Jeffrey Perkel (he/him)
@jperkel.bsky.social
📤 5803
📥 1225
📝 443
Technology Editor at Nature magazine (
@nature.com
)
#rstats
#scicomm
. Love is love. 💕
reposted by
Jeffrey Perkel (he/him)
Bethany Brookshire
about 7 hours ago
People always used to tell me that freelancing is "feast or famine" It's not. It's fucking around and finding out.
brookshire-team-trash.beehiiv.com/p/feast-and-...
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Feast and Famine: Or FAFO
Feast, you see, implies joy. And famine implies misery.
https://brookshire-team-trash.beehiiv.com/p/feast-and-famine-or-fafo
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Jeffrey Perkel (he/him)
𝕊𝕦𝕟𝕕𝕒𝕖 𝔾𝕦𝕣𝕝
about 7 hours ago
Expressing unpopular political opinions over Thanksgiving dinner with MAGA relatives can dramatically slash your gift-giving budget this Christmas. Follow me for more money-saving tips and tricks.
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Here's a fun column! Carsten Lund Pedersen uses
#AI
to create a kind of career advisory panel. Panelists include digital simulacra of Einstein, Bohr, Feynman, and on one memorable occasion, Bond author Ian Fleming. Here's how he did it.
@nature.com
🧪
www.nature.com/articles/d41...
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I have Einstein, Bohr and Feynman in my pocket
Grappling with difficulties in your career? Try asking an AI-powered advisory panel of experts, suggests Carsten Lund Pedersen.
https://www.nature.com/articles/d41586-025-03468-9
6 days ago
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“This new class of genetically encoded sensors has really opened up this world.” New
@nature.com
, what's new in the world of genetically encoded neurochemical sensors. by
@dianakwon.bsky.social
🧪 🧠
www.nature.com/articles/d41...
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How genetically encoded sensors have lit up neuroscience
Tools that track specific molecules in neurons have enabled researchers to probe previously unexplored aspects of neurobiology — although important caveats remain.
https://www.nature.com/articles/d41586-025-03639-8
6 days ago
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Writing scientific software is time-consuming and technical. Google’s new development workflow aims to automate the process by allowing software to evolve, building on both existing tools and online resources. New
@nature.com
, by
@silverjacket.bsky.social
🧪
www.nature.com/articles/d41...
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Google AI aims to make best-in-class scientific software even better
An artificial-intelligence-guided software-evolution system tweaks tools to boost performance.
https://www.nature.com/articles/d41586-025-03289-w
25 days ago
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Read this fantastic defense of independent journalism by
@marisakabas.bsky.social
. Bravo! 👏
www.thehandbasket.co/p/grennell-c...
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Truth, morality and independence in journalism under the second Trump regime
My full remarks to students and faculty at Grinnell College.
https://www.thehandbasket.co/p/grennell-college-speech
26 days ago
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😱 Fascinating and terrifying thought experiment from
@lauriewired.bsky.social
: "The original sin of computing ... that no one can fix". TL;DR: how much can you trust your compiler?
www.youtube.com/watch?v=Fu3l...
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The Original Sin of Computing...that no one can fix
YouTube video by LaurieWired
https://www.youtube.com/watch?v=Fu3laL5VYdM
28 days ago
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reposted by
Jeffrey Perkel (he/him)
Mrs. Betty Bowers
30 days ago
America-hating Antifa showing up for a *second* time today.
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Jeffrey Perkel (he/him)
Governor JB Pritzker
30 days ago
Democracy in action, Illinois. Proud of our state for peacefully showing up and speaking out together in one voice to fight back against Donald Trump’s takeover of our democracy.
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reposted by
Jeffrey Perkel (he/him)
Mindy Weisberger
30 days ago
Meanwhile in Alabama
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reposted by
Jeffrey Perkel (he/him)
Ming Tommy Tang
about 1 month ago
12 years ago, I typed my first "Hello world!". It is not easy to learn bioinformatics from scratch. But it is possible if you put in effort and have a clear pathway. read my story here
divingintogeneticsandgenomics.com/publication...
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Fluorescent proteins are usually distinguished by their color. A new breed of FPs can be distinguished by 'fluorescence lifetime', too! Interesting read from
@sjmelchor.bsky.social
@nature.com
🧪
www.nature.com/articles/d41...
