Mark
@mkeller7.bsky.social
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Researcher in bioinformatics working on single-cell data visualization
https://markk.co
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Chris Geidner
21 days ago
Sotomayor, joined by Kagan and Jackson, issues a 17-page dissent to the 4-page order: "[J]ust as Alabama doubled down on racial discrimination, the Court today doubles down on chaos."
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bioRxiv Bioinfo
about 1 month ago
InterScale reveals multi-scale cellular interaction programs in spatial transcriptomics
https://www.biorxiv.org/content/10.64898/2026.05.07.723456v1
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David Farrier
about 1 month ago
new zealander everlee wihongi was due to meet with her lawyer yesterday. then ICE moved her to their most notorious tent facility in texas: 3000 people, highest death rate, most sexual assaults. and today, she disappeared off the system. please RT:
www.webworm.co/everleehasdi...
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Everlee Has Disappeared
Everlee Wihongi was transferred by ICE to the notorious "Camp East Montana" at Fort Bliss, Texas. Then she disappeared.
https://www.webworm.co/everleehasdisappeared/
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BK. Titanji
about 2 months ago
The CDC is really is no where to be found because of its deliberate destruction. You CDC cruise ship inspectors were laid off in April 2025. No surprise it has been crickets from HHS and CDC leadership on the situation with the Hanta virus cruise ship situation.
www.cbsnews.com/news/cdc-cru...
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CDC's cruise ship inspectors laid off amid bad year for outbreaks
The steep cuts to the cruise ship inspection team baffled officials in the program, which is not paid for by taxpayer dollars.
https://www.cbsnews.com/news/cdc-cruise-ship-inspectors-layoffs-outbreaks-norovirus/
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context:
markk.co/blog/2026-04...
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2 months ago
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Simon Hammann
2 months ago
Don't be shy to take on a little two-week side project. These five months will be the most precious three years of your academic journey.
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Carl T. Bergstrom
3 months ago
Our PhD student Kennedy Orwa, who studies applications of AI to health care, was hastily deported today to Kenya along with his 13-year-old son without opportunity to speak to legal counsel. King 5 reports that he held a valid visa that was rescinded without explanation.
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UW graduate student deported through SEA as protesters demand answers
A union representing University of Washington graduate student workers says Kennedy Orwa’s student visa was rescinded without explanation.
https://www.king5.com/article/news/politics/immigration-news/uw-graduate-student-deported-sea-airport/281-416fdfa0-a715-4267-90f1-afe30c71b754
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Senator Ed Markey
3 months ago
Completely unstable and perilous. The House must bring up impeachment articles, and the Senate needs to remove a president who wants to commit war crimes. We cannot sit idly by as Donald Trump threatens to end an entire civilization.
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If you have ever been confused about these terms/concepts,
@dvdkouril.xyz
digs into their origins and provides a helpful survey!
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3 months ago
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allen institute
3 months ago
The Orange Cat Brain Atlas is here. 🧠🐈 Today, we published the first comprehensive cellular map of the orange cat brain. The new atlas reveals a single, specialized neuron responsible for behaviors like staring at walls, knocking objects off tables, and the 3am "zoomies."
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Harry Stevens
3 months ago
It's not just in New Albany. More than half of the gas plants being built to serve data centers will be off grid, according to data from
@globalenergymon.bsky.social
. Gift link:
www.nytimes.com/interactive/...
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Max Heiman
3 months ago
NYT feature on their website's front page about our local C. elegans colleague Will Mair and NIH funding
www.nytimes.com/2026/03/13/u...
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His Harvard Lab Was Thriving. Then Came the Cuts.
https://www.nytimes.com/2026/03/13/us/his-harvard-lab-was-thriving-then-came-the-cuts.html?unlocked_article_code=1.S1A.ZLCT.hWWgFzsI_PLE&smid=url-share
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Observable
4 months ago
When D3 was released in February 2011, it transformed how we build data visualizations for the web and ushered in a new age of unbridled creativity in information design, data journalism, and beyond. Today, it remains the backbone of modern, interactive data viz. Happy 15th birthday, D3 🎂
d3js.org
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No context side project 👀
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4 months ago
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Senator Chris Van Hollen
4 months ago
DHS is holding a 2-month-old BABY at a detention facility in Texas. Last night, Juan Nicolás was rushed to the hospital after choking on his own vomit & being unable to breathe. This demands accountability — not a blank check for more cruelty.
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CNN
4 months ago
The FDA has refused to accept an application from Moderna to review its first mRNA seasonal flu vaccine, the company said, in another setback for the technology that’s been a target of some Trump administration health officials.
https://cnn.it/4kt8iyn
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Bluesky
4 months ago
v1.116 is rolling out now! For all the overthinkers and perfectionists out there, we're launching Drafts.
