Alicia Oshlack
@aliciao.bsky.social
๐ค 3236
๐ฅ 463
๐ 57
Bioinformatics and Computational Biology. Australia
reposted by
Alicia Oshlack
Dr Monique Ryan
12 days ago
Medical research matters! Australian scientists are making potentially lifesaving breakthroughs into the molecular mechanisms of brain tumours - discoveries with potential for commercialisation and global uptake. We should support them better via the MRFF and NHMRC.
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Markโs deadly cancer will come back. Now scientists know why
When Mark Norris finished his cancer treatment, there was nothing doctors could do except wait for it to return. The father of two says thatโs not good enough.
https://www.theage.com.au/national/mark-s-deadly-cancer-will-come-back-now-scientists-know-why-20251212-p5nn7t.html
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Alicia Oshlack
Cancer Bioinformatics Australia
22 days ago
๐ฃ Save The Date for Cancer Bioinformatics Australia 2026! ๐ฃ CBA will be back in 2026 on June 5th, this time in Brisbane! It will feature oral and poster presentations, networking opportunities, and high-profile invited national and international speakers. Further info:
cancerbioinformatics.au
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Put this in your diary. Merry Christmas ๐
add a skeleton here at some point
22 days ago
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reposted by
Alicia Oshlack
European Conference on Computational Biology
about 1 month ago
๐ข ECCB2026 - Call for proceedings now open ! The Scientific Committee welcomes full manuscripts presenting original and unpublished work in computational biology. ๐ Deadline: 5 March 2026, 1 p.m. CET ๐
eccb2026.org/call-proceedings
#ECCB2026
#Bioinformatics
#ComputationalBiology
#CallForPapers
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Today Iโm excited to be attending the MIG Symposium
@mig-unimelb.bsky.social
They have a photo booth
about 1 month ago
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reposted by
Alicia Oshlack
Rafael Irizarry
about 1 month ago
๐ข We are taking applications for our Postdoctoral Fellows Program at Harvard/DFCI! ๐นJoin a research group in our department ๐นCo-mentoring opportunities with 2+ faculty ๐นCollaborate with investigators beyond our department ๐นSalary starts at $75K Apply here:
t.co/B7SLZzQFKu
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https://ds.dfci.harvard.edu/postdocs/
https://t.co/B7SLZzQFKu
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reposted by
Alicia Oshlack
Wolfgang Huber
about 1 month ago
Join EMBL's Interdisciplinary Postdoc Programme! 3 years funding, self-designed interdisciplinary project co-led between EMBL PI and PI in one of EMBL's actual, prospect or associate member states. In particular: AI&Theory, use mathem. models, physics principles and AI
www.embl.org/about/info/p...
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EIPOD-LinC Fellowship Programme โ Postdoctoral Programme
https://www.embl.org/about/info/postdoctoral-programme/eipod-linc-exploring-life-in-context/
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reposted by
Alicia Oshlack
Feargal Ryan
about 1 month ago
Thatโs a wrap! Huge thank you to everyone who joined us for
#ABACBS2025
& a big shout-out to the Adelaide bioinfo community who worked their butts off. Couldnโt have asked for a better crew or a better venue than Adelaide Oval.
@wessidepraxis.bsky.social
@linsalrob.bsky.social
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reposted by
Alicia Oshlack
Gunjan Dixit
about 1 month ago
Come say hi at my poster (#49, Wednesday session) to learn how weโre building a healthy atlas of pediatric airwaysโฆ how not to lose your mind while wrangling half a million cellsโฆ or just to have a chat about cricket!
#ABACBS2025
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reposted by
Alicia Oshlack
Jovana Maksimovic
about 1 month ago
Chelsea Mayoh at
#abacbs2025
: "If you're not using RNA-seq in your precision medicine program you're probably missing stuff"! Great to see
@aliciao.bsky.social
lab tools MINTIE, ALLsorts and TALLsorts making an appearance ๐
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reposted by
Alicia Oshlack
Sanduni Rajapaksa
about 1 month ago
Learn how to ATAClone on Friday 29 Nov 9.00 am @ Room 506, Festival Tower
github.com/TrigosTeam/A...
#ABACBS2025
@lachlancain.bsky.social
@abacbs.bsky.social
@annatrigos.bsky.social
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PeterMac
@petermaccc.bsky.social
representing at
#abacbs2025
What a community ๐
about 1 month ago
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reposted by
Alicia Oshlack
Gunjan Dixit
about 1 month ago
@lonsbio.bsky.social
you absolutely deserve the "Nick Wong" community building award! Thanks for being the social glue and for your wise words!
#ABACBS2025
๐๐๐๐
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reposted by
Alicia Oshlack
Jovana Maksimovic
about 1 month ago
Congrats
@lonsbio.bsky.social
on being awarded the inaugural
@abacbs.bsky.social
Nick Wong Community Building Award at
#abacbs2025
!
@hdashnow.bsky.social
was absolutely right - you really are the Ted Lasso of Australian bioinformatics and computational biology ๐
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You won Andrew!
@lonsbio.bsky.social
#ABACBS2025
about 1 month ago
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reposted by
Alicia Oshlack
Jovana Maksimovic
about 1 month ago
10 incredible years of bioinformatics and computational biology community building by
@abacbs.bsky.social
- enjoying catching up with old friends at
#abacbs2025
๐ฅ
@aliciao.bsky.social
@nadia-davidson.bsky.social
@shazanfar.bsky.social
@ellispatrick.bsky.social
Jean Yang Belinda Phipson Milica Ng
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The gang back together at
#ABACBS2025
@jovmaksimovic.bsky.social
@nadia-davidson.bsky.social
and
@belphip.bsky.social
about 1 month ago
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reposted by
Alicia Oshlack
Gunjan Dixit
about 1 month ago
Wonderful talk by
@jovmaksimovic.bsky.social
on detecting gene fusions at single-cell resolution using custom probes
#Flexify
#ABACBS2025
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Awesome talk by
@jovmaksimovic.bsky.social
one detecting fusions in single cells with probes designed for 10X Flex. If I do say so myself ๐
#ABACBS2025
about 1 month ago
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reposted by
Alicia Oshlack
Sagrika Chugh
about 1 month ago
@jovmaksimovic.bsky.social
taking us through cancer fusions at single-cell resolution with Flexify: automated Flex fusion probe design.
@abacbs.bsky.social
#ABACBS2025
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reposted by
Alicia Oshlack
Mike Clark
about 1 month ago
@jovmaksimovic.bsky.social
โ On how to โeasilyโ detect fusions in single-cells. 1. Identify fusions with bulk RNA seq. 2. Use Flexify to design fusion detection probes for 10x Flex. 3. Detect fusions and their expression in each cell with scRNA-seq.
#abacbs2025
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reposted by
Alicia Oshlack
Monika Mohenska
about 1 month ago
Studying cancer fusion expression with 10X flex system
@jovmaksimovic.bsky.social
at
#ABACBS2025
๐งฌ
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reposted by
Alicia Oshlack
Dr Andrew Lonsdale
about 1 month ago
Can you feel it? Conference Twitter is back, in Blue Sky form ! โโโโโโโโ โซ๏ธ๐ด
#abacbs2025
๐ตโช๏ธ
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reposted by
Alicia Oshlack
Gunjan Dixit
about 1 month ago
Show me a better conference venue than
#ABACBS25
, where you can see a live match during the break! ๐๐๏ธ
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reposted by
Alicia Oshlack
Jovana Maksimovic
about 1 month ago
Yaaaassssssss!
@abacbs.bsky.social
Conference Twitter was the best - so happy that
#abacbs2025
is resurrecting it.
add a skeleton here at some point
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reposted by
Alicia Oshlack
Dr Andrew Lonsdale
about 1 month ago
#confbingo
was always a great part of ABACBS
#abacbs2025
, and in honour of the celebrations of the society this year, it's back! Terms have been updated from the last iteration in 2018, but if there are any great suggestions let me know. Get your card and play along
confbingo.shinyapps.io/bingo25/
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https://confbingo.shinyapps.io/bingo25/
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reposted by
Alicia Oshlack
Jovana Maksimovic
about 1 month ago
If you're interested in cell-cell communication checkout
www.connectomedb.org
for the most comprehensive manually curated database of cellular interactions from
@alforrest.bsky.social
's lab
#abacbs2025
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โ ConnectomeDB2025
https://www.connectomedb.org/
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reposted by
Alicia Oshlack
Jovana Maksimovic
about 1 month ago
So excited for the start of
#ABACBS2025
. It's been incredible to see this community grow over the last decade. Happy 10th anniversary
@abacbs.bsky.social
! ๐
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The Governor of SA has really done her homework on bioinformatics! Great opening of
#ABACBS2025
about 1 month ago
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Well done to the outgoing and incoming
#COMBINE2025
presidents! Very proud of both Liyang Fei and Caitlin Page, PhD students in my group!
