Enhancing Proteoform Sequence Coverage Using Top-Down Mass Spectrometry with In-Source Fragmentation and Middle-Down Mass Spectrometry www.biorxiv.org/cont... --- #proteomics #prot-preprint

What does a language model know about proteins? www.nature.com/artic... --- #proteomics #prot-paper

InterPLM: discovering interpretable features in protein language models via sparse autoencoders www.nature.com/artic... --- #proteomics #prot-paper

TileDVP: Decoding the Tissue Proteome from H&E Images link.springer.com/ch... --- #proteomics #prot-paper

Blood proteomics for quantitative biomarkers of cellular therapies - Biomarker Research biomarkerres.biomedc... --- #proteomics #prot-paper

Uncovering hidden protein modifications with native top-down mass spectrometry www.nature.com/artic... --- #proteomics #prot-paper

Chasing the Ghost Proteome in the Dark matter www.sciencedirect.co... --- #proteomics #prot-paper

TMTCrunch: A Proteomic Atlas of Alternative Splicing for Predicting Splicing-Induced Implications in Aging and Alzheimer’s Disease pubs.acs.org/doi/10.... --- #proteomics #prot-paper

De novo peptide sequencing rescoring and FDR estimation with Winnow arxiv.org/abs/2509.2... --- #proteomics #prot-preprint

Exploiting ion‐mobility mass spectrometry for unraveling proteome complexity analyticalsciencejou... --- #proteomics #prot-paper

A Flexible End-to-End Automated Sample Preparation Workflow Enables Standardized and Scalable Bottom-up Proteomics pubs.acs.org/doi/ful... --- #proteomics #prot-paper

Quantitative proteomics of formalin-fixed, paraffin-embedded cardiac specimens uncovers protein signatures of specialized regions and patient groups www.nature.com/artic... --- #proteomics #prot-paper

HEIST: A Graph Foundation Model for Spatial Transcriptomics and... arxiv.org/abs/2506.1... --- #proteomics #prot-preprint

Development and validation of a streamlined workflow for proteomic analysis of proteins and post-translational modifications from dried blood www.biorxiv.org/cont... --- #proteomics #prot-preprint

Proteomics Scientist (Assistant in Research, 12 Month Salaried - Medicine) - Tallahassee, FL careers.insidehigher... --- #proteomics #prot-jobs

A novel pairwise sequence alignment algorithm for similarity search in massive datasets academic.oup.com/bib... --- #proteomics #prot-paper

Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context www.biorxiv.org/cont... --- #proteomics #prot-preprint

Elucidating Tissue- and Plasma-Specific Proteomic Alterations in Health and Disease app.jove.com/t/67240... --- #proteomics #prot-paper

Current landscape of plasma proteomics from technical innovations to biological insights and biomarker discovery www.nature.com/artic... --- #proteomics #prot-paper

Postdoctoral Fellow Position in Proteomics and Biomarker Discovery us.headtopics.com/ne... --- #proteomics #prot-jobs

Emerging trends in chemoproteomics: Mapping the landscape of protein–metabolite interactions www.sciencedirect.co... --- #proteomics #prot-paper

BrainProt v3.0: An Integrative and Simplified Omics-Based Knowledge-Base About the Human Brain and Its Associated Diseases pubs.acs.org/doi/10.... --- #proteomics #prot-paper

News in Proteomics Research blog post | Metabolic labeling in single cell proteomics dissects protein regulation! proteomicsnews.blogs... --- #proteomics #prot-other

RAPDOR: Using Jensen-Shannon Distance for the computational analysis of complex proteomics datasets www.nature.com/artic... --- #proteomics #prot-paper

New Developments in Plasma Proteomics | BioPharm International www.biopharminternat... --- #proteomics #prot-article

aMLProt: an automated machine learning library for protein applications academic.oup.com/bio... --- #proteomics #prot-paper

Retention Time Interpolation Enhances Peptide Mapping for HDX-MS pubs.acs.org/doi/10.... --- #proteomics #prot-paper

News in Proteomics Research blog post | How mass analyzer resolution changes across mass ranges - and how to monitor it! proteomicsnews.blogs... --- #proteomics #prot-other

Integrated top-down and bottom-up mass spectrometry enables precise characterization of proteoforms and their post-translational modifications within the protein corona www.researchsquare.c... --- #proteomics #prot-preprint

Predicting protein-protein interactions in the human proteome www.science.org/doi/... --- #proteomics #prot-paper

Proteomics - Latest research and news | Nature www.nature.com/subje... --- #proteomics #prot-other

91962-Research Technician, Proteomics Core | Memorial Sloan Kettering Cancer Center careers.mskcc.org/va... --- #proteomics #prot-jobs

Facilitating analysis and dissemination of proteomics data through metadata integration in MaxQuant www.nature.com/artic... --- #proteomics #prot-paper

Hunter-Dia: An updated protocol for enrichment and mass spectrometry-based identification of protein N-terminal peptides www.sciencedirect.co... --- #proteomics #prot-paper

Thesis | Missing protein identification and quantification using networks dr.ntu.edu.sg/entiti... --- #proteomics #prot-other

DEGRONOPEDIA: A practical guide to identifying and targeting protein degrons www.sciencedirect.co... --- #proteomics #prot-paper

Revealing Single-Amino Acid Recognition and Cleavage Dynamics Using Plasmonic Biosensors pubs.acs.org/doi/abs... --- #proteomics #prot-paper

Profiling of C-terminal prenylated proteins using tandem mass tagging www.sciencedirect.co... --- #proteomics #prot-paper

Full-length protein classification via cysteine fingerprinting in solid-state nanopores www.nature.com/artic... --- #proteomics #prot-paper

Linker H1 Histone Direct Top-Down Proteoform Analysis pubs.acs.org/doi/10.... --- #proteomics #prot-paper

FISH-FACS proteomics: enhanced label-free quantitative proteome analysis from low cell numbers of uncultured environmental microorganisms academic.oup.com/ism... --- #proteomics #prot-paper

Capturing the native structure of membrane proteins using vesicles | PNAS www.pnas.org/doi/abs... --- #proteomics #prot-paper

Attribute-Weighted Aggregation of Tandem Mass Reporter Ion Intensity for Protein Quantification Using Isobaric Labeling pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Mass spectrometry-based top-down proteomics for proteoform profiling of protein coronas www.nature.com/artic... --- #proteomics #prot-paper

A standardized framework for circulating blood proteomics www.nature.com/artic... --- #proteomics #prot-paper

Dosa: A method to covalently barcode proteins for high throughput biochemistry www.biorxiv.org/cont... --- #proteomics #prot-preprint

Researchers Push for Improved Standardization of Plasma Proteomic Experiments www.genomeweb.com/pr... --- #proteomics #prot-article

gapTrick — Structural characterisation of protein-protein interactions using AlphaFold academic.oup.com/bio... --- #proteomics #prot-paper

Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs) www.biorxiv.org/cont... --- #proteomics #prot-preprint

Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs) www.biorxiv.org/cont... --- #proteomics #prot-preprint