News in Proteomics Research blog post | Finally! A ready-to-run human plasma proteomics standard! proteomicsnews.blogs... --- #proteomics #prot-other

PhD Fellow in Spatial Proteomics of Cardiac Conduction and Disease Mechanisms | JobTeaser www.jobteaser.com/nl... --- #proteomics #prot-jobs

Multi spectral imaging at UV and IR range to mark sampling zones..and followed it up with hydrophobic ion-ion interaction to identify peptides.. old vs new peptides distinguished by monitoring of oxidation and deamidation.. sleuths at work..#paleoproteomics

🚨 Job opportunity The Proteomics Core is hiring a (Junior) Technical Support Team Member to keep its mass-spec proteomics services running smoothly. 🗓 Deadline: November 30, 2025 👉 Apply via the VIB job site https://vib.be/en/technologies/about-vib-technologies/jobs#/job-description/127269

Utrecht University is hiring: Postdoc Position in Proteomics and Immuno-Oncology

🎓 Upcoming Online Course: R/Bioconductor for Mass Spectrometry & Proteomics 📅 November 17–19, 2025 Join Dr Laurent Gatto for a hands-on course on mass spectrometry–based proteomics analysis using R and Bioconductor. 👉 Register & learn more: www.physalia-courses.org/courses-work...

Need to do some cutting edge Proteomics Differential expression? Maybe give Limpa a try! Guaranteed to rise to the occasion ...despite its name ! youtu.be/vqeOT8xcycc

Some new content at GitHub: github.com/pwilmart/pow... We have been measuring proteomes for a long time but almost never think about our data and results at the whole proteome level. We lose a lot of information when we think one protein at a time. We need to multiplex our thinking.

Are you having a LaPh? Diverse roles of Labile Phosphorylation in mammalian cells portlandpress.com/bi... --- #proteomics #prot-paper

"... if we're competitive from a price, thoughput and coverage perspective, the other technologies seem more than a bit silly. " That sums it up👍🏾

Enrichment of Cysteine S-palmitoylated peptides using Sodium Deoxycholate Acid Precipitation www.mcponline.org/ar... --- #proteomics #prot-paper

Struggling to compare Bruker timsTOF methods or extract window schemes from raw .d files? I developed a free desktop tool to solve this: timsCompare! 🚀 It automates the manual work of extracting method parameters, presenting them in a structured and comparable view. (A thread 🧵)

Postdoctoral Fellow to study host-virus responses using proteomics and mass spectrometry stilling.forskning.n... --- #proteomics #prot-jobs

Twenty-Five Years of High-Throughput Screening of Biological Samples with Mass Spectrometry: Current Platforms and Emerging Methods #AC pubs.acs.org/doi/10.1021/...

Boosting the speed and accuracy of protein quantification algorithms in mass spectrometry-based proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

PhD Position in Experimental Mass Spectrometry-Based Proteomics | JobTeaser www.jobteaser.com/fr... --- #proteomics #prot-jobs

Okay y’all. I’m at a complete loss. DIA is better on EVERYTHING on my Ultra2 except plasma digests. Neat, PC, PCA-N. DDA (pasef) works better. Coisolation FDR artifact? Anyone else see this?

PAMPA: A Software for Peptide Markers and Taxonomic Identification for ZooMS Samples in Archaeology and Paleontology pubs.acs.org/doi/abs... --- #proteomics #prot-paper

Finally, we're looking for someone to join our #MassSpec Core Facility to support all the protein/peptide MS & development needs of our research groups utilising: 🧪Protein chemistry 📈Liquid chromatography ⚛️Tandem mass spectrometry 🖥️Data analysis More at: www.cruk.manchester.ac.uk/career/mi-25...

Best practices and tools in R and Python for statistical processing and visualization of lipidomics and metabolomics data #NatCommun www.nature.com/articles/s41...

91962-Research Technician, Proteomics Core | Memorial Sloan Kettering Cancer Center careers.mskcc.org/va... --- #proteomics #prot-jobs

Exciting news - we are recruiting new Group Leaders! 🥼 We are seeking to appoint exceptional early-career scientists & clinician scientists as #GroupLeaders to develop bold, innovative, high-impact #CancerResearch programmes Full details on our website: www.cruk.manchester.ac.uk/career/new-g...

Are you using DIA mass spectrometry in proteomics? We have just put this paper online: www.biorxiv.org/content/10.1... Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs) 1/4

Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High‐Throughput PRM‐MS in an Inflammatory Bowel Disease Cohort #AngewChem onlinelibrary.wiley.com/doi/10.1002/...

‘Lipstick on a pig’: how to fight back against a peer-review bully #Nature www.nature.com/articles/d41...

Final countdown! Only 3 days to go until the YPIC Webinar #19: Transition from Academia to Start-Up. #YPIC #Proteomics #StartUpScience #ScienceCareers #AcademicToIndustry

Proteomics Webinar: DIA with FragPipe, DIA-NN, and Skyline Presenters: Eduard Sabidó and Brendan MacLean When: Tuesday, September 16, 8am (Pacific Time) Register Now ... skyline.ms/project/home... #massspec #proteomics

Taking cue from ESCP25, tried the FAIMS std v low res and diff FAIMS voltages on Astral-Evosep zoom 80SPD using ionopticks Rapid 5x75 col. (DIANN2.0). CV -45V seemed to perform better for both 5ng and 250pg at precursor level. The story seemed a little different for CV-48V esp at lower 250pg conc..

