barbieQ: An R software package for analysing barcode count data from clonal tracking experiments https://www.biorxiv.org/content/10.1101/2025.09.11.675529v1

Great work by our PhD student @fei-liyang.bsky.social in developing a @bioconductor.bsky.social package for the statistical analysis of barcode counts from clonal tracking/lineage tracing experiments. Preprint out now! 🎉 Catch her at the #EuroBioC2025 and #EMBOlineageTracing conferences.

BarbieQ: Our new paper outlining our bioconductor package for the statistical analysis of barcode count data. Lineage tracing and clonal tracking. They made us add the Q

Early bird deadline extended for #AGTA #AGTA2025 This year will be quite different, with a big focus on tech, low cost Rego, digital engagement, and in a central location. Don't miss the ECR events, exhibitor lounges (à la AGBT) and two lightning talk sessions, open to industry members: agta2025.com

🚨 Less than 48 hours left! 🚨 Abstract submissions for #ABACBS2025 close midnight Friday, Aug 15 — no extensions. www.abacbs.org/abacbs2025

Initial findings from the DecodeME genome-wide association study of myalgic encephalomyelitis/chronic fatigue syndrome now on medRXiv www.medrxiv.org/content/10.1...

🌅🐦‍⬛Early bird Registration for #AGTA2025 is live! Submit your abstract 📝 and check-out the awesome 🗓️ program here ➡️ agta2025.org

The day is finally here! 🎉 We’re releasing the invited speaker line-up, key dates, and lots more info for ABACBS 2025. Check it out and share widely: www.abacbs.org/abacbs2025 Registrations and abstract submissions open next week, with abstracts due in August!

Excited to be attending Cancer Bioinformatics Australia (CBA) in Sydney today! @cancerbioinfoau.bsky.social Chelsea Mayo opening

In case you went home early, @shalinhnaik.bsky.social did sing 🎤 #ozsinglecell2025

We hope you’re loving #ozsinglecell2025. Some amazing single cell science and technology on display!

Joseph Powell welcomes everyone to the start of #ozsinglecell2025!

Ready to for some amazing single cell science @ozsinglecell.bsky.social!

On my way to Sydney for some @ozsinglecell.bsky.social fun #ozsinglecell2025

We had a great morning session, including a keynote on single cells and long reads @aliciao.bsky.social, and talks on spatial transcriptomics @rohitsingh8080.bsky.social, DNA storage, and TAD inference

Thrilled to have @aliciao.bsky.social as a keynote in @recombseq.bsky.social today!! #RECOMBseq

🚀 Just 2 days to go! Excitement is building for #RECOMBseq 2025 in Seoul 🎉 Join leading researchers as we dive into cutting-edge computational genomics, from single-cell to long-read sequencing. 🗓 April 24-25 📍 Seoul 📄 Program: recomb-seq.github.io/program/ #RECOMB2025 #Genomics #Bioinformatics

On my way to #RECOMBseq, my first international conference since 2019! @recombseq.bsky.social

Just 9 days to go! #RECOMBseq hits Seoul on April 24 🧬🇰🇷 Join us for two days of cutting-edge high-throughput sequencing algorithms, global scientific minds, and vibrant city vibes. 📄 Check out the full program here: recomb-seq.github.io/program/ #RECOMB2025 #Genomics #Bioinformatics

Hey #genomics, #bioinformatics & #algorithms peeps 💻🧬. If you haven't seen the CfP for WABI '25 yet, check out the website wabiconf.github.io/2025/. It will be held at UMD @umdscience.bsky.social with Broňa Brejová & myself as co-chairs! Submit your exciting & late-breaking algorithmic work to WABI

📣 ABSTRACTS 📣 Submit your abstract for OZ Single Cell in Sydney by April 11 docs.google.com/forms/d/1jDv...

A group leader position is open at Peter Mac in Melbourne, Australia! Join us! Applications until May 5. 👇👇 www.nature.com/naturecareer...

Start a group with us in Melbourne at PeterMac! www.nature.com/naturecareer...

What a great lineup! #ozsinglecell25

Delighted to see this published. Congratulations Ying Chen and @jonathangoeke.bsky.social

Come and set up a lab and work with us at @petermaccc.bsky.social

An Analysis presents benchmarking results from the Singapore Nanopore Expression consortium project, plus a valuable resource of datasets generated from various long-read and short-read RNA sequencing technologies. @jonathangoeke.bsky.social @astar-gis.bsky.social www.nature.com/articles/s41...