#ABACBS2025
about 2 months ago
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Excited to be on my way to Adelaide for
#ABACBS2025
with guest appearance at
#COMBINE2025
about 2 months ago
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Maybe we need the return of
#ABACBS2025
conference bingo
#confBingo
? Is Breon Schmidt here?
about 2 months ago
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reposted by
Alicia Oshlack
about 2 months ago
Walkthrough of the conference centre ahead of
#ABACBS2025
later this month. Bit overcast in Adelaide today but hoping for clear skies at the conference โ๏ธ๐ถ๏ธ
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reposted by
Alicia Oshlack
bioRxiv Bioinfo
4 months ago
barbieQ: An R software package for analysing barcode count data from clonal tracking experiments
https://www.biorxiv.org/content/10.1101/2025.09.11.675529v1
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reposted by
Alicia Oshlack
Jovana Maksimovic
4 months ago
Great work by our PhD student
@fei-liyang.bsky.social
in developing a
@bioconductor.bsky.social
package for the statistical analysis of barcode counts from clonal tracking/lineage tracing experiments. Preprint out now! ๐ Catch her at the
#EuroBioC2025
and
#EMBOlineageTracing
conferences.
add a skeleton here at some point
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BarbieQ: Our new paper outlining our bioconductor package for the statistical analysis of barcode count data. Lineage tracing and clonal tracking. They made us add the Q
add a skeleton here at some point
4 months ago
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reposted by
Alicia Oshlack
Martin Smith
4 months ago
Early bird deadline extended for
#AGTA
#AGTA2025
This year will be quite different, with a big focus on tech, low cost Rego, digital engagement, and in a central location. Don't miss the ECR events, exhibitor lounges (ร la AGBT) and two lightning talk sessions, open to industry members:
agta2025.com
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reposted by
Alicia Oshlack
5 months ago
๐จ Less than 48 hours left! ๐จ Abstract submissions for
#ABACBS2025
close midnight Friday, Aug 15 โ no extensions.
www.abacbs.org/abacbs2025
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ABACBS 2025 Conference
Adelaide, South Australia. Nov. 24-
https://www.abacbs.org/abacbs2025
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reposted by
Alicia Oshlack
Chris Ponting
5 months ago
Initial findings from the DecodeME genome-wide association study of myalgic encephalomyelitis/chronic fatigue syndrome now on medRXiv
www.medrxiv.org/content/10.1...
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reposted by
Alicia Oshlack
Martin Smith
6 months ago
๐ ๐ฆโโฌEarly bird Registration for
#AGTA2025
is live! Submit your abstract ๐ and check-out the awesome ๐๏ธ program here โก๏ธ
agta2025.org
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reposted by
Alicia Oshlack
6 months ago
The day is finally here! ๐ Weโre releasing the invited speaker line-up, key dates, and lots more info for ABACBS 2025. Check it out and share widely:
www.abacbs.org/abacbs2025
Registrations and abstract submissions open next week, with abstracts due in August!
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ABACBS 2025 Conference
Adelaide, South Australia. Nov. 24-
https://www.abacbs.org/abacbs2025
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Excited to be attending Cancer Bioinformatics Australia (CBA) in Sydney today!
@cancerbioinfoau.bsky.social
Chelsea Mayo opening
7 months ago
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reposted by
Alicia Oshlack
Oz Single Cell
8 months ago
In case you went home early,
@shalinhnaik.bsky.social
did sing ๐ค
#ozsinglecell2025
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reposted by
Alicia Oshlack
Oz Single Cell
8 months ago
We hope youโre loving
#ozsinglecell2025
. Some amazing single cell science and technology on display!
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reposted by
Alicia Oshlack
Oz Single Cell
8 months ago
Joseph Powell welcomes everyone to the start of
#ozsinglecell2025
!
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reposted by
Alicia Oshlack
Dr Kate Giles
8 months ago
Ready to for some amazing single cell science
@ozsinglecell.bsky.social
!
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On my way to Sydney for some
@ozsinglecell.bsky.social
fun
#ozsinglecell2025
8 months ago
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reposted by
Alicia Oshlack
9 months ago
We had a great morning session, including a keynote on single cells and long reads
@aliciao.bsky.social
, and talks on spatial transcriptomics
@rohitsingh8080.bsky.social
, DNA storage, and TAD inference
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reposted by
Alicia Oshlack
Camille Marchet โก
9 months ago
Thrilled to have
@aliciao.bsky.social
as a keynote in
@recombseq.bsky.social
today!!
#RECOMBseq
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reposted by
Alicia Oshlack
9 months ago
๐ Just 2 days to go! Excitement is building for
#RECOMBseq
2025 in Seoul ๐ Join leading researchers as we dive into cutting-edge computational genomics, from single-cell to long-read sequencing. ๐ April 24-25 ๐ Seoul ๐ Program:
recomb-seq.github.io/program/
#RECOMB2025
#Genomics
#Bioinformatics
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Program
RECOMB-seq is the RECOMB Satellite Conference on Biological Sequence Analysis
https://recomb-seq.github.io/program/
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