Haaris Ahsan Safdari
@haarissafdari.bsky.social
📤 1034
📥 1151
📝 31
Staff Scientist EM @ MRC LMB, Cambridge 🇬🇧 Single particle cryo-EM, cryo-electron tomography
reposted by
Haaris Ahsan Safdari
Nature
1 day ago
Nature research paper: A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome
go.nature.com/3RMNwPW
loading . . .
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of the bacterial large ribosomal subunit.
https://go.nature.com/3RMNwPW
0
20
8
reposted by
Haaris Ahsan Safdari
Animalcules
1 day ago
www.nature.com/articles/s41...
#microsky
loading . . .
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of ...
https://www.nature.com/articles/s41586-026-10589-2
0
2
2
reposted by
Haaris Ahsan Safdari
Animalcules
1 day ago
www.genengnews.com/topics/infec...
loading . . .
New Antibiotic, Manikomycin, Acts on Novel Ribosomal Target
Researchers discover manikomycin, a novel antibiotic that kills drug-resistant bacteria by targeting a previously unknown ribosomal target.
https://www.genengnews.com/topics/infectious-diseases/new-antibiotic-manikomycin-acts-on-novel-ribosomal-target/
0
3
2
reposted by
Haaris Ahsan Safdari
Gorgias UrUrUrenkel📣🔊
about 16 hours ago
🧪🦠 Streptomyces rimosus "Das Antibiotikum mit dem Namen Manikomycin wirkt gegen multiresistente Bakterien und könnte langfristig zur Entwicklung neuer Behandlungsoptionen beitragen"
www.welt.de/gesundheit/a...
👇
www.nature.com/articles/s41...
loading . . .
Antibiotika: Unerwarteter Wirkstoff gegen multiresistente Keime in längst erforschtem Bakterium gefunden - WELT
Ausgerechnet ein lange erforschter Mikroorganismus liefert einen bislang unbekannten Wirkstoff gegen multiresistente Keime. Manikomycin ist noch weit von der Klinik entfernt – zeigt aber, wo die Antib...
https://www.welt.de/gesundheit/article6a213387aa3fa782d1471400/antibiotika-unerwarteter-wirkstoff-gegen-multiresistente-keime-in-laengst-erforschtem-bakterium-gefunden.html
0
15
2
reposted by
Haaris Ahsan Safdari
Wiep Klaas Smits (ExpBac/CMAT)
10 days ago
Diverse mechanisms of translation arrest by a Clostridia ribosome stalling peptide CliM -
pubmed.ncbi.nlm.nih.gov/42151144/
loading . . .
Diverse mechanisms of translation arrest by a Clostridia ribosome stalling peptide CliM - PubMed
Ribosome arrest peptides undergo programmed translational stalling in response to changes in the cellular environment to feedback-regulate gene expression. CliM, an arrest peptide in Clostridia, is en...
https://pubmed.ncbi.nlm.nih.gov/42151144/
0
6
5
reposted by
Haaris Ahsan Safdari
New paper in
@natcomms.nature.com
! We show how the Clostridia peptide CliM acts as a molecular handbrake to monitor YidC activity. Cryo-EM & MD show it stalls the ribosome using diverse mechanisms until membrane insertion releases it. Paper:
www.nature.com/articles/s41...
loading . . .
Diverse mechanisms of translation arrest by a Clostridia ribosome stalling peptide CliM - Nature Communications
CliM is a ribosome arrest peptide in Clostridia. Here, the authors show that CliM adopts helices and extensively interacts with the ribosome. The penultimate residue sterically blocks A-site accommoda...
https://www.nature.com/articles/s41467-026-72673-5
18 days ago
0
8
5
reposted by
Haaris Ahsan Safdari
Wilson Lab
2 days ago
www.nature.com/articles/s41...
loading . . .
