so i guess dcm2bids died because they made breaking changes multiple times? codebase hasn't been updated in years. what are people using now?

How do we define "good" fMRI data? Especially with resting state, there are circularity risks if we evaluate data quality as showing the networks we expect to see. Javier Gonzalez-Castillo (& me & others) developed pBOLD, a new metric that uses multi-echo info. www.biorxiv.org/content/10.6... 1/8

For nearly two decades resting-state fMRI has ruled supreme. And resting-state is suprisingly powerful. But we can do so much better by using broad batteries of tasks with the right design. Here a double-punch delivered by two papers from @carobellum.bsky.social and @basselarafat.bsky.social!

Thanks so much @tknapen.bsky.social and Gilles de Hollander for their @openneuro.bsky.social upload of a special ODC dataset. Was able to replicate the ODC findings from your subject 6 using my afni_proc + SUMA-based pipeline. i'll post the LH below.

🧠 Resting-state fMRI is often treated as the gold standard for studying the brain’s intrinsic organization. But is it actually the best way to estimate functional architecture? We tested this directly. 🧵1/8

Brain mechanisms of pain anticipation in chronic low back pain: Insights into phenotypical responses to mind-body therapy - The Journal of Pain www.jpain.org/article/S152...

If you teach young aspiring scientists, the new "Crash Course Scientific Thinking" on youtube is quite good. Up to episode 5 right now. Honestly, should be mandatory viewing in junior highs in the US, IMO.

I've been testing Claude to see how well it can "vibe out" a stat. power app that I've already coded completely myself - so I know what I want. It mostly gets things right with animations (those are easily verifiable) but looking into the backend stats code is nightmare inducing (see pic).

Today I am excited to introduce respyra - an open-source Python toolbox for respiratory tracking experiments in interoception research! Now on PyPI (pip install respyra) with a preprint on PsyArXiv: osf.io/preprints/ps... GitHub: github.com/embodied-com...

Openness means more than access. That's why we encourage submissions of Replication Studies. Learn about publishing your replication study with us in our author guide: buff.ly/rcI0oAY

An open fMRI resource for studying human brain function and covert consciousness under anesthesia | Scientific Data www.nature.com/articles/s41...

Postdoc position to work on neuroimaging methods with @fmri-today.bsky.social (and me) fim.nimh.nih.gov/positions-av...

🚨 I'm searching for a full-time research coordinator to join my group & work on precision brain 🧠 network and cognitive control projects at both 3T and 7T. Please rt 🙌 Applications due: Feb. 26 Start date: flexible, as early as June More 👇 #neuroskyence #PsychSciSky

For 15(!) years I’ve been teaching introductory #MRI to grad students, and struggled to find a textbook for a wide variety of backgrounds. I'm happy to share an online textbook I created, fully open source (including code for generating figures and plots shown): larsonlab.github.io/MRI-educatio...

A new MRI protocol can scan the human brain and its venous network in under 7 minutes at 0.35 mm iso. resolution, marking it as a potential tool for diagnosing cerebrovascular diseases and monitoring neurodegeneration. scim.ag/3LkRfRY

“These findings provide clear evidence that data collected on MTurk simply cannot be trusted.”

Want to learn about FMRI visualization, processing and group analysis? Join us for the next AFNI Bootcamp (Jan. 27-29, 2026) for a fun few days of theory and interactive practicals. Details+registration for this virtual course: afni.nimh.nih.gov/bootcamp

The best science images of 2025 — Nature’s picks www.nature.com/immersive/d4...

New paper in Imaging Neuroscience by Ajay D. Halai, Marta M. Correia, et al: Comparing the effect of multi-gradient echo and multi-band fMRI during a semantic task doi.org/10.1162/IMAG...

nice anatomically-constrained simulations of high field magnetic vestibular stimulation www.nature.com/articles/s43...

Paper by @frosas.bsky.social www.nature.com/articles/s41...

Excited to share our new work in @natcomms.nature.com: Functional network collapse in neurodegenerative disease How does functional connectivity change across dementia types and stages? www.nature.com/articles/s41...

