@tcamenzind.bsky.social
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📥 123
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fungal ecologist loving soil science
reposted by
Clement Tsui PhD 🇭🇰 🇨🇦
about 2 months ago
As a writer, teacher, AE, and reviewer, i share lots of their views. We need to work together to improve the system. The peer-review crisis: how to fix an overloaded system
www.nature.com/articles/d41...
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The peer-review crisis: how to fix an overloaded system
Journals and funders are trying to boost the speed and effectiveness of review processes that are under strain.
https://www.nature.com/articles/d41586-025-02457-2
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Happy to share this big piece on saprobic fungal traits and soil carbon cycling. Great collaboration in the SPP SoilSystems
@dfg.de
, with Damien Finn, Sören Thiele-Bruhn, Denise Vonhoegen,
@mrillig.bsky.social
and many others contributing to the study.
www.biorxiv.org/content/10.1...
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What are all these soil fungi doing? Complex carbon use ability as a predictive trait for fungal community functions
Fungal communities in soil play important roles in decomposition processes and soil organic carbon cycling. These communities are tremendously diverse, making it challenging to assign relevant functio...
https://www.biorxiv.org/content/10.1101/2025.07.11.664336v1
2 months ago
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Looks like a very useful tool, congrats to the group of Fernanda Pinheiro. A parallel R package would be nice :)
add a skeleton here at some point
2 months ago
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reposted by
Ákos T Kovács
3 months ago
Systematic pairwise co-cultures uncover predominant negative interactions among human gut bacteria -in BMC Microbiome
microbiomejournal.biomedcentral.com/articles/10....
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Systematic pairwise co-cultures uncover predominant negative interactions among human gut bacteria - Microbiome
Background Understanding pairwise bacterial interactions in the human gut is crucial for deciphering the complex networks of bacterial interactions and their contributions to host health. However, the...
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-025-02156-0
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This is awesome work on fungal lignin breakdown. And I like this "simplified" overview graph of lignin breakdown.
www.nature.com/articles/s41...
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Cross-kingdom comparative genomics reveal the metabolic potential of fungi for lignin turnover in deadwood - Nature Ecology & Evolution
This study uses comparative genomics and phylogenetics to analyse the distribution and evolution of key enzymes involved in the catabolism of lignin-related aromatic compounds in the bacterial and fun...
https://www.nature.com/articles/s41559-025-02785-6
3 months ago
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reposted by
Soil Organisms Journal
3 months ago
📢✨ONLINE FIRST!✨ How do anthropogenic drivers influence @soilbiodiversity change? Find out here!
@bartoszbartk.com
@eisenhauerlab.bsky.social
@mrillig.bsky.social
@christianristok.bsky.social
@doreenbabin.bsky.social
Jörg Römbke, Frank Galante, Christina Lachman
soil-organisms.org/index.php/SO...
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reposted by
Plants, People, Planet
3 months ago
Systematic mapping of experimental approaches to studying common
#mycorrhizal
networks in arbuscular mycorrhiza
#Review
by Anika Lehmann and
@mrillig.bsky.social
📖
nph.onlinelibrary.wiley.com/doi/10.1002/...
#LatestIssue
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Alptekin et al. suggest glomalin is a carbohydrate - glomalose. I wonder how this is different from EPS?
nph.onlinelibrary.wiley.com/doi/10.1111/...
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From glomalin to glomalose: unraveling the molecular identity of the MAb32B11 antigen
Glomalin, a substance produced by arbuscular mycorrhizal (AM) fungi, has well-documented benefits for plant and soil health, including water retention and soil aggregation. Glomalin quantification h...
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70253
4 months ago
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The Raunkiæran shortfalls to trait ecology. Great read on the limitations of trait concepts, and solutions. Led by Francesco de Bello
esajournals.onlinelibrary.wiley.com/doi/10.1002/...
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Raunkiæran shortfalls: Challenges and perspectives in trait‐based ecology
Trait-based ecology, a prominent research field identifying traits linked to the distribution and interactions of organisms and their impact on ecosystem functioning, has flourished in the last three....
https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecm.70018
4 months ago
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Very important topic on the functional significance of AM root colonization
nph.onlinelibrary.wiley.com/doi/10.1111/...
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What does colonisation tell us? Revisiting the functional outcomes of root colonisation by arbuscular mycorrhizal fungi
Click on the article title to read more.
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70284
4 months ago
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reposted by
Edith Hammer
4 months ago
Exciting postdoc opportunity with Milda Pucetaite and us in the Soilchip group: Become the spectroscopy expert in our multimodal fungal recognition project within our interdisciplinary VR research environment:)
lu.varbi.com/what:job/job...
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Postdoktor i utveckling av Ramanspektroskopi av jordmikrober
Särskild ämnesbeskrivning Jordmånen är grunden för vårt samhälle och vår livsmedelssäkerhet, men den är fortfarande en av de sista domänerna i vårt moderna liv som teknologiseras. Jordmikr
https://lu.varbi.com/what:job/jobID:824666/
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And congratulations to Yongxing Cui to this global analysis of microbial nutrient limitations, just published in
@pnas.org
Thank you for the fun collaboration
add a skeleton here at some point
4 months ago
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In case somebody is still here, getting really quiet in blue skies.. There is some new research on EPS production under different resource conditions in bacteria and fungi, led by Rebeca Leme Oliva. Great collaboration with Rainer Joergensen
bmcmicrobiol.biomedcentral.com/articles/10....
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Constituent of extracellular polymeric substances (EPS) produced by a range of soil bacteria and fungi - BMC Microbiology
Extracellular polymeric substances (EPS) produced by soil bacteria and fungi are crucial for microbial growth and provide many functions for the soil and its microbes. EPS composition may depend on mi...
https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-025-04034-z
4 months ago
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Wind dispersal shapes fungal communities, especially mushroom forming species. Nice study design by Peter Pellitier and
@mykophile.bsky.social
onlinelibrary.wiley.com/doi/10.1111/...
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Wind Patterns Influence the Dispersal and Assembly of North American Soil Fungal Communities
Wind is the primary vector of fungal spore dispersal. We document that windflow patterns, both the direction and magnitude, exhibit a significant influence on the composition and diversity of soil fu....
https://onlinelibrary.wiley.com/doi/10.1111/ele.70130
4 months ago
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When thinking about soil microbial necromass composition and biomarker significance, having good knowledge of microbial cell wall composition is crucial. Another great review on the fungal cell wall by Neil Gow
www.sciencedirect.com/science/arti...
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Fungal cell wall biogenesis: structural complexity, regulation and inhibition
The cell wall is the defining organelle of filamentous and yeast-like fungi. It is responsible for morphology, biotic and abiotic interactions and its…
https://www.sciencedirect.com/science/article/pii/S1087184525000325
5 months ago
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reposted by
Lucia Fuchslueger
5 months ago
The AmazonFACE project is offering post doc scholarships, based in Manaus, Brazil!
add a skeleton here at some point
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reposted by
Carlos Aguilar-Trigueros
6 months ago
Fungal mycelia are finally getting the spotlight they deserve! And how could they not? Their morphology is just stunning! We tracked our friend Absidia sp. forming this intricate exploratory mycelium, showcasing unique elongation and branching patterns
#fungi
#mycelium
#networks
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Nice take on SynComms by Delgado-Baquerizo et al.
nph.onlinelibrary.wiley.com/doi/10.1111/...
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Integrating ecological and evolutionary frameworks for SynCom success
Use of synthetic microbial communities (SynComs) is a promising approach that harnesses nature-based solutions to support soil fertility and food security, mitigate climate change impacts, and restor...
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.70112
6 months ago
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reposted by
Margaux Boeraeve
6 months ago
Interesting proposal to classify ectomycorrhizal fungi along a continuum from miners to absorbers. 👇🍄 An inspiring read, so much potential for studies testing this trait spectrum! 🤓 🧪🌍
add a skeleton here at some point
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So true
add a skeleton here at some point
6 months ago
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reposted by
Adam Frew
6 months ago
www.sciencedirect.com/science/arti...
Should we all be evaluating how we can better measure AM fungal colonisation? It should be very informative right? But is it? Probably depends what you're after. How well does it predict plant outcomes?
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Contrasting common measures of arbuscular mycorrhizal fungal root colonization
Estimating the abundance of arbuscular mycorrhizal fungi relies entirely on indirect methods, meaning all measures are associated with some variabilit…
https://www.sciencedirect.com/science/article/pii/S016770121930658X#f0020
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reposted by
Anthony Amend
10 months ago
RP PLS! Iʻm hiring 3 postdocs at U Hawaiʻi to study yeast diversity and evolution, marine fungi, and the genomics of microbiomes in experimental foodwebs. All of these projects have existing datasets and LATITUDE to pursue individual interests and "blue sky" ideas
www.dropbox.com/scl/fi/5d7u4...
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reposted by
Christian Kost
7 months ago
I proudly present a new review paper of my group that just came out in Trends in Microbiology
@cp-trendsmicrobiol.bsky.social
with Leonardo Ona and Shryli Shreekar Disentangling microbial interaction networks Open access link:
authors.elsevier.com/sd/article/S...
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ScienceDirect.com | Science, health and medical journals, full text articles and books.
https://authors.elsevier.com/sd/article/S0966-842X(25)00027-7
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Such an amazing study 👍
add a skeleton here at some point
7 months ago
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reposted by
Kyle Mason-Jones
8 months ago
New paper out with collaborators Tida Ge, Shuang Wang and others: Phages Affect Soil Dissolved Organic Matter Mineralization by Shaping Bacterial Communities
doi.org/10.1021/acs....
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Phages Affect Soil Dissolved Organic Matter Mineralization by Shaping Bacterial Communities
Viruses are considered to regulate bacterial communities and terrestrial nutrient cycling, yet their effects on bacterial metabolism and the mechanisms of carbon (C) dynamics during dissolved organic matter (DOM) mineralization remain unknown. Here, we added active and inactive bacteriophages (phages) to soil DOM with original bacterial communities and incubated them at 18 or 23 °C for 35 days. Phages initially (1–4 days) reduced CO2 efflux rate by 13-21% at 18 °C and 3–30% at 23 °C but significantly (p < 0.05) increased by 4–29% at 18 °C and 9–41% at 23 °C after 6 days, raising cumulative CO2 emissions by 14% at 18 °C and 21% at 23 °C. Phages decreased dominant bacterial taxa and increased bacterial community diversity (consistent with a “cull-the-winner” dynamic), thus altering the predicted microbiome functions. Specifically, phages enriched some taxa (such as Pseudomonas, Anaerocolumna, and Caulobacter) involved in degrading complex compounds and consequently promoted functions related to C cycling. Higher temperature facilitated phage-bacteria interactions, increased bacterial diversity, and enzyme activities, boosting DOM mineralization by 16%. Collectively, phages impact soil DOM mineralization by shifting microbial communities and functions, with moderate temperature changes modulating the magnitude of these processes but not qualitatively altering their behavior.
https://doi.org/10.1021/acs.est.4c08274
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reposted by
Ashish Malik
8 months ago
Interesting paper. This inference stood out for me: "Result suggests a fitness paradox whereby some bacteria can optimize fitness in soil by minimizing mortality rather than maximizing growth."
academic.oup.com/ismecommun/a...
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Dynamics of bacterial growth, and life-history tradeoffs, explain differences in soil carbon cycling due to land-use
Abstract. Soil contains a considerable fraction of Earth’s organic carbon. Bacterial growth and mortality drive the microbial carbon pump, influencing carb
https://academic.oup.com/ismecommun/advance-article/doi/10.1093/ismeco/ycaf014/7990715
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Such nice examples of creative processes in science. And a fun podcast 👍
add a skeleton here at some point
8 months ago
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Short reminder to everyone. Deadline for EGU abstract submissions is the 15th, still two days, easy 😅
#EGU25
add a skeleton here at some point
8 months ago
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besjournals.onlinelibrary.wiley.com/doi/full/10....
Interesting question addressed by the group of
@j-karst.bsky.social
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Soil fungal necromass in deciduous‐dominated boreal forest after 13 years of inorganic nitrogen addition
Read the free Plain Language Summary for this article on the Journal blog.
https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2435.14730
9 months ago
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reposted by
Franciska de Vries 🟥
9 months ago
I really like these Voices articles in One Earth, and am honoured to be part of this great collection on 'Understanding soil health'. In my opinion, a healthy soil is a healthy belowground half of an ecosystem.
www.cell.com/one-earth/fu...
