Ksenia Kuznetsova
@kkuznetsova.bsky.social
📤 262
📥 164
📝 6
Project Manager | Outreach | (ex-)🦓🐟 Transcription researcher Database Curation
@cdcode.bsky.social
reposted by
Ksenia Kuznetsova
Epigenetics at Helmholtz Munich
12 days ago
DEADLINE EXTENDED: Summer School on Chromatin Biology. Transform your knowledge and skills with this 2 week course focusing on ATAC-seq, ChIP-seq, ChIC/CUT&RUN, CUT&Tag, and bioinformatics analyses. Aug 17 - 29 Interested? Apply by April 18
bit.ly/4bZwHHR
#abcam
#summerschool
#phd
#helmholtzmunich
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Summary - Summer School on Chromatin Biology: A Hands-On Expedition
https://bit.ly/4t3Tbyx
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Ksenia Kuznetsova
Alex Figueiredo
15 days ago
Looking for MSc student(s) to be involved in some really cool germ-free experiments with house sparrows at
@niooknaw.bsky.social
@animalecol-nioo.bsky.social
! 🐣🦠Get in touch if you're interested and please share :)
nioo.knaw.nl/en/vacancies...
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Early-life microbiome assembly and its effects on bird phenotypes
We are looking for a motivated Masters/HBO/internship student to partake in upcoming microbiome manipulation experiments, investigating how this fascinating community impacts phenotypes in birds. Star...
https://nioo.knaw.nl/en/vacancies/early-life-microbiome-assembly-and-its-effects-on-bird-phenotypes
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Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
26 days ago
CD-CODE v2.2 RELEASE is live🤩 Our
#database
grew: 💡10 new
#condensates
💡639 new
#condensate
-
#protein
connections 💡107 new c-mods 💡10 new
#condensatopathies
🟣Find your favorite condensate
cd-code.org
and 👀see more details about the
#release
:
cd-code.org/release
#cdcode
#IDP
#RBP
#DatabaseUpdate
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Ksenia Kuznetsova
Mihaly Badonyi
about 1 month ago
My first manuscript in MPI colours! With
@tothpetroczylab.bsky.social
, we show that AlphaFold PAE-derived contact probabilities are well calibrated to the fraction of true interface contacts across experimentally determined protein dimers.
www.biorxiv.org/content/10.6...
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Ksenia Kuznetsova
Ariel Bazzini
about 1 month ago
🐟 We are hiring a postdoc! Interested in RNA regulation, gene expression, and zebrafish embryogenesis? Join the Bazzini Lab at
@stowersinstitute.bsky.social
www.stowers.org/labs/bazzini...
Please share! Details below 👇
#Postdoc
#RNAbiology
#zebrafish
#devbio
#Genomics
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Ksenia Kuznetsova
Darío Lupiáñez
about 2 months ago
🤩💪 Out now! 3D regulatory hubs in sex determination With
@mamartirenom.bsky.social
& Capel labs, led by
@imotagom.bsky.social
&
@jrotwitguez.bsky.social
1️⃣ METALoci – explore
#3DGenome
🧬 2️⃣ Non-coding region controlling Fgf9 🧩 3️⃣ Meis genes = new key players 🌟 👉
rdcu.be/e5sm2
1/n Bluetorial 👇
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Chromatin spatial analysis by METALoci unveils sex-determining 3D regulatory hubs
Nature Structural & Molecular Biology - METALoci, a new three-dimensional genome computational tool, reveals a major rewiring of regulatory interactions during sex determination. By combining...
https://rdcu.be/e5sm2
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Ksenia Kuznetsova
Alison Kickuth
3 months ago
Really happy to see my PhD first-author paper published in
@nature.com
! I’m very grateful to have worked with such a great team. Huge thanks to Urša Uršič, Michael Staddon, and Jan Brugués, as well as the
@brugueslab.bsky.social
, and the
@poldresden.bsky.social
and
@mpi-cbg.de
community!
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Ksenia Kuznetsova
Máté Varga
3 months ago
In the same year (1936) a short publication in the Anatomischer Anzeiger he presented what is probably first ever microfilm-record of zebrafish development. He was able to follow development from fertilization to the end of epiboly. Clearly, there was much to be done, but history intervene. (4/7)
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Fena Ochs
3 months ago
We are looking for a Postdoc at the Center for Gene Expression in Copenhagen. Deadline for applications is the 11th of January. If you are interested in 3D chromatin, SMC complexes, and super-resolution microscopy, join us.
www.nature.com/naturecareer...
