Rapid Antibody Structural Characterization and Quantification via Microdroplet Trypsin Digestion pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Surfactant-Modified Magnetic Nanoparticles Enable Efficient and Cost-Effective Plasma Proteomics for Enhanced Biomarker Discovery pubs.acs.org/doi/abs... --- #proteomics #prot-paper

Is Protein Quantification and Physical Normalization Always Necessary in Proteomics? www.biorxiv.org/cont... --- #proteomics #prot-preprint

Exploring Disordered Regions of Human Spliceosome Proteins pubs.acs.org/doi/10.... --- #proteomics #prot-paper

TCEP‐Mediated Protein Hydrolysis: Highly Selective Cleavage C‐Terminal to Aspartic Acid analyticalsciencejou... --- #proteomics #prot-paper

Advancing DIA-Based Limited Proteolysis Workflows: Introducing DIA-LiPA pubs.acs.org/doi/10.... --- #proteomics #prot-paper

ChatDIA: A zero-shot large language model workflow for targeted analysis of data-independent acquisition mass spectrometry data www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | Thermo has embraced Windows 11 on a bunch of software! proteomicsnews.blogs... --- #proteomics #prot-other

PSLite Online: A Portable, Modern Web Application to Analyze Top‐Down Mass Spectrometry Fragmentation Data analyticalsciencejou... --- #proteomics #prot-paper

DEprot: a comprehensive R-package for the analysis of label-free quantitation mass spectrometry data academic.oup.com/nar... --- #proteomics #prot-paper

A Parallel Accumulation-Mobility Aligned Fragmentation Strategy Utilizing High-Resolution Ion Mobility for High Performance Proteomics Analysis www.biorxiv.org/cont... --- #proteomics #prot-preprint

DIA-CLIP: a universal representation learning framework for zero-shot DIA proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

Proteomics bioinformatics by EMBL-EBI Training is the course for you if you want to discover: - Mass spectrometry - Quantitative proteomics - Data acquisition approaches - Proteogenomics - @emblebi.bsky.social resources: IntAct, PRIDE, and UniProt Apply by 15 March: www.ebi.ac.uk/training/eve...

Surfactant-Modified Magnetic Nanoparticles Enable Efficient and Cost-Effective Plasma Proteomics for Enhanced Biomarker Discovery pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Rapid Generation of Tandem Mass Spectrometry Reference Libraries Using Immediate Drop-on-Demand Liquid Handling Coupled to an Open Port Sampling Interface pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Statistical Analysis of Photon-Activated Chimeric Tandem Mass Spectra pubs.acs.org/doi/10.... --- #proteomics #prot-paper

On the Utility of Infrared Photoactivation for Native Top-Down and Complex-Down Orbitrap Mass Spectrometry of Soluble Proteoform Complexes pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Improving Protein Structure Prediction Using Integrative Cryo-EM and Ion Mobility Mass Spectrometry Modeling www.biorxiv.org/cont... --- #proteomics #prot-preprint

My lab at the JIC is recruiting 3 PDRA: 🔹 Bioinformatics / AI 🔹 Molecular Biology / Genetics 🔹 Proteomics Programme funded by the Novo Nordisk Foundation. 📅 Closing date: 27 February Apply via JIC website: www.jic.ac.uk/vacancies/ Please share with outstanding candidates. 🙏

A pilot study for whole proteome tagging in C. elegans www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | A protein organ specificity atlas based on PROTEIN DATA! proteomicsnews.blogs... --- #proteomics #prot-other

We are starting a series highlighting our Early Career Researchers, keep an eye as we share the stories of the up and coming proteomics researchers in the UK and Ireland.