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Aaron Reichlin-Melnick
4 months ago
ICE has now spent over half a BILLION dollars just on purchasing warehouses around the country to convert into detention camps. If these mega-camps are utilized to the full capacity ICE intends, they'll be the largest prisons in the country, with little real oversight.
www.ajc.com/politics/202...
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ICE to begin detaining immigrants inside Social Circle warehouse in April
Homeland Security plans to build warehouse detention facilities in other cities being met with opposition.
https://www.ajc.com/politics/2026/02/ice-to-begin-detaining-immigrants-inside-social-circle-warehouse-in-april/
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MPR News
5 months ago
A man taken into custody in Rochester Thursday by federal immigration agents and now held at the Whipple Federal Building in the Twin Cities is a recent organ transplant recipient who is without his needed anti-rejection medication, state Rep. Kim Hicks tells MPR News.
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Transplant recipient arrested by federal agents in Rochester needs medicine, state representative says
State Rep. Kim Hicks told MPR News she drove to the Whipple Federal Building near Ft. Snelling Thursday night to give the man his medication but authorities wouldn't take it without a doctor's note. S...
https://www.mprnews.org/story/2026/02/06/transplant-recipient-arrested-by-federal-agents-in-rochester-minnesota-needs-medicine
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Zeitlinger Lab
5 months ago
The new updates for Charles McAnany’s preprint “Positional Interpretation of Cis-Regulatory Code and Nucleosome Organization with Deep Learning Models” (
www.biorxiv.org/content/10.1...
) are up! We introduce PISA, a tool to visualize the cis-regulatory code. See a recap below:
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https://www.biorxiv.org/content/10.1101/2025.04.07.647613v3
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First ai ruined dashes, now it has also ruined UIs with gradients and rectangular divs with lots of padding and large corner radii
5 months ago
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Been calling senators/reps offices a lot lately but just had a real human staffer pick up for the first time to listen to my comment. This tells me their lines are not busy enough! Fill up their voicemails!
5 months ago
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max nesterak
5 months ago
It’s -9 degrees. Downtown Minneapolis is packed for the anti-ICE rally and the crowd keeps growing
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Katie Mack
5 months ago
Any one of these daily atrocities should result in a full congressional investigation and a disbanding of the agency. The fact that it’s all just shrugged off by those with the power to stop it is a national disgrace.
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Jessica Hullman
6 months ago
Wrote a summary of a great keynote by
@zey.bsky.social
at NeurIPS, arguing that we’re having the wrong nightmares about AI: not AGI or superhuman benchmarks, but good-enough genAI at scale threatens "load bearing frictions" society relies on to signal effort, authenticity, sincerity, credibility.
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Zeynep Tufecki on having the wrong nightmares about generative AI
I was writing a blog post where I was going to reference Zeynep Tufecki’s 2025 NeurIPS keynote, and realized there isn’t a solid synopsis online.
https://open.substack.com/pub/jessicahullman/p/zeynep-tufecki-on-having-the-wrong?utm_campaign=post-expanded-share&utm_medium=web
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Jen Bendery
5 months ago
The Congressional Progressive Caucus, a group of nearly 100 House Democrats, will announce later today that it's formally endorsing legislation to strip $175 billion from ICE and put it toward affordable housing.
www.huffpost.com/entry/doj-fe...
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Progressive Caucus Backs Bill To Redirect ICE Money To Affordable Housing
https://www.huffpost.com/entry/doj-fed-powell-golden-globes-2026_n_6964c61ee4b0b3be67eb8c89/liveblog_6967f35de4b0141cc9b21166
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amanda moore 🐢
5 months ago
Today at 34 & Park in Minneapolis, a woman tried to drive down the street where a protest had broken out in front of a home ICE was raiding, saying she had a doctor apt to get to. ICE agents busted out her windows, cut off her seatbelt, and pulled her out before arresting her.
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Agustin Capeletto
7 months ago
Introducing VoxCSS: a DOM based voxel engine
github.com/LayoutitStud...
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GitHub - LayoutitStudio/voxcss: A DOM based voxel engine. Renders HTML cuboids by stacking CSS grid layers and applying 3D transforms.
A DOM based voxel engine. Renders HTML cuboids by stacking CSS grid layers and applying 3D transforms. - LayoutitStudio/voxcss
https://github.com/LayoutitStudio/voxcss
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Dom Ervolina
5 months ago
A video of ICE agents conducting door-to-door searches today in Minneapolis The homeowner requests a warrant repeatedly, is told they don't require one, then is told they're getting it, then the agents storm in anyway They also point a taser at her to try and disrupt filming
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Fabian Theis
6 months ago
🔬 pertpy: a unified, scalable framework for single-cell perturbation analysis, now out in Nature Methods Designed for modern perturbation data - CRISPR, drug screens, patient treatments - scaling to millions of cells and 1000s of conditions. 👉
www.nature.com/articles/s41...
