Nature of False Peptide Identifications in Data-Independent Acquisition-Based Proteome Analysis pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Comprehensive online two-dimensional nanoLCxCZE-MS for deep top-down proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

Manchester Proteome Profiler: A User-Friendly Platform for Quantitative Proteomic Analysis www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | www.proteomics.rocksS100P levels are linked to recurrence in cholangiocarcinoma proteomicsnews.blogs... --- #proteomics #prot-other

Aggregation Methods for Quantifying PTM and Structural Changes in Bottom-Up Proteomics pubs.acs.org/doi/ful... --- #proteomics #prot-paper

Researcher in leveraging plasma proteomics | JobTeaser hs-mittweida.jobteas... --- #proteomics #prot-jobs

Light-driven spatial proteomics: Photocatalytic strategies for mapping protein microenvironments www.sciencedirect.co... --- #proteomics #prot-paper

Population scale proteomics enables adaptive digital twin modelling in sepsis www.medrxiv.org/cont... --- #proteomics #prot-preprint

Development of a Xylene-Free Sample Preparation Protocol for Quantitative Proteomics of Clinically Relevant Formaldehyde-Fixed Paraffin-Embedded Needle Biopsy Samples www.biorxiv.org/cont... --- #proteomics #prot-preprint

A novel method to select Reference Proteomes in UniProt www.biorxiv.org/cont... --- #proteomics #prot-preprint

Recent Advances in Top‐Down Proteomics for Single‐Cell Research analyticalsciencejou... --- #proteomics #prot-paper

For automated pipelines: mzML conversion, composition assignment, and Skyline import can be chained in a single command. Inspired by the proteomics world, Docker container support makes it straightforward to deploy as a step in any existing bioinformatic pipeline (gif related).

GlyComboCLI enables command line-based FAIR workflows for glycan composition assignment in mass spectrometry data www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | Taxonomy source identification from proteomics of hair! proteomicsnews.blogs... --- #proteomics #prot-other

eMZed 3: flexible and interactive development of scalable LC-MS/MS... arxiv.org/abs/2510.2... --- #proteomics #prot-preprint

De novo protein discovery in non-model organisms www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | More ultrafast proteomics with thermolysin! proteomicsnews.blogs... --- #proteomics #prot-other

Illuminating the Dark Host Cell Proteome: A host cell protein coverage method for LC-MS impurity assays www.sciencedirect.co... --- #proteomics #prot-paper

Mass spectrometry-based single-cell proteomics technologies, trends, and biological insights www.cell.com/trends/... --- #proteomics #prot-paper

Topological Data Analysis of Spatial Protein Expression in Multiplexed Spatial Proteomics Studies www.biorxiv.org/cont... --- #proteomics #prot-preprint

The Spatiotemporal Proteome Landscape of Aging: Structural determinants of age-sensitive proteome remodeling www.biorxiv.org/cont... --- #proteomics #prot-preprint

Tracking Protein Misfolding and Oligomerization: A Temperature-Controlled Ion Mobility-Mass Spectrometry Approach pubs.acs.org/doi/10.... --- #proteomics #prot-paper

WasteFams: A database of protein families from global wastewater microbiomes www.biorxiv.org/cont... --- #proteomics #prot-preprint

Non-covalent reversibly photoconvertible fluorescent tags for wash-free protein labeling www.biorxiv.org/cont... --- #proteomics #prot-preprint

ProCAST: A Bioinformatics Suite for Mass Spectrometry-Based Protein Corona Proteomics Analysis www.biorxiv.org/cont... --- #proteomics #prot-preprint

OpenIMC: an open-source platform for analyzing single-cell and spatial proteomics by imaging mass cytometry www.researchsquare.c... --- #proteomics #prot-preprint

Applications of Top‐Down Protein Analysis in Clinical Diagnostics analyticalsciencejou... --- #proteomics #prot-paper

