Reduction-Alkylation Proteome Profiling (RAPP): A novel strategy for proteome-wide target identification www.sciencedirect.co... --- #proteomics #prot-paper

A dataset supporting Combinatorial Proteome Integral Solubility/Stability Alteration Analysis (CoPISA) www.nature.com/artic... --- #proteomics #prot-paper

ProteoDUDes: Taxonomic profiling for metaproteomics with false positive reduction www.biorxiv.org/cont... --- #proteomics #prot-preprint

Protein Aggregation Capture for Top-down Proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

AART enables fast and accurate cross-platform proteomic translation www.biorxiv.org/cont... --- #proteomics #prot-preprint

Thesis | Bridging the gap - Proteomics as a complementary tool in forensics pure.uva.nl/ws/files... --- #proteomics #prot-other

Plasma Proteomics Linking Primary and Secondary diseases: Insights into Molecular Mediation from UK Biobank Data www.medrxiv.org/cont... --- #proteomics #prot-preprint

A High-Quality Acetylation Dataset Reveals Modest Data Requirements for Transfer Learning to Identify Little Studied Post-Translational Modifications www.biorxiv.org/cont... --- #proteomics #prot-preprint

GLACIER: Rethinking Mass Spectrum Prediction as an Object Detection Problem arxiv.org/abs/2606.2... --- #proteomics #prot-preprint

False discovery rate control for trustworthy AI-based de novo peptide sequencing www.biorxiv.org/cont... --- #proteomics #prot-preprint

Incorporating Surfaced-Induced Dissociation Mass Spectrometry Data into an AlphaFold-derived deep learning network improves protein structure prediction www.biorxiv.org/cont... --- #proteomics #prot-preprint

AutoPELSA: An Automated Sample Preparation System for Proteome-Wide Identification of Target Proteins of Diverse Ligands pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Single-Molecule Fingerprinting of Unlabeled Full-Length Proteins Using an Aerolysin Nanopore pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Not sure how useful this may be but .... The Nonsense Dependence Index: A Rank-Based Diagnostic for Identifying Potentially Spurious Associations www.researchsquare.c... --- #proteomics #prot-preprint

MassSpectrum Analyzer: An interactive platform for proteomic searching parameter refinement and peptide modification focused re-scoring www.biorxiv.org/cont... Link in paper to Github should read .... github.com/Kristian-... --- #proteomics #prot-preprint

Mass Spectrometry Insights Into Post‐Translational Modifications in Extracellular Vesicles analyticalsciencejou... --- #proteomics #prot-paper

News in Proteomics Research blog post | DigestedProteinDB - Handy new proteomics tools to ID weird peptides! proteomicsnews.blogs... --- #proteomics #prot-other

Depletion-Free Automated Enrichment of Serum Glycopeptides for High-Throughput Clinical Glycoproteomics www.mcponline.org/ar... --- #proteomics #prot-paper

Evaluation of TIMS-derived peptide mobility measurements: calibration strategy and MS1/MS2 discrepancies link.springer.com/ar... --- #proteomics #prot-paper

Optimized Digestion Conditions for Membrane Protein Footprinting and Mass Spectrometry Analysis | MDPI www.mdpi.com/2077-03... --- #proteomics #prot-paper

Digital Human Proteome Map Opens New Pathways for Cancer Therapy www.emjreviews.com/i... --- #proteomics #prot-article

News in Proteomics Research blog post | Corona! A new open source virtual mass spectrometer! proteomicsnews.blogs... --- #proteomics #prot-other

As usually, the Single-Cell Proteomics Conference aims to maximize accessibility. Thus, #SCP2026 will enable virtual attendance via Zoom. It's free but requires registration at single-cell.net Only presentations by speakers who consent to Zoom broadcast will be included in the virtual program.

