Lingchen He 何灵尘
@lingchenhe.bsky.social
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Someone‖‖Phd student‖MGEs‖HGT‖Phage person but sometimes anti-phage
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Lingchen He 何灵尘
Paul Hoskisson 🧫 🦠🐸
2 days ago
Come and work with me and
@ariannebabina.bsky.social
on
#Streptomyces
evolution and antibiotic production Origins of a tangled bank: Adaptation and evolution in antibiotic-producing Streptomyces
www.gla.ac.uk/postgraduate...
please repost
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University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Underpinning Bioscience - Paul A Hoskisson
https://www.gla.ac.uk/postgraduate/doctoraltraining/northwestbio/projects/bioscience/paulahoskisson/
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🔥🔥🔥
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6 days ago
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Congrats!!
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8 days ago
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Lingchen He 何灵尘
Sorek Lab
21 days ago
Phage "satellites" that produce capsids but have no genes to produce tails have puzzled scientists for a long time. These are abundant as prophages in bacteria, but it was unclear how they can infect without tails Now, Penadés & co show that they hijack tails from other phages. Incredible!
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We discovered a new horizontal gene transfer mechanism: tail-less cf-PICIs hijack free phage tails extracellularly, forming infectious chimeric virions that drive both intra- and inter-species transfer among bacteria.
@jonaszpatkowski.bsky.social
@tcostalab.bsky.social
@jrpenades.bsky.social
23 days ago
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Lingchen He 何灵尘
PHD Comics
about 2 months ago
Did you get the email I sent 😭
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Lingchen He 何灵尘
cc 🌷
2 months ago
Picking blueberries 💙🐦
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Lingchen He 何灵尘
Emmanuele Severi
2 months ago
#phagesky
www.cell.com/cell-host-mi...
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The prototypic crAssphage is a linear phage-plasmid
Schmidtke et al. demonstrate that C. communis, a ubiquitous human gut phage that evades conventional plaque-based isolation, predominately replicates as a low-copy linear phage-plasmid with a broad ho...
https://www.cell.com/cell-host-microbe/abstract/S1931-3128(25)00276-8
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Congratulations Franklin, Yi and all the authors!! Very beautiful work!
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2 months ago
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Lingchen He 何灵尘
Franklin Nobrega
4 months ago
Thank you to everyone who attended the 3rd UK MGE workshop. What an incredible few days of science and community building! Next stop: York 2026, hosted by
@pcmfogg.bsky.social
. See you all next year!
#UKMGE
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Lingchen He 何灵尘
Tung Le
5 months ago
1/ Excited to share our latest work on gene transfer agents (GTAs) in Caulobacter crescentus, led by Emma Banks in collaboration with Pavol Bardy and Mai Nguyen from York!!! See a brief thread below.
shorturl.at/o6S1w
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A bacterial CARD-NLR immune system controls the release of gene transfer agents
Bacteria have evolved a wide array of immune systems to detect and defend against external threats including mobile genetic elements (MGEs) such as bacteriophages, plasmids, and transposons. MGEs are ...
https://shorturl.at/o6S1w
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Lingchen He 何灵尘
Fernando Gonzalez-Candelas
5 months ago
Good papers, like good wine, need maturing. I'm proud and thrilled to share our work on genomic epidemiology of K.pneumoniae in Valencia and differential transmission patterns of resistances, part of Neris Garcia's PhD thesis and the NLSAR consortium.
go.uv.es/td8iL4c
#publichealth
#EpiSky
🧬🖥️
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Genomic surveillance reveals different transmission patterns between third-generation cephalosporin and carbapenem resistance in Klebsiella pneumoniae in the Comunidad Valenciana (Spain), 2018–2020 - ...
Background The emergence and spread of third-generation cephalosporins (3GC) and carbapenem-resistant Klebsiella pneumoniae pose a global critical challenge. Understanding the transmission dynamics wi...
https://go.uv.es/td8iL4c
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Lingchen He 何灵尘
Jose A Escudero
5 months ago
🧪 Finally out after peer review, our work showing that "Mobile
#Integrons
carry Phage Defense Systems" is now published in Science 🎉 Short 🧵
www.science.org/doi/10.1126/...
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Mobile integrons encode phage defense systems
Integrons are bacterial genetic elements that capture, stockpile, and modulate the expression of genes encoded in integron cassettes. Mobile integrons (MIs) are borne on plasmids, acting as a vehicle ...
https://www.science.org/doi/10.1126/science.ads0915
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Three to one, tales! (✓)
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5 months ago
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Lingchen He 何灵尘
Andreas Haag
5 months ago
Interested in fighting AMR? Come and join us at St Andrews. applications are open until 15th May to students worldwide!
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Lingchen He 何灵尘
Trevor Lithgow
5 months ago
"That telomere phages are so prevalent means that they are a selective force, one that we know little about. We now want to understand how the telomere-toxin is secreted and also understand how this ‘telocin’ wheedles its way into unsuspecting bacterial neighbors”
www.science.org/doi/10.1126/...
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Telomere bacteriophages are widespread and equip their bacterial hosts with potent interbacterial weapons
Klebsiella host strains infected with telomere phages can grow to be the dominant lineage in mixed populations.
https://www.science.org/doi/10.1126/sciadv.adt1627
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Lingchen He 何灵尘
Alex Crits-Christoph
5 months ago
Unique investigation of some errors in long read assemblers. In particular these remarkably chimeric contigs are 😱, if rare.... Improving long read assemblers is definitely the space to be in when it comes to the future of metagenomics, as short reads won't be part of it 😉
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Lingchen He 何灵尘
Eduardo Rocha
6 months ago
New paper
@isme-microbes.bsky.social
: Among a sample of 1044 vibrio phages, we found 17 new Schizotequatrovirus with large genomes (>250kb), a broad host range, and yet a low frequency in our samples (?!).
