timsCompare v1.3 has a few new functionalities: - a new report wizard that allows batch exports and comparison reports - segment comparison mode - session management to revisit a comparison later without the raw data - "remove all" button - better AIP support - better UI scaling for smaller displays

I just pushed an update to the timsCompare GitHub. - compiled with Nuitka preventing false-flagging by AV software - startup parameters can now be customized - plots can now be resized to the measured mass range - extraction of used instrument and used timsControl version github.com/kronigert/ti...

Struggling to compare Bruker timsTOF methods or extract window schemes from raw .d files? I developed a free desktop tool to solve this: timsCompare! 🚀 It automates the manual work of extracting method parameters, presenting them in a structured and comparable view. (A thread 🧵)

If you're not attending ASMS but are interested in updates from Bruker, you can still take part in the eXceed symposia via livestream. Register here to join the livestream: www.bruker.com/en/landingpa... #ASMS2025 #Bruker #MassSpectrometry #eXceedSymposia

Job alert 🧪 ‼️ Hi #teammassspec: In our #RTG2467 @unihalle.bsky.social we have a job opening for a PhD student in my group! 🎉 If you want to do cool stuff in cross-linking mass spectrometry of the tumor suppressor p53, please take a look: personal.verwaltung.uni-halle.de/jobs/wissmi/ Please RT!

🧪If you join our lab you will be able to use our three timsTOF mass spectrometers….and we also got a new microwave oven for our lab kitchen today!😜 #ChemSky #AcademicSky

🚀 Robust and high sensitivity #proteomics: Our Nature protocol demystifies #PASEF workflows and provides ready-to-use dia-PASEF & synchro-PASEF methods. Find out how to achieve 7,000 protein groups or 29,000 phosphosites in 21min. Let's explore! #TeamMassSpec #Bruker doi.org/10.1038/s415... 1/🧵

TimsTOF ultra 2 cookies for the group.🍪😋🎄🎄🎄 #teammassspec @brukercorporation.bsky.social

Just got my TimsTof Ultra cookie form 😏 a nice touch from #bruker

@brukercorporation.bsky.social‘s latest app note highlights that ultra-high-throughput proteomics doesn’t have to compromise depth or quality. Pairing a timsTOF HT with an Aurora Rapid 5x75 column, researchers ID over 7,200 protein groups & 85,658 precursors in 5 mins. Read: bit.ly/3YWZk27

#teamMassSpec here is a starting pack in case you just moved over, or in case you've been absent for a while. This is #proteomics or #massspec related. The pack is not comprehensive but it's a start. go.bsky.app/HH7kqEh

Hi #TeamMassSpec, 👋 good to see everyone on 🦋 side. I am still looking for a PhD-level immunopeptidomics intern for summer 2025 with expected graduation by summer 2026. If you know of any good labs to check with, please let me know! Bruker timsTOF experience is a big plus.

diaTracer enables spectrum-centric analysis of diaPASEF proteomics data www.biorxiv.org/cont... --- #proteomics #prot-preprint

Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF - Nature Communications www.nature.com/artic... --- #proteomics #prot-paper

Ultra-sensitive metaproteomics (uMetaP) redefines the dark field of metaproteome, enables single-bacterium resolution, and discovers hidden functions in the gut microbiome www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | THUNDER-PASEF - Get those real immunopeptides! proteomicsnews.blogs... --- #proteomics #prot-other

News in Proteomics Research blog post | Need more surfactants for proteomics? Here is a big table! proteomicsnews.blogs... --- #proteomics #prot-other

Nice to see more tutorial videos out there . m.youtube.com/watch?v=_Om1...

Comprehensive Overview of Bottom-up Proteomics using Mass Spectrometry arxiv.org/abs/2311.0... --- #proteomics #prot-preprint

JOB ALERT! We are looking for technical support in our lab! Permanent position! No BS time-limited contracts! Have a look and apply! stellenangebote.uni-marburg.de/jobposting/e... #marburg #germany #proteomics #laboratory

Our new preprint optimising search parameters in DIA is out. We show DIA can suffer effects similar to match-between runs in DDA, with false positives being detected across runs. But we offer simple solution that dramatically reduces them while maintaining proteome depth. #proteomics

Are you interested in the Bruker timsTOF Ultra? Then I am happy to inform you that the Webinar with our Application Development Specialist Christoph Krisp about “Setting and maintaining the single cell proteomics benchmark” is now available on-demand: www.bruker.com/de/news-and-...