20th Central and Eastern European Proteomic Conference 20ceepc.com/wp-conte... --- #proteomics #prot-other

News in Proteomics Research blog post | TMT on an Astral - quan isn't as good but coverage is high enough to reveal new off-target effects! proteomicsnews.blogs... --- #proteomics #prot-other

A Unified Mass Spectrometry Workflow Integrating Bottom-Up and Native Top-Down Proteomics via Nanodroplet Enzymatic Digestion pubs.acs.org/doi/10.... --- #proteomics #prot-paper

DiaReport: Reproducible workflow for differential expression analysis and interactive reporting in DIA-based proteomics academic.oup.com/bio... --- #proteomics #prot-paper

AutoBlot: deterministic single-cell western blotting reveals proteomic diversity in rare cell populations www.biorxiv.org/cont... Github link doesn't appear to be available :-( --- #proteomics #prot-preprint

A Parallel Accumulation-Mobility Aligned Fragmentation Strategy Utilizing High-Resolution Ion Mobility for High Performance Proteomics Analysis www.sciencedirect.co... --- #proteomics #prot-paper

Limited impact of column chemistry and length on proteome coverage under high-speed DIA www.mcponline.org/ar... --- #proteomics #prot-paper

Deep intact proteoform quantification of low-microgram-scale proteome by tandem mass tag labeling and online 2D high-pH/low-pH RPLC top-down analysis www.sciencedirect.co... --- #proteomics #prot-paper

Thesis - Computational Methods for Four-Dimensional diaPASEF Proteomics Data Analysis | backend.production.d... --- #proteomics #prot-other

Native CZE-MS analysis of antibodies and hemoglobin using protein-adapted CZE and ESI conditions for detailed proteoform characterization link.springer.com/ar... --- #proteomics #prot-paper

EasySCP unveils extensive liver zonation at single-cell proteomics resolution www.nature.com/artic... --- #proteomics #prot-paper

Frontiers | A proteome-wide atlas of humoral immunity to Mycobacterium tuberculosis across the spectrum of disease www.frontiersin.org/... --- #proteomics #prot-paper

Advances in the Design and Functionality of a Compact Multi-Reflecting Time-of-Flight Mass Spectrometer www.biorxiv.org/cont... --- #proteomics #prot-preprint

The Ascent of Miniproteins pubs.acs.org/doi/10.... --- #proteomics #prot-paper

MPOInt: An Epigenetics-Driven Workflow for Integrative Multi-Level Proteomics pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Sample preparation for mass spectrometry-based tissue (phospho)proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

Matrix-assisted laser desorption/ionization imaging mass spectrometry www.nature.com/artic... --- #proteomics #prot-paper

MDInteractions: A Python package for the distance-based analysis of intra- and inter-protein interactions www.researchsquare.c... --- #proteomics #prot-preprint

Q-DOAS: A Proximity Quenching Assay for Real-Time Detection of Early Protein Aggregation Events www.biorxiv.org/cont... --- #proteomics #prot-preprint

Corona: A Virtual Mass Spectrometer for the Development of Real-Time Mass Spectrometry Software pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Spatial distribution of the proteome in the human body and in cancers www.nature.com/artic... --- #proteomics #prot-paper

A DIA-based quantitative crosslinking mass spectrometry framework for dynamic structural proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

The Single Cell Proteomic blueprint, navigating instrumentation platforms, software tools and high-load libraries in neutrophils, RKO and A549 cells www.biorxiv.org/cont... --- #proteomics #prot-preprint

A comprehensive landscape of human organ N-glycoproteome www.nature.com/artic... --- #proteomics #prot-paper

Protocol to study direct (de)phosphorylation events on a proteome-wide scale using on-bead in vitro enzyme assays www.cell.com/star-pr... --- #proteomics #prot-paper

Centrifugal microfluidic automation of the protein aggregation capture workflow for robust mass spectrometry-based proteomics pubs.rsc.org/en/cont... --- #proteomics #prot-paper

MetaPilot: genome-aware adaptive search-space refinement for unified DDA and DIA metaproteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint