Alicia Oshlack
@aliciao.bsky.social
π€ 3202
π₯ 440
π 47
Bioinformatics and Computational Biology. Australia
reposted by
Alicia Oshlack
bioRxiv Bioinfo
about 2 months ago
barbieQ: An R software package for analysing barcode count data from clonal tracking experiments
https://www.biorxiv.org/content/10.1101/2025.09.11.675529v1
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reposted by
Alicia Oshlack
Jovana Maksimovic
about 2 months ago
Great work by our PhD student
@fei-liyang.bsky.social
in developing a
@bioconductor.bsky.social
package for the statistical analysis of barcode counts from clonal tracking/lineage tracing experiments. Preprint out now! π Catch her at the
#EuroBioC2025
and
#EMBOlineageTracing
conferences.
add a skeleton here at some point
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BarbieQ: Our new paper outlining our bioconductor package for the statistical analysis of barcode count data. Lineage tracing and clonal tracking. They made us add the Q
add a skeleton here at some point
about 2 months ago
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reposted by
Alicia Oshlack
Martin Smith
2 months ago
Early bird deadline extended for
#AGTA
#AGTA2025
This year will be quite different, with a big focus on tech, low cost Rego, digital engagement, and in a central location. Don't miss the ECR events, exhibitor lounges (Γ la AGBT) and two lightning talk sessions, open to industry members:
agta2025.com
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reposted by
Alicia Oshlack
3 months ago
π¨ Less than 48 hours left! π¨ Abstract submissions for
#ABACBS2025
close midnight Friday, Aug 15 β no extensions.
www.abacbs.org/abacbs2025
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ABACBS 2025 Conference
Adelaide, South Australia. Nov. 24-
https://www.abacbs.org/abacbs2025
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reposted by
Alicia Oshlack
Chris Ponting
3 months ago
Initial findings from the DecodeME genome-wide association study of myalgic encephalomyelitis/chronic fatigue syndrome now on medRXiv
www.medrxiv.org/content/10.1...
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reposted by
Alicia Oshlack
Martin Smith
4 months ago
π π¦ββ¬Early bird Registration for
#AGTA2025
is live! Submit your abstract π and check-out the awesome ποΈ program here β‘οΈ
agta2025.org
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reposted by
Alicia Oshlack
4 months ago
The day is finally here! π Weβre releasing the invited speaker line-up, key dates, and lots more info for ABACBS 2025. Check it out and share widely:
www.abacbs.org/abacbs2025
Registrations and abstract submissions open next week, with abstracts due in August!
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ABACBS 2025 Conference
Adelaide, South Australia. Nov. 24-
https://www.abacbs.org/abacbs2025
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Excited to be attending Cancer Bioinformatics Australia (CBA) in Sydney today!
@cancerbioinfoau.bsky.social
Chelsea Mayo opening
5 months ago
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reposted by
Alicia Oshlack
Oz Single Cell
6 months ago
In case you went home early,
@shalinhnaik.bsky.social
did sing π€
#ozsinglecell2025
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reposted by
Alicia Oshlack
Oz Single Cell
6 months ago
We hope youβre loving
#ozsinglecell2025
. Some amazing single cell science and technology on display!
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reposted by
Alicia Oshlack
Oz Single Cell
6 months ago
Joseph Powell welcomes everyone to the start of
#ozsinglecell2025
!
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reposted by
Alicia Oshlack
Dr Kate Giles
6 months ago
Ready to for some amazing single cell science
@ozsinglecell.bsky.social
!
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On my way to Sydney for some
@ozsinglecell.bsky.social
fun
#ozsinglecell2025
6 months ago
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reposted by
Alicia Oshlack
7 months ago
We had a great morning session, including a keynote on single cells and long reads
@aliciao.bsky.social
, and talks on spatial transcriptomics
@rohitsingh8080.bsky.social
, DNA storage, and TAD inference
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reposted by
Alicia Oshlack
Camille Marchet β‘
7 months ago
Thrilled to have
@aliciao.bsky.social
as a keynote in
@recombseq.bsky.social
today!!
#RECOMBseq
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reposted by
Alicia Oshlack
7 months ago
π Just 2 days to go! Excitement is building for
#RECOMBseq
2025 in Seoul π Join leading researchers as we dive into cutting-edge computational genomics, from single-cell to long-read sequencing. π April 24-25 π Seoul π Program:
recomb-seq.github.io/program/
#RECOMB2025
#Genomics
#Bioinformatics
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Program
RECOMB-seq is the RECOMB Satellite Conference on Biological Sequence Analysis
https://recomb-seq.github.io/program/
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On my way to
#RECOMBseq
, my first international conference since 2019!
@recombseq.bsky.social
7 months ago
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reposted by
Alicia Oshlack
7 months ago
Just 9 days to go!