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome - Nature Communications
In this work authors show how minimal mutations in proline-rich antimicrobial peptides can flip their orientation in the ribosome exit tunnel, switching their mechanism from stalling translation termi...
https://www.nature.com/articles/s41467-026-74007-x
0
6
1
reposted by
Haaris Ahsan Safdari
Frances Yap
1 day ago
🔽 (the first) ribosomal E-site targeting antibacterial; producer avoids self-toxicity by rRNA methylation.
#Ribosome
#AMR
add a skeleton here at some point
0
7
2
reposted by
Haaris Ahsan Safdari
🚨 New in
@natcomms.nature.com
🚨 Excited to share our paper on how proline-rich antimicrobial peptides interact with the bacterial ribosome. Using cryo-EM, we found that tiny sequence changes cause these peptides to "flip" orientation in the exit tunnel! 🔄🧫 Read:
www.nature.com/articles/s41...
loading . . .
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome - Nature Communications
In this work authors show how minimal mutations in proline-rich antimicrobial peptides can flip their orientation in the ribosome exit tunnel, switching their mechanism from stalling translation termi...
https://www.nature.com/articles/s41467-026-74007-x
2 days ago
0
10
8
reposted by
Haaris Ahsan Safdari
🚨 New in
@natureportfolio.nature.com
! 🚨 Excited to share our discovery of Manikomycin—a novel antibiotic tackling the AMR crisis! 🦠 Using cryo-EM, we found it’s the first-in-class to target the ribosomal E-site, blocking tRNA entry and beating multi-drug resistance. Read:
doi.org/10.1038/s415...
loading . . .
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of ...
https://doi.org/10.1038/s41586-026-10589-2
2 days ago
0
11
4
reposted by
Haaris Ahsan Safdari
Gerry Wright
2 days ago
The latest from the lab. Manikomycin, a new cyclic depsipeptide antibiotic from an 'old' source, the oxytetracycline producer Streptomyces rimosus. Still lots to be learned from this genus! Manikomycin blocks the E-site of the bacterial ribosome. A first.
links.springernature.com/f/a/Q0JMeeZK...
loading . . .
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of ...
https://links.springernature.com/f/a/Q0JMeeZKq3aJACjFEVvk5g~~/AABE5hA~/rp-GS7CdiUyek8xYnLT-Qddxup08xXtSxUZxekHEfUwSiFQfEhXSWkTNNgA2vviXCnkcR4SHGSPDvfNyHksUGWT2qXCaoUitXvUOTwj6EozeEpd_5suSvJAdTv8BiYnC6VJ3ueFtiMkKjeAGXNG5lJztloJ6c7fcNJNtsONG9TtgsXvX7NVhvUQ9H1KSRlT_UQb9F3fPHJ43qqwNAe8b7D1zoLU6cjmJuwRHfsqUR7bQdyi4eA1sy4Ydz90eXECYu5Bq6DzcbJAlaSuQTusJF5qKB5AhBf0Py0Ezebwl1fQ~
0
21
10
🚨 New in
@natureportfolio.nature.com
! 🚨 Excited to share our discovery of Manikomycin—a novel antibiotic tackling the AMR crisis! 🦠 Using cryo-EM, we found it’s the first-in-class to target the ribosomal E-site, blocking tRNA entry and beating multi-drug resistance. Read:
doi.org/10.1038/s415...
loading . . .
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of ...
https://doi.org/10.1038/s41586-026-10589-2
2 days ago
0
11
4
🚨 New in
@natcomms.nature.com
🚨 Excited to share our paper on how proline-rich antimicrobial peptides interact with the bacterial ribosome. Using cryo-EM, we found that tiny sequence changes cause these peptides to "flip" orientation in the exit tunnel! 🔄🧫 Read:
www.nature.com/articles/s41...
loading . . .
