bioRxiv Bioinfo
@biorxiv-bioinfo.bsky.social
๐ค 4768
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๐ 9891
MapMyCells: High-performance mapping of unlabeled cell-by-gene data to reference brain taxonomies
https://www.biorxiv.org/content/10.64898/2026.03.06.710160v1
about 4 hours ago
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singIST: an R/Bioconductor library and Quarto dashboard for automated single-cell comparative transcriptomics analysis ofdisease models and humans
https://www.biorxiv.org/content/10.64898/2026.03.03.709270v1
about 11 hours ago
0
1
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Inverse Protocol Prediction from Spheroid Microscopy Imaging via Morphology-Aware Structured Learning
https://www.biorxiv.org/content/10.64898/2026.03.04.709682v1
about 15 hours ago
0
0
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Re-analysis of Transcriptomic and Proteomic Data Using Multi-Omics Approaches Identifies Biomarkers of Diabetes-Associated Complications in an INS Mutant Pig Model
https://www.biorxiv.org/content/10.64898/2026.03.04.707880v1
about 15 hours ago
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1
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Calibration improves estimation of linkage disequilibrium on low sample sizes
https://www.biorxiv.org/content/10.64898/2026.03.05.709321v1
about 15 hours ago
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0
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Deep-Palm๏ผan integrated deep learning framework for structure-aware prediction of protein S-Palmitoylation
https://www.biorxiv.org/content/10.64898/2026.03.05.709753v1
about 15 hours ago
0
1
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PROTOTYPE-BASED CONTINUAL LEARNING FOR SINGLE-CELL ANNOTATION
https://www.biorxiv.org/content/10.64898/2026.03.05.709973v1
about 15 hours ago
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Deciphering Cell Cycle Dynamics and Cell States in Single-cell RNA-seq data with SPAE
https://www.biorxiv.org/content/10.64898/2026.03.05.709782v1
about 15 hours ago
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MS-BCR-DB: an integrated BCR repertoire database to mine humoral multiple sclerosis signatures
https://www.biorxiv.org/content/10.64898/2026.03.05.709606v1
about 15 hours ago
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0
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Relationship Between Gene Expression and Drug Response in Triple-Negative Breast Cancer: Leveraging Single-Cell RNA Sequencing and Machine Learning to Identify Biomarker Profiles
https://www.biorxiv.org/content/10.64898/2026.03.05.709737v1
about 15 hours ago
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1
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HP2NET: Empowering Efficient Phylogenetic Network Analysis through High-Performance Computing
https://www.biorxiv.org/content/10.64898/2026.03.05.709005v1
about 15 hours ago
0
0
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Perseus: Lineage-Aware Refinement of Kraken2 Taxonomic Classification for Long Read Metagenomes
https://www.biorxiv.org/content/10.64898/2026.03.06.710148v1
about 16 hours ago
0
4
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REMAG: recovery of eukaryotic genomes from metagenomic data using contrastive learning
https://www.biorxiv.org/content/10.64898/2026.03.05.709928v1
about 16 hours ago
0
1
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geneSTRUCTURE: A Modern Platform for Visualization of Gene Structures
https://www.biorxiv.org/content/10.64898/2026.03.05.709980v1
about 16 hours ago
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2
1
Identifying genes associated with phenotypes using machine and deep learning
https://www.biorxiv.org/content/10.64898/2026.03.05.709665v1
1 day ago
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5
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FourC: identifying significant and differential contacts in 1D chromatin conformation data
https://www.biorxiv.org/content/10.64898/2026.03.05.709811v1
1 day ago
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2
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Multi-Target In Silico Investigation of Withaferin A as a Potential Antiviral Inhibitor Against Key Marburg Virus Proteins
https://www.biorxiv.org/content/10.64898/2026.03.06.710011v1
1 day ago
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SR2P: an efficient stacking method to predict protein abundance from gene expression in spatial transcriptomics data
https://www.biorxiv.org/content/10.64898/2026.03.04.709692v1
1 day ago
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Telomere-to-telomere assembly and haplotype analysis of tetraploid Dendrobium officinale illuminate Orchidaceae polyploid evolution and mycorrhizal symbiosis genes
https://www.biorxiv.org/content/10.64898/2026.03.04.709700v1
1 day ago
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1
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Application of large language models to the annotation of cell lines and mouse strains in genomics data
https://www.biorxiv.org/content/10.64898/2026.03.05.709906v1
1 day ago
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1
0
Diffusion-ACP39: A Decoder-Adaptive Latent Diffusion Framework for Generative Anticancer Peptide Discovery
https://www.biorxiv.org/content/10.64898/2026.03.04.709539v1
3 days ago
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0
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EasyPseudogene: an easy-to-use and multithreaded pipeline for pseudogene detection
https://www.biorxiv.org/content/10.64898/2026.03.04.709571v1
3 days ago
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2
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Comprehensive Transcriptomic Analysis of Atopic Dermatitis Patients Documents the Spectrum of Molecular Abnormalities and the Response to Treatment