#RECOMBseq
hits Seoul on April 24 π§¬π°π· Join us for two days of cutting-edge high-throughput sequencing algorithms, global scientific minds, and vibrant city vibes. π Check out the full program here:
recomb-seq.github.io/program/
#RECOMB2025
#Genomics
#Bioinformatics
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Program
RECOMB-seq is the RECOMB Satellite Conference on Biological Sequence Analysis
https://recomb-seq.github.io/program/
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reposted by
Alicia Oshlack
Rob Patro
7 months ago
Hey
#genomics
,
#bioinformatics
&
#algorithms
peeps π»π§¬. If you haven't seen the CfP for WABI '25 yet, check out the website
wabiconf.github.io/2025/
. It will be held at UMD
@umdscience.bsky.social
with BroΕa BrejovΓ‘ & myself as co-chairs! Submit your exciting & late-breaking algorithmic work to WABI
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WABI 2025
WABI Conference on Algorithms in Bioinformatics
https://wabiconf.github.io/2025/
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reposted by
Alicia Oshlack
Oz Single Cell
8 months ago
π£ ABSTRACTS π£ Submit your abstract for OZ Single Cell in Sydney by April 11
docs.google.com/forms/d/1jDv...
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reposted by
Alicia Oshlack
Ben Hogan
8 months ago
A group leader position is open at Peter Mac in Melbourne, Australia! Join us! Applications until May 5. ππ
www.nature.com/naturecareer...
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Group Leader - Melbourne (Suburb), Greater Melbourne (Inner) (AU) job with Peter MacCallum Cancer Centre | 12837590
Peter Mac is recruiting a Group Leader to increase the capacity and efficiency of our βdiscovery to translationβ cancer research pipeline.
https://www.nature.com/naturecareers/job/12837590/group-leader/
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Start a group with us in Melbourne at PeterMac!
www.nature.com/naturecareer...
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Group Leader - Melbourne (Suburb), Greater Melbourne (Inner) (AU) job with Peter MacCallum Cancer Centre | 12837590
Peter Mac is recruiting a Group Leader to increase the capacity and efficiency of our βdiscovery to translationβ cancer research pipeline.
https://www.nature.com/naturecareers/job/12837590/group-leader/
8 months ago
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What a great lineup!
#ozsinglecell25
add a skeleton here at some point
8 months ago
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reposted by
Alicia Oshlack
Delighted to see this published. Congratulations Ying Chen and
@jonathangoeke.bsky.social
add a skeleton here at some point
8 months ago
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reposted by
Alicia Oshlack
Come and set up a lab and work with us at
@petermaccc.bsky.social
add a skeleton here at some point
8 months ago
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reposted by
Alicia Oshlack
Nature Methods
8 months ago
An Analysis presents benchmarking results from the Singapore Nanopore Expression consortium project, plus a valuable resource of datasets generated from various long-read and short-read RNA sequencing technologies.
@jonathangoeke.bsky.social
@astar-gis.bsky.social
www.nature.com/articles/s41...
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Delighted to see this published. Congratulations Ying Chen and
@jonathangoeke.bsky.social
add a skeleton here at some point
8 months ago
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reposted by
Alicia Oshlack
John Cusack
8 months ago
893
74197
14292
reposted by
Alicia Oshlack
Mel Eckersley-Maslin
8 months ago
Join us
@petermaccc.bsky.social
!
add a skeleton here at some point
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6
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reposted by
Alicia Oshlack
Ben Hogan
8 months ago
We are recruiting a group leader in laboratory research at Peter Mac Cancer Centre in Melbourne, Australia π¬π¦π₯ Work in a cutting edge research environment in a vibrant world city! We value research excellence, creativity and diversity. Join us!
careers.petermac.org/job/MELBOURN...
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Group Leader
Group Leader
https://careers.petermac.org/job/MELBOURNE-Group-Leader-VIC-3000/1062003466/
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Come and set up a lab and work with us at
@petermaccc.bsky.social
add a skeleton here at some point
8 months ago
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Go Allen!
@ali-geeee.bsky.social
add a skeleton here at some point
8 months ago
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reposted by
Alicia Oshlack
Our CITE-seq paper analysing 45 BAL samples from (un)treated kids with CF and contrls. BAL is tricky, 44 celltypes dominated by macrophages. Trailblazing analysis led by
@jovmaksimovic.bsky.social
@melanieneeland.bsky.social
@shivanthans.bsky.social
and collaborators
www.medrxiv.org/content/10.1...
9 months ago
0
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Our CITE-seq paper analysing 45 BAL samples from (un)treated kids with CF and contrls. BAL is tricky, 44 celltypes dominated by macrophages. Trailblazing analysis led by
@jovmaksimovic.bsky.social
@melanieneeland.bsky.social
@shivanthans.bsky.social
and collaborators
www.medrxiv.org/content/10.1...