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Postdocs at Center for Gene Expression in Department of Cellular and Molecular Medicine - Copenhagen, Hovedstaden (DK) job with University of Copenhagen | 12849488
We are looking for 2 or more highly motivated postdocs interested in ribosome biology, 3D chromatin organisation, or regulation of protein turnove...
https://www.nature.com/naturecareers/job/12849488/postdocs-at-center-for-gene-expression-in-department-of-cellular-and-molecular-medicine/?LinkSource=PremiumListing
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reposted by
Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
3 months ago
Happy New 2026 Year from Sci.STEPS 💙 Our team is enjoying a final bit of our holiday break. We're excited to return in January to start matching process and preparing for
#mentorship
Season 2026! We have so much planned for the coming months and can't wait to share the journey with you.🎄
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reposted by
Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
4 months ago
Our pre-holiday database update is live! 🎄CD-CODE v2.1 is here. Adding 🎁 11 new condensates 🎁 276 new proteins We now track a total of 13,983 condensate-protein relationships, plus 253 c-mods and 113 condensatopathies. Dive into the data and see more details about the release:
cd-code.org/release
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reposted by
Ksenia Kuznetsova
Society for Developmental Biology
4 months ago
🎄 Day 2 of the 24 Days of Development ✨🧬 This study uncovers a key role for foxl2l in zebrafish sex differentiation. 🐟 Loss of foxl2l blocks meiosis, causes germ cells to accumulate, and results in complete female-to-male sex reversal. ❄️🔍🌟
doi.org/10.1016/j.yd...
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Ksenia Kuznetsova
EMBL
4 months ago
Nobel laureate Svante Pääbo, Director at the Max Planck Institute for Evolutionary Anthropology in Leipzig, will deliver the 2026 EMBL Kafatos lecture. The lecture will explore how traces of Neanderthal DNA might shape human biology and health today.
www.embl.org/news/embl-an...
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Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
5 months ago
CD-CODE 2.0 is now published in
@narjournal.bsky.social
🤩 CD-CODE 2.0 stores
#biomolecular
#condensates
and their
#protein
and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies 👀
doi.org/10.1093/nar/...
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Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
10 months ago
☀️summer is here - and so is CD-CODE v1.10 release!🤩 💡CD-CODE has now 719 manually curated
#condensates
(and ~40% are
#human
associated!) 💡Check out new
#condensates
and updated
#protein
- condensate connections at
cd-code.org
#Bioinformatics
#DatabaseUpdate
#IDR
#RNP
#RBP
#cdcode
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Ksenia Kuznetsova
Nadine Vastenhouw
10 months ago
Thanks for the shoot-out
@zebrafishrock.bsky.social
! This beautiful work by the Hnisz lab characterized a micropeptide (killswitch) and used it to probe condensates. This opens the door to assess the function of condensates and
@shivalidongre.bsky.social
did just that in our beloved fish embryo.
add a skeleton here at some point
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Ksenia Kuznetsova
Katja Rust
10 months ago
Apparently we do not have a JEDI starter pack yet.
@fly-jedi.bsky.social
and everyone else: let me know which other Junior European
#Drosophila
Investigators are missing!
go.bsky.app/PcTGEMc
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reposted by
Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
12 months ago
🥳 Wrap-up of
#mentorship
Season 3! Yesterday’s we reflected on 3 months of insights and achievements. Thanks to
#mentors
for their support and dedication 🙏 and good luck to
#mentees
with their career path! Our community is there for you beyond this season! 💙 Hope to see many in the next seasons 🤗
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Exciting that CD-CODE is now connected to THE go-to resource for everything protein-related! It's a great step forward, directing further developments and outlook for our project
@tothpetroczylab.bsky.social
@mscheremetjew.bsky.social
🥳
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12 months ago
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Ksenia Kuznetsova
M. Scheremetjew
12 months ago
Very pleased that CD-Code is now cross-referenced by
#UniProt
and that we made it into the latest release:
www.uniprot.org/release-note...
Browse our manually curated
#condensates
at:
cd-code.org
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reposted by
Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
12 months ago
We're really excited that CD-CODE is now cross-referenced by
#UniProt
and has already been included in the latest release:
www.uniprot.org/release-note...
Spreading knowledge about
#biomolecular
#condensates
🥳
@ebi.embl.org
@sib.swiss
@mpi-cbg.de
@tothpetroczylab.bsky.social
@hymanlab.bsky.social
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UniProt
UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.
https://www.uniprot.org/release-notes/2025-04-23-release
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Ksenia Kuznetsova
Itai Yanai
about 1 year ago
Science delivers! Time & time again scientists make unexpected & important discoveries when following their curiousity! That's why we're organizing Woodstock Night Science, a reimagined conference to inspire us to new ideas. June 10-13
woodstock.img.cas.cz
Join us!
