News in Proteomics Research blog post | Bruker ASMS! Delaying launches until they can support the products they have? proteomicsnews.blogs... --- #proteomics #prot-other

www.biorxiv.org/content/10.6... 1/ Proteomics method development often optimizes for IDs. But for cohort biology, IDs only matter if they remain quantitative, precise, and powered. We ask how chromatographic sampling density propagates from peaks → LOQ → discovery. 🧵

1 month left! www.brixenproteomics.org

MAJOR update for SCP Viz! github.com/OrsburnLab-P... - all the smart SCP code everyone hid on line 7,000 of their R package in a GUI with push buttons, lassos, and primary colors. Plus a special tab for peer reviewers who don't want to download 3TB of instrument .raw data. Live on the Pitt HPC now!

We are hiring! The Matthias Mann Lab @mannlab.bsky.social @mpibiochem.bsky.social in Munich has 3 exciting #postdoc openings in proteomics & computational biology. #MSProteomics #PostDoc postdocprogram.mpg.de

TUM - Doctoral Candidate f/m/d in computational proteomics/bioinformatics portal.mytum.de/jobs... --- #proteomics #prot-jobs

Claude Code and I whipped up some software for running DIA-NN and LIMPA. I kinda like it so far. Has a lot of features I've always wanted and now I can make it myself !!, well with Claude Codes help ;) youtu.be/lXxqDpCHXOA

Faces of Mass Spectrometry/Bini Ramachandran #JASMS pubs.acs.org/doi/10.1021/...

All values (high intensity and low intensity) need to be within the linear dynamic range of the instrument platform to be safely adjusted by software normalizations. Overloaded samples suffer saturation, underloaded samples have things go below limits of detection. There are no shortcuts in life.

Astral with 2 minute gradients! More quantification off of triangles! www.nature.com/articles/s41... - I get it, I'm being the old jerk shouting at cars about how in my day we had to have more than 1 scan/peak.

Proteomics bioinformatics by EMBL-EBI Training is the course for you if you want to discover: - Mass spectrometry - Quantitative proteomics - Data acquisition approaches - Proteogenomics - @emblebi.bsky.social resources: IntAct, PRIDE, and UniProt Apply by 15 March: www.ebi.ac.uk/training/eve...

💡“DEprot” is now out on @narjournal.bsky.social Genomics and Bioinformatics. With Nils Eickhoff ( @zwartlab.bsky.social, @nkinl.bsky.social & @oncodeinstitute.bsky.social), we designed this “all-in-one” tool to facilitate the analyses of LFQ-based proteomics data. academic.oup.com/nargab/artic...

I have a 3-year postdoc position available at University of Manchester for a mass spec expert in proteomics. The person will be involved in exciting projects in single cell proteomics, drug discovery and innate immunity - on timsTOF Ultra AIP & HF & Astral Zoom. www.jobs.ac.uk/job/DQJ093/r...

Want to make your DIA-NN QC reports in a web browser and then go back in time to the 80's and 90's? Now you can with my completely AI vibe coded streamline app! dia-nn-qc.streamlit.app You're welcome 😜

Special Issue on Women in Proteomics www.mcponline.org/ar... --- #proteomics #prot-paper

Yasset Perez-Riverol | This chart is a warning light for anyone in science or tech. www.linkedin.com/pos... --- #proteomics #prot-other

A New Detailed Mass Offset Search in MSFragger for Improved Interpretation of Complex PTMs pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Limited proteolysis-coupled mass spectrometry captures proteome-wide protein structural alterations and biomolecular condensation in living cells link.springer.com/ar... --- #proteomics #prot-paper

News in Proteomics Research blog post | Finally! A ready-to-run human plasma proteomics standard! proteomicsnews.blogs... --- #proteomics #prot-other

PhD Fellow in Spatial Proteomics of Cardiac Conduction and Disease Mechanisms | JobTeaser www.jobteaser.com/nl... --- #proteomics #prot-jobs

Multi spectral imaging at UV and IR range to mark sampling zones..and followed it up with hydrophobic ion-ion interaction to identify peptides.. old vs new peptides distinguished by monitoring of oxidation and deamidation.. sleuths at work..#paleoproteomics

🚨 Job opportunity The Proteomics Core is hiring a (Junior) Technical Support Team Member to keep its mass-spec proteomics services running smoothly. 🗓 Deadline: November 30, 2025 👉 Apply via the VIB job site https://vib.be/en/technologies/about-vib-technologies/jobs#/job-description/127269

Utrecht University is hiring: Postdoc Position in Proteomics and Immuno-Oncology

🎓 Upcoming Online Course: R/Bioconductor for Mass Spectrometry & Proteomics 📅 November 17–19, 2025 Join Dr Laurent Gatto for a hands-on course on mass spectrometry–based proteomics analysis using R and Bioconductor. 👉 Register & learn more: www.physalia-courses.org/courses-work...