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome - Nature Communications
In this work authors show how minimal mutations in proline-rich antimicrobial peptides can flip their orientation in the ribosome exit tunnel, switching their mechanism from stalling translation termi...
https://www.nature.com/articles/s41467-026-74007-x
2 days ago
0
10
8
reposted by
Haaris Ahsan Safdari
Wilson Lab
2 days ago
www.nature.com/articles/s41...
loading . . .
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of ...
https://www.nature.com/articles/s41586-026-10589-2
0
17
7
reposted by
Haaris Ahsan Safdari
Wilson Lab
2 days ago
www.nature.com/articles/s41...
loading . . .
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome - Nature Communications
In this work authors show how minimal mutations in proline-rich antimicrobial peptides can flip their orientation in the ribosome exit tunnel, switching their mechanism from stalling translation termi...
https://www.nature.com/articles/s41467-026-74007-x
0
10
4
reposted by
Haaris Ahsan Safdari
cryoEM papers
17 days ago
Diverse mechanisms of translation arrest by a Clostridia ribosome stalling peptide CliM
pubmed.ncbi.nlm.nih.gov/42151144/
#cryoem
0
2
2
New paper in
@natcomms.nature.com
! We show how the Clostridia peptide CliM acts as a molecular handbrake to monitor YidC activity. Cryo-EM & MD show it stalls the ribosome using diverse mechanisms until membrane insertion releases it. Paper:
www.nature.com/articles/s41...
loading . . .
Diverse mechanisms of translation arrest by a Clostridia ribosome stalling peptide CliM - Nature Communications
CliM is a ribosome arrest peptide in Clostridia. Here, the authors show that CliM adopts helices and extensively interacts with the ribosome. The penultimate residue sterically blocks A-site accommoda...
https://www.nature.com/articles/s41467-026-72673-5
18 days ago
0
8
5
If you are looking for a PhD with great science, great people, and great views of Hamburg, here is your chance! (In the lab of my wonderful former supervisor).
add a skeleton here at some point
8 months ago
0
1
0
reposted by
Haaris Ahsan Safdari
cryoEM papers
10 months ago
VitriFlex: An Open-Source, Modular, and Customizable Robotic Platform for Cryo-EM Grid Preparation
www.biorxiv.org/content/10.1101/2025.07.24.666634v1
#cryoem
0
6
5
reposted by
Haaris Ahsan Safdari
Wilson Lab
11 months ago
Preprint from our collaboration with the labs of Gerry Wright and Shura Mankin identifying the first translation inhibitor binding to the E-site of the bacterial ribosome…
www.researchsquare.com/article/rs-6...
loading . . .
A Natural Depsipeptide Antibiotic that Targets the E site of the Bacterial Ribosome
A significant challenge in addressing the antibiotic resistance crisis is identifying new antimicrobial compounds. Although natural products produced by fungi and bacteria, particularly actinomycetes,...
https://www.researchsquare.com/article/rs-6925047/v1
0
17
6
Excited to share that I received the Best Poster Prize at Translation UK 2025 in Edinburgh! Grateful to the
@biochemsoc.bsky.social
and Bioscience Reports for supporting young researchers.
#TranslationUK2025
#StructuralBiology
#CryoEM
11 months ago
1
13
2
New preprint alert! Read about Manikomycin, a hidden antibiotic from Streptomyces rimosus that targets the ribosomal E site, revealing a novel MOA against MDR pathogens. Even old strains have surprises. 🧬💥
doi.org/10.21203/rs....
#Antibiotics
#CryoEM
#Microbiology
loading . . .
A Natural Depsipeptide Antibiotic that Targets the E site of the Bacterial Ribosome
A significant challenge in addressing the antibiotic resistance crisis is identifying new antimicrobial compounds. Although natural products produced by fungi and bacteria, particularly actinomycetes,...
https://doi.org/10.21203/rs.3.rs-6925047/v1
11 months ago
0
4
0
Heading to
#TranslationUK2025
? Come find me at Poster P002 – I’ll be showing how kasugamycin, edeine & GE81112 target different steps of 30S initiation complex formation 🧬 Let’s chat ribosomes, antibiotics & translation!
