@hmenager.bsky.social
📤 52
📥 81
📝 14
reposted by
Réseau français de la recherche reproductible
6 days ago
👏 Many thanks to everyone who took part in the Replication Games on Friday, October 3rd! 6 teams joined the challenge, 5 in person and 1 online, bringing curiosity and collaboration to every step and making this event a truly inspiring collective experience around reproducibility & open science.
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Congrats
@abretaud.bsky.social
add a skeleton here at some point
11 days ago
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reposted by
Open Bioinformatics Foundation
13 days ago
An open letter about the recent cuts at GigaScience:
www.open-bio.org/2025/09/30/2...
(open for signatures until the end of October)
#OpenScience
#OpenData
#GigaScience
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reposted by
Bioinformatics Open Source Conference (BOSC)
about 1 month ago
Check out our
#BOSC2025
report on
@f1000publishing.bsky.social
(It includes lots of pictures!) 🍐
f1000research.com/articles/14-...
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F1000Research Article: BOSC 2025, the 26th Bioinformatics Open Source Conference.
Read the latest article version by Nomi L. Harris, Karsten Hokamp, Jessica Maia, Hervé Ménager, Monia C Munoz-Torres, Tazro Ohta, Deepak Unni, Jason Williams, at F1000Research.
https://f1000research.com/articles/14-887/v1
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reposted by
Bioinformatics Open Source Conference (BOSC)
3 months ago
Tiffany Callahan chairing the "Ontologies and knowledge representation" session at
#BOSC2025
/
#BOKR2025
@bokr.bsky.social
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reposted by
Bioinformatics Open Source Conference (BOSC)
3 months ago
Harry Caufield (
@severaltimes.bsky.social
) giving a BioPortal update at
#BOSC2025
/
#BOKR2025
. You can try out BioPortal at
bioportal.bioontology.org
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reposted by
GigaScience Journal
3 months ago
Phill Read presenting RO-Crate in
#BOSC2025
, we’ve been increasing numbers of papers with associated RO-Crates, and have a summer internship working on it at the moment
#ISMBECCB2025
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Now at
#BOSC2025
BOKR joint session: Harry Caufield "BioPortal: a rejuvenated resource for biomedical ontologies". BioPortal is now 20!
3 months ago
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Last talk of the session, AutopeptideML2 from Raúl Fernández-Díaz at
#BOSC2025
BOKR.
3 months ago
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And now Gavin Farrell presents the DOME registry at
#BOSC2025
BOKR
3 months ago
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Barath Dandala presents BMFM-RNA at
#BOSC2025
BOKR joint session
3 months ago
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Favour James presents textToKnowledgeGraph in the joint
@bosc.bsky.social
#BOSC2025
/ BOKR session
3 months ago
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reposted by
Jason Williams
3 months ago
Honored to open day two of
#BOSC2025
and BOKR joint session at
#ISMBECCB2025
introducing
@cmungall.bsky.social
as our opening keynote: Open Knowledge Bases in the Age of Generative AI
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@susheelvarma.com
presented "The ELITE Portal: A FAIR Data Resource For Healthy Aging Over The Life Span" at
#ISMBECCB25
#BOSC2025
, reminding me of
github.com/pjotrp/bioin...
in advocacy of unix philosophy for legal interoperability. This is a recurring (and good) pattern at
@bosc.bsky.social
!
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GitHub - pjotrp/bioinformatics: Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics
Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics - pjotrp/bioinformatics
https://github.com/pjotrp/bioinformatics
3 months ago
0
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@monimunozto.bsky.social
presents Bridge2AI at
#ISMBECCB25
#BOSC2025
3 months ago
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reposted by
Bioinformatics Open Source Conference (BOSC)
3 months ago
#CWL
co-founder and project lead Michael Crusoe gave a moving tribute to Peter Amstutz, whose premature death was a great loss to the community.
#BOSC2025
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Link to publication you might have missed during the
@bosc.bsky.social
#BOSC2025
talk "Analytical code sharing practices in biomedical research" from Serghei Mangul:
doi.org/10.7717/peer...
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Analytical code sharing practices in biomedical research
Data-driven computational analysis is becoming increasingly important in biomedical research, as the amount of data being generated continues to grow. However, the lack of practices of sharing researc...
https://doi.org/10.7717/peerj-cs.2066
3 months ago
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From the
#BOSC2025
organising committee chat during Christine Orengo's keynote:"it was a very good idea to start BOSC with a TED talk ;)"
3 months ago
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reposted by
Varsha Khodiyar
3 months ago
@nomiharris.bsky.social
kicking off
#BOSC2025
at
#ISMBECCB2025
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reposted by
JOBIM 2025
4 months ago
🖥️🧬 Le comité d'organisation de
#JOBIM2025
remercie chaleureusement notre partenaire historique, l'Institut Français de Bioinformatique
@ifb-elixir-fr.bsky.social
, pour son soutien au congrès qui se tiendra du 8 au 11 juillet à Bordeaux. 1/3 ⤵️
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IFB - Institut Français de BioinformatiqueVisit our TwitterVisit our LinkedInVisit our YouTube channelclosebarsangle-double-upangle-double-downlinkedinfacebookpinterestyoutubersstwitterinstagramfacebo...
https://www.france-bioinformatique.fr/
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reposted by
IFB/ELIXIR-Fr
4 months ago
✨📰🗓️Thank you
@elixir-europe.org
, we look forward to welcoming you to the next All Hands Meeting in 2026!
#ELIXIR26
✨
@cnrs-idf-villejuif.bsky.social
@cnrsbiologie.bsky.social
@cea.fr
@inserm.fr
@inrae-france.bsky.social
add a skeleton here at some point
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reposted by
IFB/ELIXIR-Fr
4 months ago
JOBIM 2025 - Épisode 3/13 🚀 Venez découvrir notre poster « BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme », par Annie Lebreton, Erwan Corre et le consortium
#BYTE-Sea
!
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reposted by
IFB/ELIXIR-Fr
4 months ago
JOBIM 2025 - Épisode 4/13 🚀 Venez découvrir notre poster « Breaking Myths: The Reality of Galaxy’s Capabilities and Impact », qui sera présenté par Gildas Le Corguillé , Anthony Bretaudeau, Björn Grüning , le GT Galaxy et
@bebatut.bsky.social
!
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reposted by
BF Francis Ouellette
4 months ago
From
#Hal
| Assessing
#bioinformatics
software annotations:
bio.tools
case-study |
#OpenScience
#FAIR
🧬 🖥️ 🧪 🔓 ⬇️
hal.science/hal-05096849v1
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Assessing bioinformatics software annotations: bio.tools case-study
Reproducibility and reuse of digital bioinformatics resources are essential for the development<p>of open and cumulative science, in line with FAIR principles. To search and reuse bioinformatics tools...
https://hal.science/hal-05096849v1
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reposted by
David Monniaux
4 months ago
SAUVONS LE PALAIS DE LA DÉCOUVERTE
www.change.org/p/sauvons-le...
(Avis personnel : des musées comme le Grand Palais, il y en a plein à Paris. Il n'y a qu'un Palais de la Découverte.)
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Signez la pétition
Sauvons le Palais de la découverte
https://www.change.org/p/sauvons-le-palais-de-la-d%C3%A9couverte
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reposted by
IFB/ELIXIR-Fr
4 months ago
📣✨ Retrouvez les équipes de l’IFB à JOBIM Bordeaux du 8 au 11 juillet ! 🎉
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reposted by
Simon Cauchemez
4 months ago
New postdoc positions with a number of exciting epidemic modelling projects opening in our Unit at
@pasteur.fr
in beautiful Paris. Deadline for applications: 26th June.
research.pasteur.fr/en/job/postd...
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Postdoctoral positions in epidemic mathematical/statistical modelling - Research
Job description We are recruiting postdocs to contribute to research projects in the Mathematical Modelling of Infectious Diseases Unit, at Institut Pasteur in Paris. The candidates will be expected t...
https://research.pasteur.fr/en/job/postdoctoral-positions-in-epidemic-mathematical-statistical-modelling/
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reposted by
Galaxy Project
6 months ago
Two new tracks have been added to the Galaxy Training Academy 2025: Climate and Variant Analysis! Dive into climate data analysis or explore the world of variant analysis—both at your own pace, free, and fully supported via Slack channels during the event.
training.galaxyproject.org/training-mat...
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Galaxy Training Academy 2025
The Galaxy Training Academy is a self-paced online training event for beginners and advanced learners who want to improve their Galaxy data analysis skills. Over the course of one week, we offer a di...
https://training.galaxyproject.org/training-material/events/2025-05-12-galaxy-academy-2025.html#overview
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reposted by
Eduardo Rocha
6 months ago
New postdoc position in our lab (2 y+): evolutionary genomics of integrons and MGEs with focus on vibrio-phage interactions. Great environment
@pasteur.fr
for science, career building. Super collaborators
@celineloot.bsky.social
@amazeld.bsky.social
@fredoleroux.bsky.social
3 weeks to apply!
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reposted by
Bioinformatics Open Source Conference (BOSC)
6 months ago
We’re excited to share that Seqera (
bsky.app/profile/seqe...
) will be a Gold sponsor of
#BOSC2025
! Seqera is the driving force behind Nextflow, MultiQC, and the Seqera Platform — the modern biotech stack for scalable bioinformatics. Learn more on our sponsors page:
www.open-bio.org/events/bosc/...
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https://bsky.app/profile/seqera.io
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reposted by
ELIXIR Europe
6 months ago
🏃 Last push for
#BioHackEU25
project proposals! Don’t miss the great chance to work with 🙌 other
#bioinformaticians
. We welcomed project proposals 💡 focus on areas that support the work of ELIXIR, such as
#FAIRdata
,
#metadata
standards,
#ontologies
and more. 🔗 Submit by next Monday:
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Projects
BioHackathon Europe projects
https://loom.ly/5gopDeQ
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We are hiring an RE in Bioinfo and Biostats for the COPAFLICT project! It seeks to improve knowledge of viral hemorrhagic fevers and offer new perspectives for their diagnosis and treatment. Come and work with us at the Hub in
@institutpasteur.bsky.social
! See:
hub-jobs2025.pasteur.cloud
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Research engineer position(s) at the Bioinformatics and Biostatistics Hub of Institut Pasteur
https://hub-jobs2025.pasteur.cloud/
6 months ago
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reposted by
7 months ago
FREE hybrid event! Building the Future of Research Software: A SciCodes Symposium Apr 9, 2025 8:00am - 12:15pm Registration:
docs.google.com/forms/d/e/1F...
#astronomy
#openscience
#OpenSourceWeek
Want to make research s/w better? We want to hear your ideas! More info in 🧵:
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Registration for "Building the Future of Research Software: A SciCodes Symposium"
TL/DR: Use this form to register for the April 9, 2025 SciCodes Research Software Symposium: "Building the Future of Research Software". The survey has two sections: questions on general information a...
https://docs.google.com/forms/d/e/1FAIpQLSfTxuCJjmlAyc0S6odgVQdleYrwR1j_geE20HbVGJw5MXnOYA/viewform
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reposted by
Bioinformatics Open Source Conference (BOSC)
7 months ago
If you want to attend
#BOSC2025
but the registration fee is a barrier, consider applying for one of these financial support opportunities. Please note that the deadline for OBF Event Fellowship applications is *April 1*! More info:
www.open-bio.org/posts/financ...
@openbio.bsky.social
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reposted by
Jean-Yves Tinevez
7 months ago
The registration close Tuesday next week!
research.pasteur.fr/en/course/ne...
add a skeleton here at some point
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reposted by
Bioinformatics Open Source Conference (BOSC)
7 months ago
Thinking of going to
#BOSC2025
? Register for ISMB/ECCB 2025 by March 31 using code EARLY10 for 10% off *and* a free refund, if it turns out you can’t go after all, up to the day before the conference!
add a skeleton here at some point
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reposted by
ISCB News
7 months ago
🔔Only one week left to take advantage of the early bird registration rate for
#ISMBECCB2025!
Register by March 31 using code EARLY10 for 10% off your registration fee. Register here:
https://www.iscb.org/ismbeccb2025/register
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📢 permanent research engineer position as leader of the Hub Algorithmics & AI pole at the Institut Pasteur. Come and join us! More details on
research.pasteur.fr/en/job/perma...
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Permanent research engineer position as Head of Hub Algorithmics & AI pole - Research
The Hub of Bioinformatics and Biostatistics provides analytical support to research units and platforms at the Institut Pasteur. The Hub is committed to this mission through: As head of the Algorithm...
https://research.pasteur.fr/en/job/permanent-research-engineer-position-as-head-of-hub-algorithmics-ai-pole/
7 months ago
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reposted by
9 months ago
SciCodes (
scicodes.net
) is holding a half-day symposium on April 9, 2025 & you're invited!
scicodes.github.io/workshop-202...
We invite the research software engineering (RSEng), funder, & science communities to reflect on long term visions & aspirations for research s/w & computational science.
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https://scicodes.net/is
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