We wrapped up #IMMEM XIV over the weekend and it was a fantastic success with over 250 participants from 35 countries. A big thank you to the organisers and specifically @esgem-sg.bsky.social our study group on epidemiological markers! The content will be available on ESCMID media soon. #clinmicro

Sometimes you meet absolutely incredible bioinfo-magicians. It was a huge privilege when @shenwei356.bsky.social joined our group for a year on an @embl.org sabbatical. While here, he developed a new way of aligning to millions of bacteria, called LexicMap 1/n www.nature.com/articles/s41...

“The decision to close the Fleming Fund was not accompanied by an official statement or press release.” www.thelancet.com/journals/lan...

Assistant Prof post in bacterial genomics @unibirmingham.bsky.social Come and join us!! @imibirmingham.bsky.social www.jobs.ac.uk/job/DOO184/a...

Our high-precision metagenomic strain caller, PHLAME, is now published in Cell Reports!! www.cell.com/cell-reports... PHLAME works on tough sample types -- including those with coexisting strains of a species and low depth.

Very exciting work here from Sanjana Kulkarni, Maha Farhat and team. CNN prediction of MIC, v thoroughwork!!

Register today for the 14th International Meeting on Microbial Epidemiological Markers (IMMEM XIV)! Topics range from how genomics inform resistance profiling to pathogen surveillance in a #OneHealth framework. 🧬 ✍️ Register: ow.ly/gjOZ50WpOXX 👀 Programme: ow.ly/Whj850WpOXY#OneHealth #IDSky

Our paper “Global dissemination of npmA mediated pan‑aminoglycoside resistance via a mobile element in Gram‑positive bacteria” is now in @natcomms.nature.com. Part of my freshly defended PhD, so doubly happy! 😄🎉 🧵 (1/14) www.doi.org/10.1038/s414...

Researchers at @lshtm.bsky.social, led by @josebengoechea.bsky.social, will conduct a £2.2M study funded by UK MRC to investigate how Klebsiella pneumoniae silently colonises the gut before causing deadly infections. 🔬🦠 Read more 👉 bit.ly/4mNSreh

Late breaker abstracts for IMMEM conference, to be held in beautiful Portugal this September, close Friday May 23! Something for the #ABPHM25 crowd to ponder 🤔 www.escmid.org/congress-eve...

🧬Antibiograms have been used during outbreak investigations for decades as a surrogate for genetic relatedness of #MRSA 🦠Authors evaluate the accuracy of antibiograms in detecting transmission, using genomic epidemiology as the reference standard www.sciencedirect.com/science/arti...

📣Our latest paper is out now in mSystems: Not quite as it may seem - investigating #plasmid diversity and evolution in #Klebsiella pneumoniae at a single institution over time. A short thread 🧵 @zaminiqbal.bsky.social

Happy to share the findings of our latest work on mutational adaptation of Staphylococcus aureus during colonisation now published on @NatureComms rdcu.be/d55l3

Our paper investigating the mutational landscape during Staphylococcus aureus during colonisation is out now rdcu.be//d55l3 @fcic.bsky.social @sangerinstitute.bsky.social @ibv-csic.bsky.social University of Cambridge @julianparkhill.bsky.social

Three potential PhD positions are now open for applications! - MRCLID: (1) integrated with my fship - AMR prevalence by age&sex (2) long term collab. - AMR gene transfer - Nagasaki: new collaboration comparing UK&Japan AMR rates mrc-lid.lshtm.ac.uk/projects/ www.lshtm.ac.uk/study/resear...