After 25 years of living with essential tremor, one UCSF patient picked up a spoon & didn't spill a drop! With the help of Drs. Doris Wang & Leo Sugrue, focused ultrasound treatment gave him back everyday moments & confidence. #EssentialTremor Watch:

We had a collab at a scanner without video capabilities, so it was fun to reach into my music background and create a flexible paced audio experiment for fMRI finger tapping. github.com/samtorrisi/m... Let me know if you give it a shot. SC is an easy install:

New AFNI Academy playlist! This tutorial presents afni_proc.py's quality control HTML for single subject FMRI. The APQC HTML has systematic views of data and useful derived quantities. Users can instantly rate, comment and query the fully processed subject data. www.youtube.com/watch?v=hD9z...

Shearer et al. introduce an interactive web application for exploring fMRI effect maps: doi.org/10.52294/001... @halleeshearer.bsky.social @sneuroble.bsky.social @ohbmossig.bsky.social #OpenDatasets #SpecialIssue

What a fantastic 2025 Erwin L. Hahn Lecture & Workshop! Did you enjoy it as much as we did? If you’d like to rewatch Larry Wald’s keynote “MR technology; from elegant physics to elegant engineering and back again” (or missed it), find it here: hahn-institute.de/en/info/even... #HahnLecture25

We wrote a blog post about common misconceptions of basic EPI parameters. Test your knowledge of EPI myths. layerfmri.com/epimyths/ 1/3

A word that has become a euphemism for promoting and selling things without data or evidence

New paper in Imaging Neuroscience by Marc-Antoine Fortin, Pål Erik Goa, et al: GOUHFI: A novel contrast- and resolution-agnostic segmentation tool for ultra-high-field MRI doi.org/10.1162/IMAG...

FWIW: our group collects a lot of highly-accelerated fMRI at 3T and 7T; as you know the single band reference images have a ton more contrast than the accelerated data. However, I've never once needed to use them because afni_proc does so well with alignment and blip-up/down distortion correction.

Since I can’t work my day job, I’m back to my side gig. 7 handmade dichroic stained glass brains up for grabs tonight at 7pm EST at www.brainedglass.com

hey MRI-ers: 5+ mins of detail about this detail! no but srsly good to know this exists youtu.be/SPNPZJingZA?...

A lot of people think that every international student admitted means one fewer spot for domestic students, when the opposite is more likely true - the tuition revenue international students bring allows public universities to provide substantial discounts to domestic students, improving access.

tempting youtube.com/watch?v=DC2p...

New preprint from stellar IRTG PhD student Amelie Rauland + team on white matter bundle reconstruction! Shows that WM bundles can be reliably extracted from simple 32-direction dMRI & features predict cognition - huge potential for legacy and clinical data. Thread 👇 www.biorxiv.org/cgi/content/...

From a few years ago but it disappeared off yt so I recently re-uploaded. SurfLayers demo. #tbt youtu.be/Py0a8O2h-gc?...

Our review discussing the potential use of laminar fMRI for probing the role of cortical layers in epileptic seizure propagation and spread as well as it possible future clinical applications out in Brain (well as accepted manuscript!) academic.oup.com/brain/advanc...

I miss the old brand #CDC

When powering fMRI studies, sample size is king, but scan duration can also be a powerful tool, improving phenotypic prediction and cost-efficiency, a new analysis shows By @claudia-lopez.bsky.social #neuroskyence www.thetransmitter.org/fmri/longer-...

looks like a great resource www.ipem.ac.uk/resources/mr...

@UCLA is a global leader in research, innovation, education, and healthcare. The federal government’s $1B demand would devastate the nation’s top public research university, cut off life-saving care, and halt tech and economic growth. #StandUpForUC bit.ly/standuc

i'm collecting a super small FOV and want a lateralized fiducial marker that's not focal like a vitamin E capsule but rather like a "strip" so it'll be present despite where I place the acquisition window. ideas? dielectric pads are too thick and obviously i wouldn't want to place only 1