@biochemsoc.bsky.social
#BiochemEvent
#SciComm
11 months ago
0
8
1
🧬 Spoke at the 2nd Polish RNA Biology Meeting in Poznań! Presented my PhD work on how kasugamycin, edeine & GE81112 disrupt distinct steps of 30S initiation complex formation using cryo-EM. Grateful for the engaged crowd & vibrant discussions!
#CryoEM
#RNA
11 months ago
1
6
1
reposted by
Haaris Ahsan Safdari
Svetlana Dodonova
about 1 year ago
We’ve uncovered Asgard chromatin structures formed by a Hodarchaeal histone : closed hypernucleosome conserved in archaea and an open form resembling the H3-H4 eukaryotic octasome. Fantastic work by
@harshranawat.bsky.social
!
www.biorxiv.org/content/10.1...
#Chromatin
#Asgard
#Archaea
#cryoEM
loading . . .
13
234
113
reposted by
Haaris Ahsan Safdari
Philippe Van der Stappen
about 1 year ago
Hey
#TeamTomo
, Ever been in need of a tutorial about the fundamentals of cryo-electron tomography? From preprocessing raw frames to high-res subtomogram averaging? That's why
@florentwaltz.bsky.social
and I made this website!
tomoguide.github.io
Follow the thread 1 /🧵
#CryoET
#CryoEM
🔬🧪
loading . . .
Welcome to TomoGuide
A step-by-step Cryo-ET guide
https://tomoguide.github.io/
5
116
48
reposted by
Haaris Ahsan Safdari
MRC Laboratory of Molecular Biology
about 1 year ago
A colder frontier in cryo-EM 🧪🔬 Chris Russo’s group, inc. Joshua Dickerson, adapted
#cryoEM
to work at liquid helium temperatures (13 kelvins), where every frame captured contains more information than the equivalent using liquid nitrogen (81 kelvins). Read more:
tinyurl.com/mwwcunkc
#LMBResearch
0
49
26
reposted by
Haaris Ahsan Safdari
Wilson Lab
about 1 year ago
Fresh off the press…our latest study on the Structure of a Gcn2 dimer in complex with the large 60S ribosomal subunit | great collaboration with inada and Zaher labs. Data collected by Bertrand Beckert at the DCI EPFL
www.pnas.org/doi/10.1073/...
loading . . .
Structure of a Gcn2 dimer in complex with the large 60S ribosomal subunit | PNAS
The integrated stress response (ISR) is a central signaling network that enables eukaryotic cells to respond to a variety of different environmenta...
https://www.pnas.org/doi/10.1073/pnas.2415807122
4
26
14
reposted by
Haaris Ahsan Safdari
Pilhofer Lab 🦠❄️🔬
about 1 year ago
Asgard archaea have actin - but what about microtubules? Where do they come from? 🧐 Our new paper
www.cell.com/cell/fulltex...
by
@xujwet.bsky.social
&
@florianwollweber.bsky.social
, in collaboration with the Schleper & Wieczorek labs, describes tiny Asgard microtubules!
#TeamTomo
#ArchaeaSky
1/6
7
258
125
reposted by
Haaris Ahsan Safdari
Kat Toropova
about 1 year ago
We are thrilled to announce the 2025 EMBO practical course in cryo-em image processing, Birkbeck College, London, 9-16 Sept 2025. More info & apply:
meetings.embo.org/event/25-cry...
Organisers Giulia Zanetti & Helen Saibil. Beautiful image from co-organizer
@carolynmoores1.bsky.social
lab.
loading . . .