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reposted by
Justine Karst 🇨🇦
9 months ago
Great summary by Lehmann &
@mrillig.bsky.social
of evidence base for CMNs in AM systems. Some big data gaps revealed. Despite all the hype/buzz, CMN studies make up <2% of mycorrhizal research. Sensible recommendations provided to move forward. 👍
nph.onlinelibrary.wiley.com/doi/full/10....
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Systematic mapping of experimental approaches to studying common mycorrhizal networks in arbuscular mycorrhiza
Common mycorrhizal networks (CMN) capture the imagination of researchers and the public alike and have played a large role in communicating about mycorrhiza in general. With many of the claims about ...
https://nph.onlinelibrary.wiley.com/doi/full/10.1002/ppp3.10618?campaign=wolearlyview
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Time to sort your conferences for next year.
#EGU25
abstract submission deadline is the 15th of January. Come join us 🦠
add a skeleton here at some point
9 months ago
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reposted by
Dr. Sydney Glassman
10 months ago
My department is hiring a fungal biologist!
aprecruit.ucr.edu/JPF01990
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Assistant Professor in Fungal Biology
University of California, Riverside is hiring. Apply now!
https://aprecruit.ucr.edu/JPF01990
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Very interesting outreach article in the "Berliner Zeitung" by
@joanabergmann.bsky.social
and her team. German peatlands as carbon sinks
www.berliner-zeitung.de/mensch-metro...
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Ackerbau auf Schwamm: Wie es mit der Wiedervernässung in Paulinenaue im Havelland vorangeht
Moor ist ein regelrechter CO₂-Sauger. Ein Besuch in Paulinenaue im Havelland, wo Forscher das Wasser steigen lassen und Landwirte ausprobieren, was dann noch wächst.
https://www.berliner-zeitung.de/mensch-metropole/ackerbau-auf-schwamm-wie-es-mit-der-wiedervernaessung-in-paulinenaue-im-havelland-vorangeht-li.2277460
10 months ago
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reposted by
Andreas Richter
10 months ago
Excited to share our new study in
@naturecomms.bsky.social
showing that soil fungi, unlike bacteria, remain fully active under severe drought conditions, and also invest in synthesis of storage compounds. Led by the amazing
@loutsi.bsky.social
and Alberto Canarini. Thread 1/2
rdcu.be/d1Tyg
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Soil fungi remain active and invest in storage compounds during drought independent of future climate conditions
Nature Communications - How climate change will impact microbial community growth is unclear. Here, the authors use a field experiment with varying global change factors, finding fungal growth more...
https://rdcu.be/d1Tyg
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Do you like soil, microbes and beautiful cities? Join us at
#EGU25
in Vienna for our session SSS4.1 "Microbial physiology shapes soil biogeochemical processes across scales". Organized with
@edithhammer.bsky.social
and
@kaleklett.bsky.social
. Happy to welcome François Maillard as invited speaker
10 months ago
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reposted by
Dr. Jennifer Pett-Ridge
10 months ago
Buried paleosols hold a LOT of
#Carbon
. What happens when they are exposed? McMurtry et al. show “paleosols defy expectations of C content and reactivity” Getting to the root of the problem: Soil carbon and microbial response...
www.sciencedirect.com/science/arti...
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Getting to the root of the problem: Soil carbon and microbial responses to root inputs within a buried paleosol along an eroding hillslope in southwestern Nebraska, USA
Large quantities of soil carbon (C) can persist within paleosols for millennia due to burial and subsequent isolation from plant-derived inputs, atmos…
https://www.sciencedirect.com/science/article/pii/S0038071724002384
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reposted by
Katie Field
11 months ago
Super cool new paper in
@funecology.bsky.social
led by Emily Magkourilou showing how plant pests influence the movement of fungal-acquired nutrients & plant-fixed carbon through mycorrhizal networks - we were really excited by what we found! Check it out here:
doi.org/10.1111/1365...