Basic Proteomics is happening today and tomorrow at the VIB Proteomics Core in Ghent! Two hands-on days covering the full MS-based workflow: experimental design, sample prep (incl. S-trap), LC-MS/MS, and intro data analysis. Kudos to the trainer team for sharing their expertise! 🙌

Sensitive detection of cancer antigens enabled by user-defined peptide libraries www.nature.com/artic... --- #proteomics #prot-paper

XL-MSDigger: a deep learning-based, versatile solution for cross-linking mass spectrometry www.nature.com/artic... --- #proteomics #prot-paper

News in Proteomics Research blog post | NanoPots + TMTPro 32 >600 tiny single cell proteomes/day! proteomicsnews.blogs... --- #proteomics #prot-other

ProteoformDB: an integrative database for functional roles of proteoforms academic.oup.com/dat... --- #proteomics #prot-paper

Last 2 weeks to submit your abstract for Swiss Proteomics Meeting 2026! 📅 23–24 Apr 2026 | Bern Talks by Anne-Ruxandra Carvunis (ETH Zurich) and Jesper Olsen (Univ. of Copenhagen). Abstracts due 22 Feb More info: buff.ly/xyQYBzd...

Plasma Proteome Profiling of Centenarian Across Switzerland Reveals Key Youth‐Associated Proteins onlinelibrary.wiley.... --- #proteomics #prot-paper

Integrating Spatial Proteogenomics in Cancer Research advanced.onlinelibra... --- #proteomics #prot-paper

Above-Filter Digestion Proteomics Reveals Drug Targets and Localizes Ligand Binding Site pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Decoding the Post-translational Modification Crosstalk: Functional Implications of Phosphorylation, Acetylation, and Methylation pubs.acs.org/doi/10.... --- #proteomics #prot-paper

SIP-BERT: A multi-organism deep strategy for predicting self interaction in proteins www.biorxiv.org/cont... --- #proteomics #prot-preprint

Complete Data Analysis Workflow for Quantitative DIA Mass Spectrometry Using Nextflow pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Max Planck Team Aims to Develop Clinical Classifiers Directly From Discovery Proteomics Data www.genomeweb.com/pr... --- #proteomics #prot-article

Privacy-preserving multicenter differential protein abundance analysis with FedProt www.nature.com/artic... --- #proteomics #prot-paper

Spatial Proteomics Workshop for Protists (see more in thread below) Registration Early Bird Monday 22nd June 2026. Regular Monday 10th August 2026. There will be a conference dinner on day 1. To register visit protistology.org.uk/autumn-meeti...

PTMOverlay: A Proteomic Tool to Visualize Post-Translational Modifications Across Evolution www.biorxiv.org/cont... --- #proteomics #prot-preprint

Regarding Emitter Positioning for Nanoflow Electrospray Ionization with a High-Capacity Inlet Capillary pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Unlocking the complexity of macromolecular protein heterogeneity of glycoprotein IgE via an optimized online digestion middle-down proteomics approach www.sciencedirect.co... --- #proteomics #prot-paper

Proteomic atlas of human peritoneal tissue www.nature.com/artic... --- #proteomics #prot-paper

Bootstrap resampling of mass spectral pairs with SpecReBoot reveals hidden molecular relationships www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | Poor RNA to protein correlations are an artifact of poor proteomics data? proteomicsnews.blogs... --- #proteomics #prot-other

A fully automated high-throughput system for simultaneously enriching and separating intact glycopeptides www.sciencedirect.co... --- #proteomics #prot-paper

DIA-MS based plasma peptidomic workflow for profiling organ-derived peptides www.biorxiv.org/cont... --- #proteomics #prot-preprint

News in Proteomics Research blog post | Acceleromater correlations to the UK Biobank proteome data! proteomicsnews.blogs... --- #proteomics #prot-other

Quantifying the ∼75–95% of Peptides in DIA-MS Data Sets that Were Not Previously Quantified pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Mapping Native Peptide–Peptide Noncovalent Interactions: Insights from Trapped Ion Mobility Spectrometry, Electron- and UV-Fragmentation, Tandem Mass Spectrometry, and Molecular Dynamics pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Extending Calibration Anchors Resolves Low-m/z Shifts in Negative-Mode Orbitrap Workflows pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Recent advances in proximity labeling-based subcellular proteomic mapping www.sciencedirect.co... --- #proteomics #prot-paper