Analyses of Individual Singly Charged Ions Using a High-Field Orbitrap Analyzer pubs.acs.org/doi/10.... --- #proteomics #prot-paper

News in Proteomics Research blog post | TIMSTOF Ultra2 after 1 year - still incredible when it works! proteomicsnews.blogs... --- #proteomics #prot-other

ProteinFlux: accurate, rapid and scalable generative prediction of protein dynamics driven by post-translational modifications www.biorxiv.org/cont... --- #proteomics #prot-preprint

Triplet tumbling microscopy enables in situ quantification of protein complex assembly and dynamics www.biorxiv.org/cont... --- #proteomics #prot-preprint

Stoichiometry-dependent specificity in biotin enrichment: a benchmarking framework for proximity labeling proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

Facility-Scale Workflows for Data Acquisition, Standardization, Machine Learning Analysis, and Reproducible Science www.biorxiv.org/cont... --- #proteomics #prot-preprint

Reduction-Free Thermolysin Digestion Enables Absolute Protein Quantitation in Plasma in 35 min from Sample to Result pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Dissecting non-small cell lung cancer (NSCLC) with blood proteomics—from surgical to immunotherapeutic responses www.nature.com/artic... --- #proteomics #prot-paper

iMPI: An Integrative Database for MicroProteins Encoded by Intron Retention in Tumors analyticalsciencejou... --- #proteomics #prot-paper

Enzyme-activated Proximity of Oligonucleotides Sensing (EPOS), for precise monitoring of protein interactions www.researchsquare.c... --- #proteomics #prot-preprint

PEARL: Integrative multi-omics classification and omics feature discovery via deep graph learning academic.oup.com/bio... --- #proteomics #prot-paper

LAMPrEY: a Python-based automated quality control tool for large-scale proteomics datasets www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | Single cell metabolomics (by infusion??) with Medusa! proteomicsnews.blogs... --- #proteomics #prot-other

Extending Serum IgG1 Antibody Repertoire Coverage Using DIA-PTCR pubs.acs.org/doi/10.... --- #proteomics #prot-paper

SILAC-based discovery of a broad range of proteins that can be posttranslationally glutamylated or glycylated journals.biologists.... --- #proteomics #prot-paper

Remember, once in a Blue Moon, to visit Pastel BioScience's resource pages ... https://t.ly/EP3hr to see updated list of new #proteomics software packages (153) in 2025 &, https://t.ly/Mlk39#proteomicsfor Conferences/Symposia/Webinars etc (11) already available in 2026 --- #proteomics #prot-other

Looks like I didn't post this one when it first came out ... Proteomics—The State of the Field: The Definition and Analysis of Proteomes Should Be Based in Reality, Not Convenience | MDPI www.mdpi.com/2227-73... --- #proteomics #prot-paper

We’re looking for a highly motivated and passionate Metaproteomics / Proteomics LC–MS Specialist to deliver high-throughput, high-sensitivity metaproteomics and proteomics using next-generation LC–MS/MS technologies. 💷 £37,500 to £45,350 🗓️ Apply by 7 June 2026 ➡️ buff.ly/wwAUgXX

PPI-Net connects molecular protein interactions to functional... arxiv.org/abs/2605.0... --- #proteomics #prot-preprint

LIVIA: a browser-based tool for assessing and visualizing predicted protein interactions www.biorxiv.org/cont... --- #proteomics #prot-preprint

Fabrication of trypsin-immobilized metal-organic framework-polymer monolithic spin column through a facile biomineralization strategy for efficient proteome digestion www.sciencedirect.co... --- #proteomics #prot-paper

News in Proteomics Research blog post | This week's podcast on SNOT with Dr. Jennifer Mulligan is way cooler than you'd guess! proteomicsnews.blogs... --- #proteomics #prot-other

Recent Advances (2023–2025) of Capillary Electrophoresis‐Mass Spectrometry (CE‐MS) for Top‐Down Proteomics analyticalsciencejou... --- #proteomics #prot-paper