#TheConferenceToEndAllConferences
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Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
about 1 year ago
🍃CD-CODE update v1.09 is here!🍃 👀Check out the new
#biomolecular
#condensates
at
cd-code.org
👀We're continuing to update
#Protein
-
#condensate
connections and resolve issues! Join us to share your
#condensate
#expertise
as a contributor:
cd-code.org/signup
#Bioinformatics
#DatabaseUpdate
#IDR
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Ksenia Kuznetsova
Ana Janeva
about 1 year ago
I read the interviews last night and enjoyed them a lot - it shows that being a woman in science isn't a "one size fits all" experience, yet the challenges we face seem so universal. The system has work to do, but in the meantime, let's remember how many amazing and inspiring women surround us 👩🔬👩🔬
add a skeleton here at some point
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reposted by
Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
about 1 year ago
🔬🌐 Happy
#InternationalDayOfWomenAndGirlsInScience
! Women and girls have historically faced—and continue to face—barriers in accessing education and pursuing careers in
#STEM
. We celebrate the achievements and
#persistence
of women and girls who are shaping the future of science and innovation!💡🌟
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reposted by
Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
about 1 year ago
It was
#InternationalMentoringDay
on Friday and we want to celebrate our mentors and mentees 🤩
#Mentorship
isn't one-directional - it is a dynamic exchange where both mentor and mentee evolve together! As organizers - we are also constantly learning from the amazing Sci.STEPS community 💙
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Ksenia Kuznetsova
Nadine Vastenhouw
about 1 year ago
Calling on all RNA lovers! We are searching for phase-lock tubes to separate organic and aqueous phases during phenol:chloroform extractions of RNA because QIAGEN has discontinued the MaXtract tubes that we used to use. All input will be gratefully received!
@doragrbavac.bsky.social
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Ksenia Kuznetsova
Ana Janeva
about 1 year ago
I am thrilled to share that our latest pre-print from the
@evahoermanseder.bsky.social
lab 🐸🧬, is now online! Check it out here:
www.biorxiv.org/content/10.1...
Highlights and key findings from our study in the thread below 👇
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Digital Reprogramming Decodes Epigenetic Barriers of Cell Fate Changes
Fates of differentiated cells in our body can be induced to change by nuclear reprogramming. In this way, cells valuable for therapeutic purposes and disease modeling can be produced. However, the eff...
https://www.biorxiv.org/content/10.1101/2025.01.22.634227v1
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Ksenia Kuznetsova
Marlies Oomen
about 1 year ago
Very excited to share our paper on Gene and Transposable Element expression in mammalian preimplantation development, online today!
www.cell.com/cell/fulltex...
A short thread to highlight some of our findings 🧵
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Ksenia Kuznetsova
Meghana Oak
about 1 year ago
✨ Excited to share my latest preprint on how H3K4 methylation promotes transcriptional memory from gametes to embryos across a transcriptionally silent window — crucial for proper zygotic genome activation and development. 🐸🧬✨ 📄 Check it out here:
doi.org/10.1101/2025...
👇 Highlights below
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H3K4 methylation-promoted transcriptional memory ensures faithful zygotic genome activation and embryonic development
In the life of a vertebrate embryo, gene expression is initiated for the first time at zygotic genome activation (ZGA). Maternally expressed transcription factors present in the embryo are essential f...
https://doi.org/10.1101/2025.01.20.633863
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Ksenia Kuznetsova
Epigenetics at Helmholtz Munich
about 1 year ago
Best first bsky post posible 4us: 2025 INTERNSHIP CALL IS NOW OPEN! Ready for an adventure this summer? Join our 2025
#Epigenetics
#SummerInternship
at Helmholtz Munich! Dive into AI, stem cells, nutrition and cutting-edge research, while gaining hands-on experience. Apply now! 👉
bit.ly/40g1BWL
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Ksenia Kuznetsova
Lennart Hilbert
over 1 year ago
Re-upping this great overview article from
@mirlab.bsky.social
lab "Dynamic microenvironments shape nuclear organization and gene expression"
www.sciencedirect.com/science/arti...
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Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
over 1 year ago
We have closed our call for mentees for the third season of Sci.STEPS 🤩 This time with a record number of
#international
mentors and mentees 💙
#ThankYou
for your enthusiasm! We are looking forward to the next season: to connecting everyone, meeting at events and discussions in the chat groups!
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Ksenia Kuznetsova
Ilya Flyamer
over 1 year ago
Last chance to apply for the 2025 edition of the Sci.STEPS program! Don't miss your opportunity to get career advice and guidance from one of our experienced mentors.
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Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
over 1 year ago
🔊 Only a few days left to apply as a MENTEE for the 3rd Mentorship Season! 🌟 Submit your application by DECEMBER 15th! 🌟 Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path.
www.scisteps.org/call-2025
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Ksenia Kuznetsova
Toth-Petroczy lab
over 1 year ago
Our PICNIC tool predicts condensate-proteins regardless of their structural disorder across organisms
@naturecomms.bsky.social
. Congratulations to
@annaha-poetry-art.bsky.social
for developing the algorithm and to Hari
@hymanlab.bsky.social
for the experiments!
www.nature.com/articles/s41...
