Cade Mirchandani
@cademirch.bsky.social
📤 28
📥 54
📝 7
bioinformatics phd candidate @ ucsc
https://github.com/cademirch
reposted by
Cade Mirchandani
Titus Brown
4 days ago
Preview of an important slide:
add a skeleton here at some point
1
6
1
snkmt 0.2.0 is out! New features: 1. Multi-database support - switch between dbs via ctrl+p (like VSCode) 2. Workflow filtering - hide/filter by snakefile, status, or date for cleaner navigation
github.com/cademirch/sn...
#snakemake
#bioinformatics
#workflow
#opensource
#python
#cli
#tui
loading . . .
GitHub - cademirch/snkmt: A TUI for monitoring Snakemake workflows in real-time.
A TUI for monitoring Snakemake workflows in real-time. - cademirch/snkmt
https://github.com/cademirch/snkmt
6 days ago
0
6
2
reposted by
Cade Mirchandani
Matthew Feickert
18 days ago
Recording of the tutorial now up on the
@scipyconf.bsky.social
YouTube channel:
www.youtube.com/watch?v=8AYp...
loading . . .
Arts, Feickert, & Kirkham - Reproducible Machine Learning Workflows for Scientists with pixi
YouTube video by SciPy
https://www.youtube.com/watch?v=8AYp3MlRSNA
0
4
3
reposted by
Cade Mirchandani
3 months ago
Link to the new documentation pages: -
conda-forge.org/docs/mainta...
-
conda-forge.org/docs/mainta...
loading . . .
Rust packages | conda-forge | community-driven packaging for conda
If you want to package a Rust package to conda-forge, you can use this recipe template:
https://conda-forge.org/docs/maintainer/example_recipes/rust/
0
2
1
reposted by
Cade Mirchandani
Dax Kellie
3 months ago
Some great tips on making better
#dataviz
👇 In my experience, the final point—feedback—is invaluable Funny how another person might focus on something completely different to what you intended 🙃 Adjusting from this feedback always makes for a clearer visual message📊🧪
www.nature.com/articles/s41...
loading . . .
A checklist for designing and improving the visualization of scientific data - Nature Cell Biology
Creating clear and engaging scientific figures is crucial to communicate complex data. In this Comment, I condense principles from design, visual perception and data visualization research in a checkl...
https://www.nature.com/articles/s41556-025-01684-z
1
16
7
Excited to share the
#Snakemake
monitoring tool I've been working on: snkmt (Snakemate) - a CLI utility for real-time workflow monitoring. Basically solves the "is my pipeline still running?" problem and makes debugging failed jobs much easier.
#bioinformatics
#workflow
#opensource
1/3
4 months ago
1
12
4
you reached the end!!
feeds!
log in