Need to do some cutting edge Proteomics Differential expression? Maybe give Limpa a try! Guaranteed to rise to the occasion ...despite its name ! youtu.be/vqeOT8xcycc

Some new content at GitHub: github.com/pwilmart/pow... We have been measuring proteomes for a long time but almost never think about our data and results at the whole proteome level. We lose a lot of information when we think one protein at a time. We need to multiplex our thinking.

Are you having a LaPh? Diverse roles of Labile Phosphorylation in mammalian cells portlandpress.com/bi... --- #proteomics #prot-paper

"... if we're competitive from a price, thoughput and coverage perspective, the other technologies seem more than a bit silly. " That sums it up👍🏾

Enrichment of Cysteine S-palmitoylated peptides using Sodium Deoxycholate Acid Precipitation www.mcponline.org/ar... --- #proteomics #prot-paper

Struggling to compare Bruker timsTOF methods or extract window schemes from raw .d files? I developed a free desktop tool to solve this: timsCompare! 🚀 It automates the manual work of extracting method parameters, presenting them in a structured and comparable view. (A thread 🧵)

Postdoctoral Fellow to study host-virus responses using proteomics and mass spectrometry stilling.forskning.n... --- #proteomics #prot-jobs

Twenty-Five Years of High-Throughput Screening of Biological Samples with Mass Spectrometry: Current Platforms and Emerging Methods #AC pubs.acs.org/doi/10.1021/...

Boosting the speed and accuracy of protein quantification algorithms in mass spectrometry-based proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

PhD Position in Experimental Mass Spectrometry-Based Proteomics | JobTeaser www.jobteaser.com/fr... --- #proteomics #prot-jobs

Okay y’all. I’m at a complete loss. DIA is better on EVERYTHING on my Ultra2 except plasma digests. Neat, PC, PCA-N. DDA (pasef) works better. Coisolation FDR artifact? Anyone else see this?

PAMPA: A Software for Peptide Markers and Taxonomic Identification for ZooMS Samples in Archaeology and Paleontology pubs.acs.org/doi/abs... --- #proteomics #prot-paper

Finally, we're looking for someone to join our #MassSpec Core Facility to support all the protein/peptide MS & development needs of our research groups utilising: 🧪Protein chemistry 📈Liquid chromatography ⚛️Tandem mass spectrometry 🖥️Data analysis More at: www.cruk.manchester.ac.uk/career/mi-25...

Best practices and tools in R and Python for statistical processing and visualization of lipidomics and metabolomics data #NatCommun www.nature.com/articles/s41...

91962-Research Technician, Proteomics Core | Memorial Sloan Kettering Cancer Center careers.mskcc.org/va... --- #proteomics #prot-jobs

Exciting news - we are recruiting new Group Leaders! 🥼 We are seeking to appoint exceptional early-career scientists & clinician scientists as #GroupLeaders to develop bold, innovative, high-impact #CancerResearch programmes Full details on our website: www.cruk.manchester.ac.uk/career/new-g...

Are you using DIA mass spectrometry in proteomics? We have just put this paper online: www.biorxiv.org/content/10.1... Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs) 1/4

Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High‐Throughput PRM‐MS in an Inflammatory Bowel Disease Cohort #AngewChem onlinelibrary.wiley.com/doi/10.1002/...

‘Lipstick on a pig’: how to fight back against a peer-review bully #Nature www.nature.com/articles/d41...

Final countdown! Only 3 days to go until the YPIC Webinar #19: Transition from Academia to Start-Up. #YPIC #Proteomics #StartUpScience #ScienceCareers #AcademicToIndustry

Proteomics Webinar: DIA with FragPipe, DIA-NN, and Skyline Presenters: Eduard Sabidó and Brendan MacLean When: Tuesday, September 16, 8am (Pacific Time) Register Now ... skyline.ms/project/home... #massspec #proteomics

Taking cue from ESCP25, tried the FAIMS std v low res and diff FAIMS voltages on Astral-Evosep zoom 80SPD using ionopticks Rapid 5x75 col. (DIANN2.0). CV -45V seemed to perform better for both 5ng and 250pg at precursor level. The story seemed a little different for CV-48V esp at lower 250pg conc..

(J Proteom Res) [ASAP] Understanding Data Analysis Steps in Mass-Spectrometry-Based Proteomics Is Key to Transparent Reporting: Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.5c00287 #MassSpecRSS

If you are interested in scientific software engineering or experimental work in the fields of spatial and multi-modal -omics, high throughput interaction proteomics, or mass instrumentation, apply until Oct 7th! @mannlab.bsky.social www.biochem.mpg.de/mann imprs-ml.mpg.de/How-to-Apply

'...higher number of proteins identified does not necessarily mean higher depth of soluble plasma proteome analysis...that higher number of proteins can be easily achieved in samples with background contamination, or tissue leakage due to organ failure...'

Final call: Applications close September 2! KI is recruiting 20 Assistant Professors in a wide range of subject areas. We're looking for early-career researchers with strong scientific merits and future potential. All positions: ki.se/en/about-ki/...