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Ed Newton-Rex
6 months ago
A new paper from Stanford adds further, incontrovertible evidence that LLMs memorize training data. The authors showed that copyrighted works can be extracted from every LLM they tried: GPT-4.1, Gemini 2.5 Pro, Grok 3, and Claude 3.7 Sonnet. 🧵 1/3
arxiv.org/pdf/2601.026...
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Helena Klara Jambor
6 months ago
Too lazy for 2 clicks, here you go:
tonsky.me/blog/tahoe-i...
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It’s hard to justify Tahoe icons
Looking at the first principles of icon design—and how Apple failed to apply all of them in macOS Tahoe
https://tonsky.me/blog/tahoe-icons/
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Everyone's least favorite lab mate
6 months ago
🎉 New year, NEW PREPRINT! Bacteria exhibit astonishing genetic diversity, but where do new genes come from? My best friend Arya Kaul (/labmate in the @baym lab) investigates how advantageous deletions can spawn new genes - "deletion-born fusions." 🧵:
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Your Local Epidemiologist
6 months ago
7/ Here's the bottom line: This is an unprecedented shift that risks weakening protection against preventable diseases at a time when outbreaks are rising and children are already being hospitalized. Vaccines don’t work without strong supporting systems...and the U.S. doesn’t have Denmark’s.
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Anisota
7 months ago
Hello moths, The harvest has arrived:
anisota.net/harvest
It's like Spotify Wrapped, but for Bluesky and the ATmosphere. 🌾 See your most-used words, discover who you interact with most, explore your posting patterns, and find all sorts of fun insights.
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Anisota's Annual Bluesky Harvest 2025
A recap of your year on Bluesky. Discover patterns, connections, and insights from your journey in the ATmosphere.
https://anisota.net/harvest
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evacide
6 months ago
If you are a resident of California, the state now has a portal where you can demand deletion of your personal data from 500+ registered data brokers with a single request form, for free.
consumer.drop.privacy.ca.gov
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https://consumer.drop.privacy.ca.gov/
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Becky Dale
6 months ago
New record year for renewable electricity in Britain - thanks especially to strong solar output. Read our analysis of 2025 here
www.bbc.co.uk/news/article...
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David A Knowles
6 months ago
#MLCB2025
proceedings are up at
proceedings.mlr.press/v311/
!
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Proceedings of Machine Learning Research
Proceedings of the 20th Machine Learning in Computational Biology meeting Held in New York, NY, USA on 10-11 September 2025 Published as Volume 311 by the Proceedings of Machine Learning Research on 3...
https://proceedings.mlr.press/v311/
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This exists 😁
6 months ago
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App idea: rover, but for sourdough starters and leivito madre. it will be called doughver
6 months ago
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Saez-Rodriguez Group
6 months ago
See 👇 our new manuscript introducing SpaCEy, an explainable method for predicting clinical outcomes from spatial omics data 🧬 📄 Paper:
www.biorxiv.org/content/10.6...
💻 Code repo:
github.com/saezlab/SpaCEy
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Science Magazine
6 months ago
The structure of the bacterial genotoxin colibactin bound to DNA shows how it might contribute to cancer risk. Learn more in a new
#SciencePerspective
:
https://scim.ag/4iJPFVS
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Molecular basis of DNA cross-linking by bacteria
The structure of the bacterial genotoxin colibactin bound to DNA shows how it might contribute to cancer risk
https://scim.ag/4iJPFVS
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Aaron Rupar
6 months ago
GLASHEEN: Antifa is our primary concern right now. That's the most immediate violent threat we're facing BENNIE THOMPSON: Where is antifa headquartered? GLASHEEN: ... ... ... we are building out the infrastructure right now THOMPSON: What does that mean?
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Aaron Rupar
6 months ago
MAGAZINER: How many veterans have you deported? NOEM: We haven't deported veterans MAGAZINER: We are now joined on Zoom by a combat veteran you deported to Korea
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Sasha Gusev
7 months ago
Massive single-cell study by Kanai et al (
www.medrxiv.org/content/10.1...
): - Once statistical power is high, constrained genes have more (though weaker) eQTLs. - Chromatin-QTLs near constrained genes have "normal" effect sizes, colocalize more with disease, but exhibit attenuated peak-gene effects.
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Heather Bryant
7 months ago
I don't understand how anyone can watch how blatantly Grok is manipulated to answer the way ownership desires it to and then act like the other LLM chatbots couldn't possibly be similarly but less obviously compromised to produce responses in whatever way corporate interests and priorities dictate.
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When reading a long stream-of-consciousness-type message on github or slack
7 months ago
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Emi Tanaka
7 months ago
My paper "Examining the Interface Design of Tidyverse" is now published in ANZJS. This paper calls attention to the importance of UI/UX principles & approaches to statisiticians and
#rstats
developers. Many thanks to reviewers who made this paper better! 🔗
onlinelibrary.wiley.com/share/author...
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