https://www.biorxiv.org/content/10.64898/2026.03.04.709610v1
3 days ago
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Phenotypic reversion and target prioritization for cellular inflammation via representation learning with foundation models
https://www.biorxiv.org/content/10.64898/2026.03.04.709607v1
3 days ago
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0
0
Using Variable Window Sizes for Phylogenomic Analyses of Whole Genome Alignments
https://www.biorxiv.org/content/10.64898/2026.03.04.709403v1
3 days ago
0
3
1
Circular RNA identification using a genomic language model and a small number of authenticated examples
https://www.biorxiv.org/content/10.64898/2026.03.04.709677v1
3 days ago
0
1
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Minimal Amino Acid Alphabet for Protein Design
https://www.biorxiv.org/content/10.64898/2026.03.06.710107v1
3 days ago
0
2
1
GWAS Summary Statistic Tool: A Meta-Analysis and Parsing Tool for Polygenic Risk Score Calculation
https://www.biorxiv.org/content/10.64898/2026.03.04.709666v1
3 days ago
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0
0
ProtNHF: Neural Hamiltonian Flows for Controllable Protein Sequence Generation
https://www.biorxiv.org/content/10.64898/2026.03.04.709305v1
3 days ago
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0
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From variability to consensus: rescoring harmonizes peptide identification across diverse search engines and datasets
https://www.biorxiv.org/content/10.64898/2026.03.04.709532v1
3 days ago
0
0
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Single-Cell Genomics Decontamination with CellSweep
https://www.biorxiv.org/content/10.64898/2026.03.04.709349v1
3 days ago
0
2
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Unveiling Common Molecular Signatures and Pathways in Psychiatric Disorders and Alcohol Use Disorder through Integrated Transcriptome Analysis
https://www.biorxiv.org/content/10.64898/2026.03.04.709553v1
3 days ago
0
1
0
ESGI: Efficient splitting of generic indices in single-cellsequencing data
https://www.biorxiv.org/content/10.64898/2026.03.04.709594v1
3 days ago
0
1
1
A latent space thermodynamic model of cell differentiation
https://www.biorxiv.org/content/10.64898/2026.03.04.709512v1
3 days ago
0
0
1
RNA-seq analysis in seconds using GPUs
https://www.biorxiv.org/content/10.64898/2026.03.04.709526v1
3 days ago
0
7
4
Reliable prediction of short linear motifs in the human proteome
https://www.biorxiv.org/content/10.64898/2026.03.04.709504v1
3 days ago
0
1
0
In silico drug repurposing and in vitro validation of cestode fatty acid binding proteins
https://www.biorxiv.org/content/10.64898/2026.03.04.709508v1
3 days ago
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0
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What Do Biological Foundation Models Compute? Sparse Autoencoders from Feature Recovery to Mechanistic Interpretability
https://www.biorxiv.org/content/10.64898/2026.03.04.709491v1
3 days ago
0
2
0
From expansion to consolidation: two decades ofGene Ontology evolution
https://www.biorxiv.org/content/10.64898/2026.03.04.709507v1
3 days ago
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0
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TFBSpedia: a comprehensive human and mouse transcription factor binding sites database
https://www.biorxiv.org/content/10.64898/2026.03.04.709638v1
3 days ago
0
3
0
bMAE: Masked Autoencoder Latent Representations for Bulk RNA-seq Tissues
https://www.biorxiv.org/content/10.64898/2026.03.03.709470v1
4 days ago
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0
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Early Identification of At-Risk Patients: ProteomicSignature Predicts Progression to DecompensatedCirrhosis
https://www.biorxiv.org/content/10.64898/2026.03.04.709475v1
4 days ago
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0
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An Energy Landscape Approach to Miniaturizing Enzymes using Protein Language Model Embeddings
https://www.biorxiv.org/content/10.64898/2026.03.04.709378v1
4 days ago
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0
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Confidence Without Verification: Screening pLDDT Unreliability in AlphaFold2 Fold-Switching Predictions
https://www.biorxiv.org/content/10.64898/2026.02.19.706878v1
4 days ago
0
3
2
A Quantum Lens on Molecular Design: A Machine-Learned Energy Function from Interacting Quantum Atoms.
https://www.biorxiv.org/content/10.64898/2026.03.03.709242v1
4 days ago
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0
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waveome: a toolkit for longitudinal omics analysis using Gaussian processes
https://www.biorxiv.org/content/10.64898/2026.03.03.709362v1
4 days ago
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0
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Gradient boosting regression and convolution improve deconvolution of bulk transcriptomes
https://www.biorxiv.org/content/10.64898/2026.03.03.709368v1
4 days ago
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0
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Predicting how perturbations reshape cellular trajectories with PerturbGen
https://www.biorxiv.org/content/10.64898/2026.03.04.709254v1
4 days ago
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1
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Genome-wide classification of tumor-derived reads from bulk long-read sequencing
https://www.biorxiv.org/content/10.64898/2026.03.03.709085v1
4 days ago
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0
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FoldARE, an RNA secondary structure analysis and prediction tool via generative pseudo-SHAPE modeling
https://www.biorxiv.org/content/10.64898/2026.03.04.709501v1
4 days ago
0
1
0
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