Pereda Lab
@peredalab.bsky.social
📤 78
📥 114
📝 7
Structural Molecular Biology | Cell Adhesion and Signaling Also @
[email protected]
reposted by
Pereda Lab
Jon Humphries
6 days ago
Therapeutic Use of Integrin Signaling in Melanoma Cells: Physical Link with the Extracellular Matrix (ECM)
www.mdpi.com/2072-6694/17...
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https://www.mdpi.com/2072-6694/17/18/3037
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Pereda Lab
CERN
8 days ago
Why engage youth in science? 🧑🎓 Hear from the directors and special guests –
#CERN
Director-General Fabiola Gianotti, architect Renzo Piano, and John Elkann, President of Fondazione Agnelli – on why it is important to get the young generation interested in science.
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Pereda Lab
Josh Hardy
12 days ago
I am thrilled to release ProteinDJ: a high-performance and modular protein design pipeline. Our open-source workflow incorporates
#RFdiffusion
,
#ProteinMPNN
,
#FAMPNN
,
#AlphaFold2
and
#Boltz-2
. It is a fast, free, and fun way to design proteins (1/5)
doi.org/10.1101/2025.09.24.678028
#proteindesign
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Pereda Lab
Naba Lab UIC
15 days ago
“The integrin odyssey – a journey full of fundamental discoveries” by Fässler and Sonnenberg in
@jcellsci.bsky.social
, worth a read!
journals.biologists.com/jcs/article/...
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The integrin odyssey – a journey full of fundamental discoveries
Summary: This Perspective highlights the key discoveries in integrin research that laid the foundation for a successful field.
https://journals.biologists.com/jcs/article/138/18/jcs263999/369272/The-integrin-odyssey-a-journey-full-of-fundamental
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Pereda Lab
Journal of Cell Biology
16 days ago
Kowalczyk et al. provide a historical perspective on the discovery of
#desmosomes
and how imaging technologies have advanced our understanding of this adhesive intercellular junction.
rupress.org/jcb/article/...
📕 In our Intermediate Filaments collection:
rupress.org/jcb/collecti...
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Pereda Lab
Liz Kurtz
28 days ago
When you had quals & published your first paper!✨behind✨SO PROUD to share we published our first piece of the CasL story!!
journals.biologists.com/jcs/article/...
The scaffold protein CasL restrains membrane blebbing and promotes T cell migration | Journal of Cell Science | The Company of Biologists
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The scaffold protein CasL restrains membrane blebbing and promotes T cell migration
Highlighted Article: The scaffold CasL restricts membrane blebbing by controlling the balance of actin polymerization and myosin contractility during integrin-dependent T cell migration.
https://journals.biologists.com/jcs/article/138/14/jcs263792/368616/The-scaffold-protein-CasL-restrains-membrane
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Pereda Lab
cryoEM papers
27 days ago
BaR-based cryo-EM of platelet integrin αIIbβ3
pubmed.ncbi.nlm.nih.gov/40938611/
#cryoem
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Pereda Lab
Instruct-ERIC
29 days ago
Have you applied for the Instruct-ERIC Industry Co-fund R&D call? Get up to €30,000 matched by industrial partners for your technology development project in structural biology. Find out more about the call and apply here -
instruct-eric.org/submit-call/...
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Pereda Lab
Jon Humphries
29 days ago
Basement membranes at a glance
journals.biologists.com/jcs/article/...
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Basement membranes at a glance
Summary: Basement membranes (BMs) are dynamic assemblies of secreted proteins uniquely tailored for diverse tissue supporting roles. Here, we review our current understanding of BM composition, format...
https://journals.biologists.com/jcs/article/138/17/jcs263947/369053/Basement-membranes-at-a-glance
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Pereda Lab
Jeremy Hollis
about 1 month ago
So excited to see the first part of my thesis work with
@harmitmalik.bsky.social
and
@melodygcampbell.bsky.social
in print!
www.science.org/doi/10.1126/...
We have a bit of evolution and a whole lotta structure to figure out how new protein domains work
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Molecular exaptation by the integrin αI domain
An ancient protein domain insertion seamlessly preserved conformational signaling while providing a novel surface for adaptation.
https://www.science.org/doi/10.1126/sciadv.adx9567
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Pereda Lab
Jon Agirre
about 1 month ago
Just a few days left to register for the next Diamond/CCP4 Data Collection and Structure Solution Workshop! This is an excellent training course delivered at a unique location and close to the most wonderful time of the year. It also has LOTS of tutors per student!
www.ccp4.ac.uk/schools/DLS-...