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Time-resolved fluorescent proteins expand the microscopy palette
An innovative strategy has produced light-emitting proteins that can be differentiated both by colour and by how long the molecules remain in an excited state.
https://www.nature.com/articles/d41586-025-03318-8
about 1 month ago
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“It’s a really nice, completely closed loop where the end user is also the data provider.” New
@nature.com
, a fascinating read by Heather Richardson on the rising use of 'digital twins' in
#ecology
. 🧪
www.nature.com/articles/d41...
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Digital flocks, predators allow ecologists to simulate real-world animal behaviour
‘Digital twins’ of real-world objects are moving from manufacturing to wildlife management.
https://www.nature.com/articles/d41586-025-03314-y
about 1 month ago
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'Digital twins' have been used to model everything from electronics components to UK hospital wards and even the nation of Singapore. Now, they are transforming ecology research. Heather Richardson reports
@nature.com
🧪
www.nature.com/articles/d41...
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Client Challenge
https://www.nature.com/articles/d41586-025-03314-y
about 1 month ago
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Jeffrey Perkel (he/him)
Lyz
about 1 month ago
I wrote about the Elizabeth Holmes of the media
lyz.substack.com/p/let-the-al...
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reposted by
Jeffrey Perkel (he/him)
Jen Rubin
about 1 month ago
ANTIFA:
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Jeffrey Perkel (he/him)
Governor Tim Walz
about 1 month ago
Can’t believe I have to say this, but in Minnesota you will continue to have the freedom to get your COVID and flu shots.
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about 1 month ago
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about 1 month ago
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about 2 months ago
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New
@nature.com
, by
@silverjacket.bsky.social
www.nature.com/articles/d41...
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Biothreat hunters catch dangerous DNA before it gets made
Microsoft researchers found a biological zero-day vulnerability — and created a software patch.
https://www.nature.com/articles/d41586-025-03230-1
about 2 months ago
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Important story by
@scattercushion.bsky.social
@nature.com
add a skeleton here at some point
about 2 months ago
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Jeffrey Perkel (he/him)
napari
about 2 months ago
napari 0.6.5 is out! 🚀 Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here:
napari.org/dev/release/...
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reposted by
Jeffrey Perkel (he/him)
Kendall Powell
about 2 months ago
At long last, the 2025
@nature.com
global PhD Survey is out! This first article by
@lindanordling.bsky.social
charts the state of the PhD experience in 2025. Good news: satisfaction is high. Bad news: so is harassment and discrimination.
www.nature.com/articles/d41...
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How money, politics and technology are redefining the PhD experience in 2025
Nature’s global survey of 3,785 doctoral students shows satisfaction has recovered from pandemic lows, but harassment and inadequate supervision remain widespread.
https://www.nature.com/articles/d41586-025-03149-7
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The challenge of staying up to date with the scientific literature has become a burden for everyone from students to senior investigators. New
@nature.com
, three researchers offer strategies for separating the wheat from the chaff
#phdlife
#AI
🧪
www.nature.com/articles/d41...
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How to find the papers you need to read — and avoid the ones you don’t
With thousands of papers being published everyday, it can be a task working out which matter. Here are some tips to help you decide.
https://www.nature.com/articles/d41586-025-02867-2
about 2 months ago
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Jeffrey Perkel (he/him)
Aleksandra Lazić
about 2 months ago
When's an
#RStats
movie coming to the silver screen?
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"NumPy has been a driving force for my whole life." It was a real pleasure to speak with
@numpy.bsky.social
developer Travis Oliphant about NumPy, SciPy, and
#Python
: the Documentary! New
@nature.com
🧪🐍
www.nature.com/articles/d41...
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Python, the movie! The origin story of the programming language comes to the silver screen
The creator of the NumPy and SciPy libraries reflects on their supporting role in the story of Python, now the subject of a documentary.
https://www.nature.com/articles/d41586-025-02903-1
about 2 months ago
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Jeffrey Perkel (he/him)
Olivia Guest · Ολίβια Γκεστ
2 months ago
Finally! 🤩 Our position piece: Against the Uncritical Adoption of 'AI' Technologies in Academia:
doi.org/10.5281/zeno...
We unpick the tech industry’s marketing, hype, & harm; and we argue for safeguarding higher education, critical thinking, expertise, academic freedom, & scientific integrity. 1/n
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Jeffrey Perkel (he/him)
Max Kozlov
about 2 months ago
NEW: Nature trained AI to predict which NIH grants from 2014 would have been cut if the Trump admin had its way back then — and what science would have been lost to history. "The results show the damage that cuts in funding can do to research, and the unpredictable nature of the research process."