Image processing for cryo-electron microscopy
Cryo electron microscopy (cryo EM) is a major structural biology method for studying macromolecular complexes and cellular structures in their native states. Stable high resolution cryo microscopes, …
https://meetings.embo.org/event/25-cryo-em
1
31
22
reposted by
Haaris Ahsan Safdari
Landau Lab
about 1 year ago
Exciting News! We’re thrilled to announce the first Functional Amyloid Meeting at DESY! Join us for a deep dive into the latest breakthroughs in functional fibrils, with a spotlight on amyloid molecular and cellular mechanisms and their biomedical applications.
landau-cssb.de/meeting-of-f...
0
9
10
reposted by
Haaris Ahsan Safdari
Wilson Lab
about 1 year ago
www.biorxiv.org/content/10.1...
loading . . .
Blocking IF3N delays bacterial translation initiation
Bacterial translation initiation factor IF3 is composed of two distinct domains, a well-characterized C-terminal domain (IF3C), which enhances the speed and fidelity of translation initiation, and a l...
https://www.biorxiv.org/content/10.1101/2025.03.14.643242v1
0
7
2
reposted by
Haaris Ahsan Safdari
cryoEM papers
about 1 year ago
Blocking IF3N delays bacterial translation initiation
www.biorxiv.org/content/10.1101/2025.03.14.643242v1
#cryoem
0
1
1
reposted by
Haaris Ahsan Safdari
cryoEM papers
about 1 year ago
The translation inhibitors kasugamycin, edeine and GE81112 target distinct steps during 30S initiation complex formation
pubmed.ncbi.nlm.nih.gov/40075065/
#cryoem
0
1
1
reposted by
Haaris Ahsan Safdari
Wilson Lab
about 1 year ago
Congrats to Haaris
@haarissafdari.bsky.social
for successfully defending his PhD thesis today - 2 days after his second first author paper came out! Good timing!
1
10
1
reposted by
Haaris Ahsan Safdari
Mariusz Czarnocki-Cieciura
about 1 year ago
Fascinating things happening at the IIMCB nowadays! This is one of the first patterns milled with our new TFS Hydra Bio Plasma-FIB, and - most likely - the smallest IIMCB logo ever!
1
7
2
reposted by
Haaris Ahsan Safdari
about 1 year ago
www.nature.com/articles/s41...
loading . . .
The translation inhibitors kasugamycin, edeine and GE81112 target distinct steps during 30S initiation complex formation - Nature Communications
The antibiotics kasugamycin, edeine and GE81112, inhibit translation initiation. Here, the authors present cryo-electron microscopy structures of 30S initiation intermediate complexes with these drugs...
https://www.nature.com/articles/s41467-025-57731-8
1
1
1
reposted by
Haaris Ahsan Safdari
www.nature.com/articles/s41...
loading . . .
The translation inhibitors kasugamycin, edeine and GE81112 target distinct steps during 30S initiation complex formation - Nature Communications
The antibiotics kasugamycin, edeine and GE81112, inhibit translation initiation. Here, the authors present cryo-electron microscopy structures of 30S initiation intermediate complexes with these drugs...
https://www.nature.com/articles/s41467-025-57731-8
about 1 year ago
0
4
2
reposted by
Haaris Ahsan Safdari
Jamie Cate
about 1 year ago
Full link:
www.nature.com/articles/s41...
add a skeleton here at some point
0
7
2
reposted by
Haaris Ahsan Safdari
Excited to share my first-author paper in Nature Communications! Using cryo-EM, we reveal how kasugamycin, edeine, and GE81112 inhibit bacterial translation initiation by binding the 30S ribosomal subunit in distinct ways. Read more:
www.nature.com/articles/s41...
loading . . .
The translation inhibitors kasugamycin, edeine and GE81112 target distinct steps during 30S initiation complex formation - Nature Communications
The antibiotics kasugamycin, edeine and GE81112, inhibit translation initiation. Here, the authors present cryo-electron microscopy structures of 30S initiation intermediate complexes with these drugs...
https://www.nature.com/articles/s41467-025-57731-8
about 1 year ago
0
10
6
reposted by
Haaris Ahsan Safdari
Wilson Lab
about 1 year ago
Our study on translation initiation inhibitors now published after peer review at
nature.com/articles/s4146…
. Great collaboration with Pohl Milon and team. Data collected a
t @cssbhamburg.bsky.soci
al
loading . . .