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PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms - Nature Communications
Here the authors report PICNIC (Proteins Involved in CoNdensates In Cells), a machine learning algorithm that predicts approximately 40–60% of proteins form condensates in various organisms, showing n...
https://www.nature.com/articles/s41467-024-55089-x
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Ksenia Kuznetsova
Emmanuel Cazottes
over 1 year ago
Navigating your PhD? Sci.STEPS connects you with experienced peers who've navigated these waters before. From career paths to research challenges, having someone to talk to makes the difference. Join Sci.STEPS and set your course! Apply now 🧭✨
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we've updated CD-CODE
#condensate
database to its ❄️winter❄️ version :) go check if your favorite condensate made it through! no? add it yourself and help us keep the CD-CODE updated 💟
cd-code.org/signup
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over 1 year ago
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@scisteps.bsky.social
is still looking for
#mentees
for the season 2025 (Feb-Apr) 👀 Calling
#undergrads
,
#master
students,
#PhD
students: This program offers a 3-month
#mentorship
experience, providing the chance to work with an amazing mentor and expand your network 🌐 Please share 💙
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over 1 year ago
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Ksenia Kuznetsova
Ilya Flyamer
over 1 year ago
After a month of hard work to create a pool of over 50 fantastic mentors, we have opened the call for mentee applications! If you are an early career researcher and need help navigating the career path (be it academia or industry, or anything else), see if there is a mentor for you and apply!
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Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
over 1 year ago
How a
#mentor
can help your scientific career?🌟 Mentors help you avoid common pitfalls🕳️, review your application materials📘, share personal experiences🫶, guide to evaluate your skills👀. Together, you celebrate your milestones (big and small!)! Such amazing mentors joined us this time ⤵️
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Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
over 1 year ago
📢We have opened the call for
#mentees
! Apply and become a mentee:
scisteps.org/call-2025
Sci.STEPS mentors share with you their knowledge and insights on studying abroad, navigating relocations, building careers, and transitioning between fields!💙
@phdvoice.bsky.social
@dragonflymh.bsky.social
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Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
over 1 year ago
Are you doing a
#PhD
and asking: "Should I continue or leave?" - you are not alone💙 It's a unique and demanding journey: to move forward, you need to pause and reflect deeply - even if that means considering to quit. Our new
#sciTIPS
story about navigating this tough decision:
tinyurl.com/e36wawcu
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Next to my day job curation
@cdcode.bsky.social
, by night 🦸♀️😄 I am co-organising scientific career mentorship program Sci.STEPS
@scisteps.bsky.social
- we've just closed the call for mentors and will open the call for mentees soon! very much looking forward to the next Season in February 2025 💙
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over 1 year ago
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Ksenia Kuznetsova
Robert Haase
over 1 year ago
Hi
#BioImaging
+
#BioImageAnalysis
folks, we need your help! If you have some spare minutes, please fill out the 2024 community survey:
docs.google.com/forms/d/e/1F...
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Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
over 1 year ago
Thank you,
@rnadavid.bsky.social
for compiling this starter pack 🤩 Join the condensate crowd!
#condensates
#phaseseparation
#granules
#IDPs
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Ksenia Kuznetsova
Ilya Flyamer
over 1 year ago
Last day to apply as a mentor to the Sci.STEPS program!
@academic-chatter.bsky.social
#mentoring
#science
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Ksenia Kuznetsova
Joana Pereira
over 1 year ago
🚨The future Pereira lab is hiring! We will start at
@vibai.bsky.social
in Feb 2025 and are looking for a postdoc to join our team 🤓 If you want to leverage AI and large networks to explore and understand the protein universe 🌌, check below! *deadline: 21 Nov 2024*
jobs.vib.be/j/93314/post...
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Postdoc in Protein Computational Biology / Structural Bioinformatics - VIB
Job description We are seeking a postdoc to join the Pereira Lab for an interdisciplinary project that integrates structural bioinformatics, protein evolution, complex network analysis, and deep learn...
https://jobs.vib.be/j/93314/postdoc-in-protein-computational-biology-structural-bioinformatics
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Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia
over 1 year ago
🔊☎️Calling the hive mind of the
#Condensate
Community of
#bluesky
: Join us in curating the CD-CODE! Do you have a favorite condensate or are researching some that are not yet in
cd-code.org
? We want your input and expertise!🧠 🔗Easy sign-up here:
cd-code.org/signup
and add a new condensate 🎦⤵️
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Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists
over 1 year ago
🚀Join Us for the Season 2025 as a
#Mentor
! We are looking for mentors from diverse paths and stages of their
#scientific
careers to guide and inspire our
#mentees
. Want to become a mentor? ✏️Register here:
tinyurl.com/sciSTEPS2025
🗓 Deadline: 17.11.2024
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