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Jeffrey Perkel (he/him)
Jonathan Eisen
about 2 months ago
We need additional ways to fund science
www.nature.com/articles/d41...
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Will the public support basic science? A new non-profit aims to find out
The Science Foundation seeks donations to fund ten $10,000 ‘what if’ seed grants.
https://www.nature.com/articles/d41586-025-02931-x
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It was a real pleasure to speak with
@numpy.bsky.social
creator Travis Oliphant about NumPy, SciPy, and
#Python
: the Documentary! New
@nature.com
🧪🐍
www.nature.com/articles/d41...
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Python, the movie! The origin story of the programming language comes to the silver screen
The creator of the NumPy and SciPy libraries reflects on their supporting role in the story of Python, now the subject of a documentary.
https://www.nature.com/articles/d41586-025-02903-1
about 2 months ago
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reposted by
Jeffrey Perkel (he/him)
Elizabeth Warren
about 2 months ago
Let's be clear: no one should be taking medical advice from the man who told Americans to inject bleach. To moms worried about the Tylenol they took while pregnant: you deserve better than being RFK Jr's scapegoat. And to the autism community: you are loved exactly as you are.
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For decades, researchers have strained to reconstruct cellular backstories through indirect means. But these are forensic efforts at best, postmortems of a vanished process. A new generation of DNA-recording tools promises to change that. By Elie Dolgin
@nature.com
🧪
www.nature.com/articles/d41...
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Real-time molecular recorders expose the inner lives of cells
Gene-editing tools transform cells into record-keepers, capturing hidden timelines of health and disease.
https://www.nature.com/articles/d41586-025-03035-2
about 2 months ago
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Incredible work: "This is the first time
#AI
systems are able to write coherent genome-scale sequences.” Researchers at
@arcinstitute.org
use AI to design new viruses capable of infecting bacteria.
@nature.com
🧪
www.nature.com/articles/d41...
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World’s first AI-designed viruses a step towards AI-generated life
Scientists used AI to write coherent viral genomes, using them to synthesize bacteriophages capable of killing resistant strains of bacteria.
https://www.nature.com/articles/d41586-025-03055-y
about 2 months ago
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"Amid a backdrop of massive cuts in US federal support for scientific research, a new effort — the Science Foundation — launched last week to raise public funds for transdisciplinary, discovery-based research."
@virginiagewin.bsky.social
reports for
@nature.com
🧪
www.nature.com/articles/d41...
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Will the public support basic science? A new non-profit aims to find out
The Science Foundation seeks donations to fund ten $10,000 ‘what if’ seed grants.
https://www.nature.com/articles/d41586-025-02931-x
2 months ago
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reposted by
Jeffrey Perkel (he/him)
Jessica Valenti
2 months ago
I know everyone is consumed with other news, but this is a big fucking deal: The Trump administration says that IUDs and the Pill are actually abortions. Here's what USAID told the NYT about the $10m in birth control they plan to destroy.
www.nytimes.com/2025/09/11/h...
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Jeffrey Perkel (he/him)
Julia Carrie Wong
2 months ago
“Did you consider not complying with this request?” Judith Butler spoke to
@samtlevin.bsky.social
about being reported to the feds by UC Berkeley for supposed antisemitism
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UC Berkeley shares 160 names with Trump administration in ‘McCarthy era’ move
Prominent professor Judith Butler among students and faculty investigated for ‘alleged antisemitic incidents’
https://www.theguardian.com/us-news/2025/sep/12/uc-berkeley-trump-administration-antisemitism?CMP=Share_iOSApp_Other
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Through lawsuits, grant tracking, whistle-blowing and more, resistance to the US war on science is growing. Read this fantastic story by
@dangaristo.bsky.social
@maxkozlov.bsky.social
@heidiledford.bsky.social
@nature.com
! 🧪
www.nature.com/articles/d41...
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Scientists take on Trump: these researchers are fighting back
Through lawsuits, grant tracking, whistle-blowing and more, resistance to the US war on science is growing.
https://www.nature.com/articles/d41586-025-02811-4
2 months ago
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Jeffrey Perkel (he/him)
From large national databases to bespoke sample collections, biobanks offer a wealth of avenues for scientific enquiry. New
@nature.com
,
@smjyoti.bsky.social
speaks with
@ukbiobank.bsky.social
& other biobanks and users to learn how best to make use of their services
www.nature.com/articles/d41...