🧵(spoilers)
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Plant pests influence the movement of plant‐fixed carbon and fungal‐acquired nutrients through arbuscular mycorrhizal networks
Read the free Plain Language Summary for this article on the Journal blog.
https://doi.org/10.1111/1365-2435.14693
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reposted by
Kristin Aleklett Kadish
11 months ago
Are you interested in how microbial physiology shapes biogeochemical processes? Join us in Vienna this spring in our session at EGU25 🍄🍄🟫🦠🧫🔬🍂🍁🌱🌍
@edithhammer.bsky.social
@tcamenzind.bsky.social
Featuring
@franfungi.bsky.social
meetingorganizer.copernicus.org/EGU25/sessio...
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Session SSS4.1
https://meetingorganizer.copernicus.org/EGU25/session/51946
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Such a happy moment we have been working on for so long. Our article "Towards establishing a fungal economics spectrum in soil saprobic fungi" is now online, open access, in @NatureComms
nature.com/articles/s41...
based on trait data the whole @mrillig group collected since 2014
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Towards establishing a fungal economics spectrum in soil saprobic fungi - Nature Communications
Challenges in obtaining empirical trait data hinder the development of trait-based frameworks for soil microbes. Here, the authors analyse traits of saprobic fungal isolates from a grassland site to p...
https://nature.com/articles/s41467-024-47705-7
over 1 year ago
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You can now find our study presenting refined conversion factors for soil fungal biomarkers online - open access
link.springer.com/article/10.1...
Sven Marhan, Stefan Hempel and others from DFG SPP_SoilSystems
over 1 year ago
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This interesting study led by Rebeca Oliva and Rainer Joergensen just came out. It shows that the amino sugars galactosamine and mannosamine represent potential biomarkers for microbial EPS in soil (DFG SPP SoilSystems)
academic.oup.com/ismecommun/a...
over 1 year ago
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reposted by
Ralf Reski
almost 2 years ago
W3 Professorship in Forest botany and tree physiology. Göttingen, Germany.
#plantscijobs
#plantscijob
www.academics.de/jobs/w3-prof...
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W3 Professorship in Forest botany and tree physiology (f/m/d) - Georg-August-Universität Göttingen
Georg-August-Universität Göttingen bietet Stelle als W3 Professorship in Forest botany and tree physiology (f/m/d) in Göttingen - jetzt bewerben!
https://www.academics.de/jobs/w3-professorship-in-forest-botany-and-tree-physiology-f-m-d-georg-august-universitaet-goettingen-goettingen-1080094?mj_campaign=nl_ref&mj_content=zeitde_text_link_x&mj_medium=nl&mj_source=int_zonaudev_&user_token=SFMyNTY.g3QAAAACZAAEZGF0YWIAAe83ZAAGc2lnbmVkbgYAu3rpa4sB.0UL09mXPl6XR7yEU7Hv-A6yCIAWP_-YmI0lO8EQkDIo&utm_campaign=jobnewsletter&utm_medium=nl&utm_source=2023-10-26&wt_zmc=nl.int.zonaudev.jobnewsletter.2023-10-26.acade.3.job_list.topjob#SPCoQWdNRlRFOD0sLA==
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reposted by
Noah Fierer
almost 2 years ago
Lots of papers examining how microbes are influenced by soil properties. Here we flip that around and ask how microbes can influence the soil environment. Fun paper to write with Laurent Philippot, Claire Chenu,
@mrillig.bsky.social
and Andreas Kappler
www.nature.com/articles/s41...
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The interplay between microbial communities and soil properties - Nature Reviews Microbiology
In this Review, Philippot et al. explore how soil microorganisms can affect the physical and chemical properties of soil and discuss the ecological and evolutionary consequences of these microbially d...
https://www.nature.com/articles/s41579-023-00980-5
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Interesting concepts to connect carbon-use and energy-use efficiency in soil microbes. Structural carbon can be recycled, while energy can only be used once and is needed constantly. Wang & Kuzyakov
onlinelibrary.wiley.com/doi/10.1111/...
almost 2 years ago
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reposted by
Edith Hammer
almost 2 years ago
Come work with us🤩! Postdoc in microbial ecology – investigating soil biodiversity in different farm types in Sweden molecularly and morphologically via
#soilchips
– embedded in an interdisciplinary network at @BECC_sweden @LundUniversity
lu.varbi.com/en/what:job/...
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