Ali Shariati
@ali-shariati.bsky.social
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Assistant Professor of Biomolecular Engineering at UCSC shariatilab.sites.ucsc.edu
pinned post!
👋 first post here! I’m excited to start by sharing our work on CRISPRa-programmed embryo models! We show that CRISPR activation of 2 elements is sufficient to form an embryo model similar to a natural embryo
www.sciencedirect.com/science/arti...
@cp-cellstemcell.bsky.social
@ucscgenomics.bsky.social
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9 months ago
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Genomics
#postdocs
: applications are open for our Next Wave of Faculty in Genomics Symposium (due Jan 15)!. Come share your science in Santa Cruz, home of redwoods, ocean views, and the world’s most unbothered mascot:🐌🌲🌊. Link:
genomics.ucsc.edu/calendar_eve...
@baskinengineering.bsky.social
22 days ago
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Ali Shariati
Mehdi Jafarnejad
3 months ago
@alf-castello.bsky.social
& I are inviting applications for a competitive PhD studentship to study the mechanisms of translational regulation of the host response to RNA virus infections. The student will be based at Uni. Glasgow. Please spread the word.
#RNASky
www.gla.ac.uk/postgraduate...
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University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Understanding Pathogens, from Molecules to Phenotypes - Alfredo Castello
https://www.gla.ac.uk/postgraduate/doctoraltraining/northwestbio/projects/pathogens/alfredocastello/
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Ali Shariati
Together with the Rubin lab
@ucsantacruz.bsky.social
, we found a surprise: E2F1 drives cells from G0 through the full cell cycle by activating many genes without altering chromatin accessibility! Brilliant work by first author Gerrald Lodewijk, now on the faculty job market,an exceptional scientist
add a skeleton here at some point
3 months ago
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Ali Shariati
Stem Cell Reports
3 months ago
Stem Cell Reports welcomes new researchers to its Editorial Board. Their appointments reinforce the Board’s commitment to championing the journal, raising its global visibility, and ensuring rigorous, high-quality peer review. Read more:
ow.ly/YicL50X5QJF
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Together with the Rubin lab
@ucsantacruz.bsky.social
, we found a surprise: E2F1 drives cells from G0 through the full cell cycle by activating many genes without altering chromatin accessibility! Brilliant work by first author Gerrald Lodewijk, now on the faculty job market,an exceptional scientist
add a skeleton here at some point
3 months ago
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Ali Shariati
Trends in Cell Biology
4 months ago
Understanding human embryogenesis by building programmable stem cell-based models
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Understanding human embryogenesis by building programmable stem cell-based models
Stem cell-based embryo models provide an alternative system to study an elusive period of development. Programmed mouse embryo models have recently been generated by activating two endogenous regulatory elements via epigenome editing. In this forum article, we discuss this achievement along with the potential of translating it to engineering models of human embryogenesis.
http://dlvr.it/TMrgjM
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In this short article, we share our thoughts on how integrating synthetic biology tools 🛠️ into stem cell–based embryo models can improve their controllability and enhance their capabilities;
cell.com/trends/cell-...
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Understanding human embryogenesis by building programmable stem cell-based models
Stem cell-based embryo models provide an alternative system to study an elusive period of development. Programmed mouse embryo models have recently been generated by activating two endogenous regulato...
https://cell.com/trends/cell-biology/fulltext/S0962-8924(25)00179-5
4 months ago
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Hard to fully celebrate anything these days with so much happening around the world. Still, I’m grateful for the chance to support our stem cell community
@isscr.org
as a new early career editor
@stemcellreports.bsky.social
. Looking forward to receiving your stem cell manuscripts!
#stemcells
6 months ago
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Really grateful to
@bernasozen.bsky.social
and
@harrymcnamara.bsky.social
for their thoughtful preview of our CRISPRa-programmed embryo model in
@cp-cellstemcell.bsky.social
. Love the title and the insight. means a lot to us!🙏🏾
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7 months ago
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We wrote this step-by-step method to make it easier for more labs to use CRISPRa to program early embryonic development. Happy to help if you want to start with this or refine your system. Huge thanks to our coauthors and editors
link.springer.com/protocol/10....
#stemcells
#embryo
#crispr
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7 months ago
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reposted by
Ali Shariati
Baskin Engineering at UC Santa Cruz
7 months ago
[1] Expert in cell segmentation
@ali-shariati.bsky.social
said that the field of spatial transcriptomics has advanced rapidly in recent years, but accurately defining cell boundaries so that transcripts can be assigned to the correct cell with high precision has remained a key bottleneck.
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Ali Shariati
Stem Cell Podcast
9 months ago
New from Dr.
@ali-shariati.bsky.social
's lab: Dr. Gerrald Lodewijk and Sayaka Kozuki used
#CRISPR
activation to enable the self-organization of mouse ESCs into pre-gastrulation embryo models! 📃
@cp-cellstemcell.bsky.social
-
bit.ly/3QYzW8x
🎙️-
bit.ly/3R0KMuB
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Human cells differ in size by ~5 orders of magnitude! Interesting read on how surface to volume ration and diffusion determines limits of a cell's size!
www.asimov.press/p/cell-size?...
#CellBiology
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What Limits a Cell’s Size?
Two physical constraints help explain why cells are so tiny: surface area-to-volume ratios and diffusion. The first article in our new Data Series.
https://www.asimov.press/p/cell-size?r=20lu6o&utm_campaign=post&utm_medium=web&showWelcomeOnShare=false
9 months ago
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To my 12 followers: please spread the word about this exciting teaching faculty
#job
opportunity!
#AcademicChatter
#Facultyjob
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9 months ago
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reposted by
Ali Shariati
Cell Stem Cell
9 months ago
Online Now! Lodewijk et al. develop a CRISPRa-programmed embryo model using mouse pluripotent cells. By introducing controllable CRISPR activation tools into pluripotent cells, they enabled the efficient generation of a reproducible model. These tools were also used to disrupt…
#stemcells
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Self-organization of mouse embryonic stem cells into reproducible pre-gastrulation embryo models via CRISPRa programming
Lodewijk et al. develop a CRISPRa-programmed embryo model using mouse pluripotent cells. By introducing controllable CRISPR activation tools into pluripotent cells, they enabled the efficient generation of a reproducible model. These tools were also used to disrupt developmental pathways, offering a method to study mechanisms of developmental disorders.
http://dlvr.it/TJgFnL
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👋 first post here! I’m excited to start by sharing our work on CRISPRa-programmed embryo models! We show that CRISPR activation of 2 elements is sufficient to form an embryo model similar to a natural embryo
www.sciencedirect.com/science/arti...
@cp-cellstemcell.bsky.social
@ucscgenomics.bsky.social
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9 months ago
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