9 months ago
0
10
5
reposted by
Alicia Oshlack
Pleased to present our CITE-seq paper analysing 45 BAL samples from (un)treated children with CF and controls. BAL is a tricky tissue, 44 celltypes dominated by macrophages. Trailblazing analysis led by
@jovmaksimovic.bsky.social
@melanieneeland.bsky.social
@shivanthans.bsky.social
and collaborators
add a skeleton here at some point
9 months ago
0
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Pleased to present our CITE-seq paper analysing 45 BAL samples from (un)treated children with CF and controls. BAL is a tricky tissue, 44 celltypes dominated by macrophages. Trailblazing analysis led by
@jovmaksimovic.bsky.social
@melanieneeland.bsky.social
@shivanthans.bsky.social
and collaborators
add a skeleton here at some point
9 months ago
0
14
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reposted by
Alicia Oshlack
medRxivpreprint
9 months ago
Single-cell atlas of BAL from preschool cystic fibrosis reveals key inflammatory pathways modified by the CFTR modulator ivacaftor in the early life lung.
https://www.medrxiv.org/content/10.1101/2025.02.24.25322508v1
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β€οΈBioinformatics + cancerβ€οΈ
add a skeleton here at some point
9 months ago
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This morning Iβm at the
@petermaccc.bsky.social
Women in Science Symposium. Proud to work in an environment that openly and vigorously supports diversity and inclusion. The lecture theatre is full!
#IWD2025
9 months ago
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reposted by
Alicia Oshlack
Cancer Bioinformatics Australia
9 months ago
π£ Registrations and Abstract submissions are now open for Cancer Bioinformatics Australia 2025! Abstracts, due 11th April:
cancerbioinformatics.au/abstracts
Registration:
cancerbioinformatics.au/register
Further info:
cancerbioinformatics.au
See flyer for our amazing invited speakers!
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reposted by
Alicia Oshlack
Nadia Davidson
9 months ago
Our new paper examining how to analyse longread RNA-seq with no reference genome. We compare approaches for assembly and downstream analysis, from transcript accuracy to differential expression. Lead by
@alexyfyf.bsky.social
. Thnx to all contributors incl.
@qgouil.bsky.social
for the pea data!
add a skeleton here at some point
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reposted by
Alicia Oshlack
Alistair Forrest
9 months ago
Heading to
#lornegenome25
#LorneCancerConference
? Looking for a computational postdoc to work on spatial and single nuclei transcriptomics of poor prognosis cancers, please DM me or see me at Lorne. We will be advertising soon.
@ozsinglecell.bsky.social
#LorneCancer2025
#Lorne2025
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https://bsky.app/profile/did:plc:gh54t6wafpptowxkx2zzbwuy
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reposted by
Alicia Oshlack
Oz Single Cell
9 months ago
Registration is open! Join us for the 8th Oz Single Cell conference in Sydney (21st - 23rd May). Amazing line up of speakers! Early bird registration until 9th April.
www.eventbrite.com.au/e/oz-single-...
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Oz Single Cell 2025 - Sydney, NSW
Eventbrite - Oz Single Cell presents Oz Single Cell 2025 - Sydney, NSW - Wednesday, 21 May 2025 | Friday, 23 May 2025 at Roundhouse, Kensington, NSW. Find event and ticket information.
https://www.eventbrite.com.au/e/oz-single-cell-2025-sydney-nsw-tickets-1226018768139
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reposted by
Alicia Oshlack
Oz Single Cell
10 months ago
Check out our speakers for
#ozsinglecell25
. May 21-23, Sydney Registrations opening soon
www.ozsinglecell.com
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reposted by
Alicia Oshlack
Shalin H. Naik
10 months ago
@ozsinglecell.bsky.social
#OzSingleCell25
has a new website
www.ozsinglecell.com
See the current list of invited speakers and stay tuned for registration details. Sponsors reach out to
[email protected]
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This will be my first international conference since 2019 π
add a skeleton here at some point
10 months ago
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reposted by
Alicia Oshlack
10 months ago
π¨ Keynotes at RECOMB-seq 2025! π¨ π Alicia Oshlack β computational transcriptomics
@aliciao.bsky.social
π Rayan Chikhi β sequencing data structures
@rayanchikhi.bsky.social
ποΈ Dates: April 24β25, 2025 π Seoul, South Korea
recomb-seq.github.io/speakers/
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reposted by
Alicia Oshlack
Robert Castelo
10 months ago
Two tenure-track positions on computational (
www.upf.edu/ca/web/biome...
) and quantitative (
www.upf.edu/ca/web/biome...
) biology at the Medicine and Life Sci. Dept. of
@upf.edu
. Come and join us to work in the unique environment of
@prbb.org
at the seafront of Barcelona! Deadline Jan 28. Please RP!!
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reposted by
Alicia Oshlack
Oz Single Cell
10 months ago
Did you βSave the dateβ? If so you may have noticed these are not the right dates!!! Please save 21-23 May
add a skeleton here at some point
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