #JOBIM2025 #URGI #INRAE

Vous êtes à #JOBIM2025 et vous avez manquez le poster de @marienewan.bsky.social sur la nouvelle version de #REPET ? Rassurez vous une demo est organisé aujourd'hui à midi en amphi E. Vous découvrirez toutes les évolutions mises en place pour vous faciliter l'annotation des #transposons

Notre plateforme de Jouy recrute pour contribuer au développement de Siduri, l'entrepôt de données de Ferments du Futur !

Trainings of the “Cycle bioinformatique par la pratique” 2025 Tidyverse : documents.migale.inrae.fr/posts/traini... Python : documents.migale.inrae.fr/posts/traini...

Today we released Dfam 3.9 with many new community submissions and the result of a thorough curation and update of the Drosophila Melanogaster library. www.dfam.org (release notes: www.dfam.org/releases/Dfa...)

GrAnnoT, a tool for effecient and reliable annotation transfer through pangenome graph https://www.biorxiv.org/content/10.1101/2025.02.26.640337v1

A great opportunity in a nice place 👇

Besoin de vous former à #Python ? Notre cycle de formation "Bioinformatique par la pratique" propose ce module introductif à Jouy-en-Josas sur 2 jours (31 mars, 1er avril). 📝 Inscriptions et programme sur documents.migale.inrae.fr/trainings.html

A couple of months ago I tried the @peercommunityin.bsky.social publishing system & I can only recommend it (pun intended). Please see below to change how we publish science 1/n

Dive into the massive genomes of plant pathogenic rust fungi! 🌿🍄 Our study reveals how ancestral & recent bursts of transposition have shaped these remarkable genomes. 👏 Congrats to @Emma______C on her 1st PhD paper! 🙌 @SebbyRust, Emmanuelle Morin www.biorxiv.org/content/10.1...

The great @johannconfais.bsky.social on a reference-free approach (panREPET) to annotate #Transposons in #pangenomes 🧬

Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach

REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32 forgemia.inra.fr/urgi-anagen/...

Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes #PAG32 github.com/cgroza/Graff...

@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element

#PAG32 I'd bet that every genome studied at PAG has a least 1 #Transposon, if not thousands! Find us on Sunday for an exciting session on #mobileDNA!

Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools

Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32 urgi.versailles.inra.fr/repetdb/begi...

We are opening a call for applications 2025 – Creation of new junior research groups at the Institut Pasteur in Paris @pasteur.fr all details on our web site : research.pasteur.fr/en/call/call...

Scraping who is on the platform working on #TransposableElements or other types of #RepetitiveDNA Have fun! go.bsky.app/7t5GQAP

Et c est reparti, 2e journée de l atelier pangénomique @inrae-france.bsky.social à Versailles du SaPI PanAnnot #CATI_GREP #CATI_BARIC @johannconfais.bsky.social On discute des outils de pangénomique et de leur impact sur nos thématiques de travail.

We are happy to announce that the recording of the last #TEhub workshop on #benchmark at #ICTE2024 is available on our YouTube channel! youtube.com/watch?v=3qY0... Please share widely! #Transposons #TEsky

#TEhub workshop on #benchmark starts with a full room listening to the wisdom of @hquesneville and Arian Smit on the considerations, pitfalls and ways to assess #Transposons annotation. Soon on our YouTube channel! #TEsky

📢 #hiringalert #JobOpening #Concours Rejoignez-nous en tant qu'ingénieur développeur de pipeline d'analyse et #DevOps @INRAE_URGI sur Versailles ou Toulouse. Plus d'info sur urgi.versailles.inrae.fr/About-us/News/… @inrae-france.bsky.social

Only one more week to register and submit an abstract to #ICTE2024 (February 15th). There will be no extensions! The abstract submission process can be so 😱 please take your time to go through all the cases to fill. There are 22 slots for speakers. Be on time, and come showcase your research!