🧪
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Using biobanks to boost research: a how-to guide
From large national databases to bespoke sample collections, biobanks offer a wealth of avenues for scientific enquiry.
https://www.nature.com/articles/d41586-025-02813-2
2 months ago
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From large national databases to bespoke sample collections, biobanks offer a wealth of avenues for scientific enquiry. New
@nature.com
,
@smjyoti.bsky.social
speaks with
@ukbiobank.bsky.social
& other biobanks and users to learn how best to make use of their services
www.nature.com/articles/d41...
🧪
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Using biobanks to boost research: a how-to guide
From large national databases to bespoke sample collections, biobanks offer a wealth of avenues for scientific enquiry.
https://www.nature.com/articles/d41586-025-02813-2
2 months ago
0
13
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reposted by
Jeffrey Perkel (he/him)
Dan Garisto
2 months ago
Often the news happens so quickly that there's little time for it, so we took a step back to talk about the stories of the researchers who have been fighting back against the Trump administration's assault on science. w/
@maxkozlov.bsky.social
and
@heidiledford.bsky.social
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Scientists take on Trump: the researchers fighting back
Through lawsuits, grant tracking, whistle-blowing and more, resistance to the US war on science is growing.
https://www.nature.com/articles/d41586-025-02811-4
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Jeffrey Perkel (he/him)
Elizabeth Jacobs, PhD
2 months ago
RFK Jr.’s new report that claims it will make childen healthy again ignores the number one cause of death for childen in the United States: gun violence. Fellow Defend Public Health member
@brucemirken.mas.to.ap.brid.gy
talked to the LA Times about this. We didn’t ignore it in our IHAT report.
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Kennedy commission child health report ignores gun violence, the leading cause of child death
HHS Secretary Robert F. Kennedy Jr. said violence could be fault of antidepressants, social media and video games, but not guns.
https://www.latimes.com/science/story/2025-09-09/maha-child-health-report-ignores-gun-violence-the-leading-cause-of-child-death
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I always learn interesting new tricks from
@tommytang.bsky.social
— this is a good one!
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2 months ago
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Jeffrey Perkel (he/him)
Jennifer Ouellette
2 months ago
Who can get a COVID vaccine—and how? It’s complicated.
arstechnica.com/health/2025/...
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Who can get a COVID vaccine—and how? It’s complicated.
We’re working with a patchwork system, and there are a lot of gray areas.
https://arstechnica.com/health/2025/09/who-can-get-a-covid-vaccine-and-how-its-complicated/
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A perfect description of the grad school experience, by
@charliejane.bsky.social
in LESSONS IN MAGIC AND DISASTER!
2 months ago
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Jeffrey Perkel (he/him)
Starre Vartan
3 months ago
Absolutely fantastic piece by
@meredithwadman.bsky.social
on
#endometriosis
w/sobering (angering!) infographics and how this may be an autoimmune issue. ALSO: a GREAT illustration showing a menstrual cup which is a first for me to see in a magazine!):
#womenshealth
www.science.org/content/arti...
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Jeffrey Perkel (he/him)
Crystal Lewis
3 months ago
A new semester has started! And if you are kicking off a new research project and wondering, what are some things you can do to set your project up for success and ensure you collect more usable data that won't give you headaches down the road, here are some thoughts!
cghlewis.com/blog/project...
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Bare Necessities of Data Management | Crystal Lewis
An overview of data management priorities in the early phases of an education research project.
https://cghlewis.com/blog/project_beginning/
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Jeffrey Perkel (he/him)
Elizabeth Jacobs, PhD
3 months ago
It’s easier to purchase an assault rifle in the U.S. than it is to get a COVID19 vaccine. But food dyes and wearable fitness monitors are going to fix everything.
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Mammoths in Mexico! A fascinating read by
@rpocisv.bsky.social
@science.org
on the discovery and analysis of a massive Pleistocene fossil trove beneath an airport in Mexico City. 🧬 🦣 🇲🇽
www.science.org/content/arti...
🧪
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Mammoths in Mexico? Huge bone trove reveals giant beasts thrived in warmth, too
Fossils found while building airport contain first mammoth DNA from tropical location
https://www.science.org/content/article/mammoths-mexico-huge-bone-trove-reveals-giant-beasts-thrived-warmth-too
3 months ago
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