(J Proteom Res) [ASAP] Understanding Data Analysis Steps in Mass-Spectrometry-Based Proteomics Is Key to Transparent Reporting: Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.5c00287 #MassSpecRSS

If you are interested in scientific software engineering or experimental work in the fields of spatial and multi-modal -omics, high throughput interaction proteomics, or mass instrumentation, apply until Oct 7th! @mannlab.bsky.social www.biochem.mpg.de/mann imprs-ml.mpg.de/How-to-Apply

'...higher number of proteins identified does not necessarily mean higher depth of soluble plasma proteome analysis...that higher number of proteins can be easily achieved in samples with background contamination, or tissue leakage due to organ failure...'

Final call: Applications close September 2! KI is recruiting 20 Assistant Professors in a wide range of subject areas. We're looking for early-career researchers with strong scientific merits and future potential. All positions: ki.se/en/about-ki/...

🚀 Release Day Alert! The brand-new #pmultiqc service is LIVE: www.ebi.ac.uk/pride/servic... 🎉 Instantly generate QC reports for #quantms, #DIANN, #MaxQuant & @pride-ebi.bsky.social datasets. Reviewing @pride-ebi.bsky.social quality data is super easy — all powered by pmultiqc: pmultiqc.quantms.org 🔥

The article here in, very well discusses the importance of randomisation, power analysis for designing meaningful experiments..there was also a JPR perspective on block randomisation for proteomics experiments..together make a nice primer.. pubs.acs.org/doi/10.1021/...

Public CPTAC Meeting dctd.cancer.gov/abou... --- #proteomics #prot-conf

Looking for proteomics researchers who want to make a broader impact! Join the US HUPO Education & Outreach Committee to help shape how our field teaches, connects, and grows. Apply by September: tinyurl.com/ys67uvs4 #Proteomics #USHUPO #SciComm

Discovery and validation of biomarkers for Parkinson’s disease from human cerebrospinal fluid using mass spectrometry-based proteomics analysis #EBioMedicine #MassSpec www.thelancet.com/journals/ebi...

Great opportunity to pursue labs doing spatial proteomics, allosteric proteomics, proteome dynamics, protein ubiquitinylation, neurodegenerative proteomics..

Excited to share a new preprint from the lab. We show that PTMs like phosphorylation & glycosylation dynamically reshape proteome-wide ligandability in cells, including proteins like KRAS. Great collaboration with the Huang Lab, @forlilab.bsky.social and BMS. www.biorxiv.org/content/10.1...

#TeamMassSpec Curious on the average recovery observed across labs for SP3 sample prep.. seeing about ~50-60% of input (cell lyates by BCA pep est.) and found the following from recent literature (on FFPE). pubs.acs.org/doi/10.1021/... doi.org/10.1016/j.mc...

New preprint! Deep proteome profiling for just $10/sample, all-in. → Single-step prep for ≤50 ng → 6k–8k proteins in ~10 min → No gain from more sample/time Congrats to Siqi Huang, Chao Wang & Hsien-Jung Lin! www.biorxiv.org/content/10.1...

🤩 JOB ALERT 🤩 Come work with me and two cutting-edge LC-MS/MS systems at our brand new Mass Spectrometry Facility @iimcb.bsky.social in Warsaw! Apply here tinyurl.com/y47mzafa or send any questions my way. #TeamMassSpec please share widely!

"..Despite these advancements, most high-level deep proteomic reports are based on the Orbitrap Astral and Orbitrap Exploris 480, and analytical systems using timsTOF MS still require improvement." And the answer is 100min? Also curious what is py-diaAiD PASEF🤔

Very promising news on the next seven-year EU budget, with a proposed substantial increase for Horizon Europe including the ERC. We are analysing the other parts of this proposal in more detail. @Vonderleyen @EZaharievaEU research-and-innovation.ec.europa.eu/news/all-res...

It appears the Tenzer lab was well ahead of the curve with this with their platform: pubs.acs.org/doi/10.1021/... This was the solution I found to be most useful.

Evaluation of the False Discovery Rate in Library-Free Search by DIA-NN Using In Vitro Human Proteome pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Apply today and be part of inspiring science! Deadline July 23rd! #Proteomics #Postdocs

MaxQuant Summer School: July 21–25, 2025 at Utrecht University - NVMS www.nvms.nl/index.ph... --- #proteomics #prot-conf

▶️▶️ To all mass spec enthusiasts: A postdoc position (three years) is available in our international group. Please apply if you are interested in structural MS and in developing novel cross-link ing MS workflows!🧪 Thanks @diegofgar.bsky.social for sharing! #teammassspec #AcademicSky #ChemSky

Many of you (say, about one million) have used my buffer site to calculate thermodynamically correct buffers. Well, today, I upgraded the site with added security, becuase it was stopping soem people connecting. Should all be fine now. https rather than http. Enjoy! phbuffers.org/BuffferCalc/...