Delighted to see this published. Congratulations Ying Chen and @jonathangoeke.bsky.social

Join us @petermaccc.bsky.social !

We are recruiting a group leader in laboratory research at Peter Mac Cancer Centre in Melbourne, Australia 🔬🦘💥 Work in a cutting edge research environment in a vibrant world city! We value research excellence, creativity and diversity. Join us! careers.petermac.org/job/MELBOURN...

Come and set up a lab and work with us at @petermaccc.bsky.social

Go Allen! @ali-geeee.bsky.social

Our CITE-seq paper analysing 45 BAL samples from (un)treated kids with CF and contrls. BAL is tricky, 44 celltypes dominated by macrophages. Trailblazing analysis led by @jovmaksimovic.bsky.social @melanieneeland.bsky.social @shivanthans.bsky.social and collaborators www.medrxiv.org/content/10.1...

Our CITE-seq paper analysing 45 BAL samples from (un)treated kids with CF and contrls. BAL is tricky, 44 celltypes dominated by macrophages. Trailblazing analysis led by @jovmaksimovic.bsky.social @melanieneeland.bsky.social @shivanthans.bsky.social and collaborators www.medrxiv.org/content/10.1...

Pleased to present our CITE-seq paper analysing 45 BAL samples from (un)treated children with CF and controls. BAL is a tricky tissue, 44 celltypes dominated by macrophages. Trailblazing analysis led by @jovmaksimovic.bsky.social @melanieneeland.bsky.social @shivanthans.bsky.social and collaborators

Pleased to present our CITE-seq paper analysing 45 BAL samples from (un)treated children with CF and controls. BAL is a tricky tissue, 44 celltypes dominated by macrophages. Trailblazing analysis led by @jovmaksimovic.bsky.social @melanieneeland.bsky.social @shivanthans.bsky.social and collaborators

Single-cell atlas of BAL from preschool cystic fibrosis reveals key inflammatory pathways modified by the CFTR modulator ivacaftor in the early life lung. https://www.medrxiv.org/content/10.1101/2025.02.24.25322508v1

❤️Bioinformatics + cancer❤️

This morning I’m at the @petermaccc.bsky.social Women in Science Symposium. Proud to work in an environment that openly and vigorously supports diversity and inclusion. The lecture theatre is full! #IWD2025

📣 Registrations and Abstract submissions are now open for Cancer Bioinformatics Australia 2025! Abstracts, due 11th April: cancerbioinformatics.au/abstracts Registration: cancerbioinformatics.au/register Further info: cancerbioinformatics.au See flyer for our amazing invited speakers!

Our new paper examining how to analyse longread RNA-seq with no reference genome. We compare approaches for assembly and downstream analysis, from transcript accuracy to differential expression. Lead by @alexyfyf.bsky.social. Thnx to all contributors incl. @qgouil.bsky.social for the pea data!

Heading to #lornegenome25 #LorneCancerConference ? Looking for a computational postdoc to work on spatial and single nuclei transcriptomics of poor prognosis cancers, please DM me or see me at Lorne. We will be advertising soon. @ozsinglecell.bsky.social #LorneCancer2025 #Lorne2025

Registration is open! Join us for the 8th Oz Single Cell conference in Sydney (21st - 23rd May). Amazing line up of speakers! Early bird registration until 9th April. www.eventbrite.com.au/e/oz-single-...

Check out our speakers for #ozsinglecell25. May 21-23, Sydney Registrations opening soon www.ozsinglecell.com

@ozsinglecell.bsky.social #OzSingleCell25 has a new website www.ozsinglecell.com See the current list of invited speakers and stay tuned for registration details. Sponsors reach out to [email protected]

This will be my first international conference since 2019 🎉

🚨 Keynotes at RECOMB-seq 2025! 🚨 🌟 Alicia Oshlack – computational transcriptomics @aliciao.bsky.social 🌟 Rayan Chikhi – sequencing data structures @rayanchikhi.bsky.social 🗓️ Dates: April 24–25, 2025 📍 Seoul, South Korea recomb-seq.github.io/speakers/

Two tenure-track positions on computational (www.upf.edu/ca/web/biome...) and quantitative (www.upf.edu/ca/web/biome...) biology at the Medicine and Life Sci. Dept. of @upf.edu. Come and join us to work in the unique environment of @prbb.org at the seafront of Barcelona! Deadline Jan 28. Please RP!!

Did you “Save the date”? If so you may have noticed these are not the right dates!!! Please save 21-23 May