1
20
11
Excited to share my first-author paper in Nature Communications! Using cryo-EM, we reveal how kasugamycin, edeine, and GE81112 inhibit bacterial translation initiation by binding the 30S ribosomal subunit in distinct ways. Read more:
www.nature.com/articles/s41...
loading . . .
The translation inhibitors kasugamycin, edeine and GE81112 target distinct steps during 30S initiation complex formation - Nature Communications
The antibiotics kasugamycin, edeine and GE81112, inhibit translation initiation. Here, the authors present cryo-electron microscopy structures of 30S initiation intermediate complexes with these drugs...
https://www.nature.com/articles/s41467-025-57731-8
about 1 year ago
0
10
6
reposted by
Haaris Ahsan Safdari
Alexis Verger 🧬🧫🧪
over 1 year ago
#cryoET
of Mycoplasma pneumoniae Chloramphenicol-bound ribosomes at a global 3.0 Å resolution
www.nature.com/articles/s41...
2
37
14
Amazing work!
add a skeleton here at some point
over 1 year ago
0
4
0
reposted by
Haaris Ahsan Safdari
Olivier Duss
over 1 year ago
First paper of our lab today
@natureportfolio.bsky.social
by Nussi! We provide a real-time movie on how
#transcription
and
#translation
cooperate using
#single-molecule
FM: we find long-range
#ribosome
/ RNAP communication mediated by
#RNA
looping!
@embl.org
#RNAbiology
#RNASky
t.co/a24Xxcxdo0
15
257
87
reposted by
Haaris Ahsan Safdari
over 1 year ago
Thrilled to share our recent discovery from the Agrawal and Ojha Labs: an Actinobacteria-specific ribosome hibernation factor bound to Mycobacterium tuberculosis ribosomes isolated from biofilms.
www.biorxiv.org/content/10.1...
@cryoempapers.bsky.social
@mycobacterium.bsky.social
0
11
8
reposted by
Haaris Ahsan Safdari
Open Access Tracking Project
over 1 year ago
Bluesky now tracked as Altmetric research attention source | Research Information
https://www.researchinformation.info/news/bluesky-now-tracked-as-altmetric-research-attention-source/
loading . . .
Bluesky now tracked as Altmetric research attention source - Research Information
Altmetric tracks Bluesky attention in real-time, detecting posts, reposts and quotes that contain a direct link to a scholarly output.
https://www.researchinformation.info/news/bluesky-now-tracked-as-altmetric-research-attention-source/
0
36
11
reposted by
Haaris Ahsan Safdari
Rob Fagan
over 1 year ago
We have 2 fully funded PhD studentships available through the new Yorkshire Biosciences DTP (starting Oct 25) - please share! Both projects are focussed on
#phage
that infect
#Cdifficile
#microsky
#phage
#evolution
#cryoEM
#AFM
www.whiterose-mechanisticbiology-dtp.ac.uk/yorkshire-bi...
2
51
37
reposted by
Haaris Ahsan Safdari
MRC Laboratory of Molecular Biology
over 1 year ago
Considering a PhD in molecular biology? There’s still time to apply to join the LMB in October 2024. Applications close on 3rd DEC. Visit our website for more info:
www2.mrc-lmb.cam.ac.uk/students/int...
0
8
14
reposted by
Haaris Ahsan Safdari
Fillip Port
over 1 year ago
Starter packs are a good indicator of the size of Bluesky adoption. Last week they were called something like 'Cell Biologists', this week it is 'Cytoskeleton', and next week we should see the first 'Connoisseurs of microtubule plus end motors' popping up.
1
14
1
Load more
feeds!
log in