#MicroSky
#PhageSky
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Lingchen He 何灵尘
PLOS Biology
6 months ago
The BASEL collection of E. coli
#phages
is limited by its host strain.
@humollidorentina.bsky.social
@damienpiel.bsky.social
@aharms485.bsky.social
&co use a modified host to add 36 new phages, revealing roles of O-antigen in recognition & R-M systems in immunity
@plosbiology.org
🧪
plos.io/4jirGvX
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Congratulations Alex and the team!! Nice one!
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6 months ago
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Lingchen He 何灵尘
I2SysBio
6 months ago
We welcome on BlueSky Alfred Fillol Salom
@alfredfisa.bsky.social
, the leader of the The Ecology of Mobile Genetic Elements group at our research institute
#microsky
🧫🦠🧪
#phages
#virology
#viruses
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Why the ground is always breaking?
7 months ago
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Lingchen He 何灵尘
7 months ago
We would love feedback on a new NCBI-BLAST service we are launching today:
sky-blast.com
Under the hood it's the same BLAST executable and databases provided by NCBI, with a replica of the NIH's interface - providing an alternative to the US gov service that's less congested, faster & more reliable
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Lingchen He 何灵尘
Nature Reviews Microbiology
7 months ago
New online! Interactions and evolutionary relationships among bacterial mobile genetic elements
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Interactions and evolutionary relationships among bacterial mobile genetic elements
Nature Reviews Microbiology, Published online: 11 March 2025; doi:10.1038/s41579-025-01157-yIn this Review, Lang and colleagues present an overview of the current knowledge landscape regarding mobile genetic elements in bacteria, with a focus on their…
https://www.nature.com/articles/s41579-025-01157-y?utm_source=bluesky&utm_medium=social&utm_campaign=nrmicro
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Lingchen He 何灵尘
Teresa Thurston
7 months ago
New preprint on how a minimal Salmonella kinase needs a host kinase to activate it. Work led by
@timeshpillay.bsky.social
and another great collaboration with
@katrinrittinger.bsky.social
@crick.ac.uk
biorxiv.org/content/10.1...
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Salmonella effector kinase SteC is activated by host-mediated phosphorylation
The pathogen Salmonella , which causes significant human morbidity and mortality, encodes an effector kinase, SteC, which mediates actin polymerisation and cell migration. Given the minimal nature of ...
https://biorxiv.org/content/10.1101/2025.03.01.640964v1
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Lingchen He 何灵尘
François Rousset
7 months ago
More phage-encoded defense systems mediating interviral competition 😯
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A prophage-encoded anti-phage defense system that prevents phage DNA packaging by targeting the terminase complex
A unique feature of temperate phages is the ability to protect their host bacteria from a second phage infection. Such protection is granted at the lysogenic state, where the phages persist as prophag...
https://www.biorxiv.org/content/10.1101/2025.02.27.640495v1
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Lingchen He 何灵尘
François Rousset
7 months ago
Wait... what !? 😱 A new family of RNA-guided systems in prokaryotes ! Mind-blowing !
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TIGR-Tas: A family of modular RNA-guided DNA-targeting systems in prokaryotes and their viruses
RNA-guided systems provide remarkable versatility, enabling diverse biological functions. Through iterative structural and sequence homology-based mining starting with a guide RNA-interaction domain o...
https://www.science.org/doi/10.1126/science.adv9789
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co-chief
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7 months ago
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Lingchen He 何灵尘
Imperial Medicine
7 months ago
An experimental
#AI
system from Google, designed to support researchers, could supercharge science 🔬✨ Our researchers were among the first to test the 'co-scientist'—replicating a decade of work in just two days. More ⤵️
www.imperial.ac.uk/news/261293/...
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Google’s AI co-scientist could enhance research, say Imperial researchers | Imperial News | Imperial College London
An unreleased system designed to assist researchers has the potential to “supercharge science”, according to Imperial researchers.
https://www.imperial.ac.uk/news/261293/googles-ai-coscientist-could-enhance-research/
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Lingchen He 何灵尘
Aude Bernheim
8 months ago
New version of DefenseFinder available
defensefinder.mdmlab.fr
(& cli) Now encompassing 263 systems (+111 this year..!). Thanks
@ftesson.bsky.social
, DefenseFinder grandmaster. Full list of systems here: defense-finder-models/List_system_article.md at master · mdmparis/defense-finder-models
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Webservice | DefenseFinder webservice and knowledge base
On this site, you can freely use (without any login) the DefenseFinder webservice (see below) and get help to navigate the ever expanding world of defense systems.There is a collaborative knowledge ba...
https://defensefinder.mdmlab.fr/
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“I have a truly marvelous demonstration of this proposition which this margin is too narrow to contain”
8 months ago
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@jonaszpatkowski.bsky.social
and I pinpointed tail piracy as a new mechanism of horizontal gene transfer and explained the wide spread of cf-PICIs among different bacterial species and viromes.
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8 months ago
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Lingchen He 何灵尘
PHD Comics
8 months ago
Hey, my new book is out - read it as consolation for that terrible presentation:
bit.ly/OOYM
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