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DLS/CCP4 Workshop 2025
https://www.ccp4.ac.uk/schools/DLS-2025/#/
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Pereda Lab
Thomas Iskratsch
about 1 month ago
🎉It's finally out! Mechanosensitive biochemical imprinting of the talin interaction with DLC1 regulates RhoA activity and cardiomyocyte remodeling | Science Advances
www.science.org/doi/10.1126/...
- Amazing work Emilie, Ioannis and all co-authors and collaborators!
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Mechanosensitive biochemical imprinting of the talin interaction with DLC1 regulates RhoA activity and cardiomyocyte remodeling
Cardiomyocytes’ sensing of extracellular matrix stiffness is imprinted in the talin interactome and regulates their phenotype.
https://www.science.org/doi/10.1126/sciadv.adt6083
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Pereda Lab
Roland Dunbrack 🏳️🌈
about 1 month ago
Honored to receive the 2026 DeLano Award from
@asbmb.bsky.social
. Warren wrote PyMOL which I spend several hours a day with -- a hero for open & accessible software. Helen Berman, another of my heroes, nominated me (with help from Ruth Nussinov & Janet Thornton), three women I admire tremendously.
add a skeleton here at some point
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Pereda Lab
cryoEM papers
about 1 month ago
Cryo-EM structures of CRAF/MEK1/14-3-3 complexes in autoinhibited and open-monomer states reveal features of RAF regulation
pubmed.ncbi.nlm.nih.gov/40890113/
#cryoem
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Pereda Lab
Structural Biology
about 1 month ago
M. Carmen Salinas-Garcia et al.: Understanding domain swapping in the c-Src SH3 domain through hinge-loop mutagenesis
##SH3Domains
##DDomainSwapping
##HingeLoop
@ualmeria@canalugr...
##IUCr
https://journals.iucr.org/paper?S2059798325006977
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Understanding domain swapping in the c-Src SH3 domain through hinge-loop mutagenesis
The role of the hinge loop and the open interface in the 3D domain swapping of the c-Src SH3 domain is reported.
https://journals.iucr.org/paper?S2059798325006977
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Pereda Lab
Ben Goult
about 1 month ago
Excited to share our new preprint in
@biorxiv-neursci.bsky.social
"Cyclin-dependent kinase-like 5 (CDKL5) binds to talin and is anchored at the postsynaptic density via direct interaction with PDZ domains" Instead of a 🧵 the paper is summarised in this video.
www.biorxiv.org/content/10.1...
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Pereda Lab
Martin Pacesa
about 1 month ago
Exciting to see our protein binder design pipeline BindCraft published in its final form in @Nature ! This has been an amazing collaborative effort with Lennart, Christian,
@sokrypton.org
, Bruno and many other amazing lab members and collaborators.
www.nature.com/articles/s41...
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Pereda Lab
IRNASA-CSIC
about 2 months ago
📰 New paper out in 'The FEBS Journal'! This study by Mónica Balsera, from
#IRNASA-CSIC
, reveals a novel mechanism in cyanobacteria. 🔗
febs.onlinelibrary.wiley.com/doi/10.1111/...
#Cyanobacteria
#RedoxBiology
#StructuralBiology
#Microbiology
#Biochemistry
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FEBS Press
Ferredoxin-dependent flavin thioredoxin reductases (FFTRs) regenerate reduced thioredoxin, sustaining dithiol–disulfide exchange reactions that regulate protein activity in select organisms. In cyano...
https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.70210
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Pereda Lab
Journal of Cell Science
about 2 months ago
Why would anyone want to be a scientist? Check out our new Essay from Martin Schwartz:
journals.biologists.com/jcs/article/...
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Pereda Lab
Eric Topol
about 2 months ago
Platelets sequester and harbor cell-free tumor DNA, which could enhance our ability to make early, microscopic diagnosis of cancer
@science.org
science.org/doi/10.1126/...
science.org/doi/10.1126/...
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Pereda Lab
cryoEM papers
2 months ago
Structural basis of MPL activation by thrombopoietin
pubmed.ncbi.nlm.nih.gov/40766813/
#cryoem
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Pereda Lab
Instruct-ERIC
2 months ago
We are delighted to announce that Instruct has added a Centre in Germany, and expanded its existing Centre in Spain with new facilities, services, and technologies! See the list below - all new services will be available for funded access soon! Watch this space!
instruct-eric.org/news/new-ger...
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New German Centre and Expanded Spanish Centre Approved
Instruct-ERIC is a pan-European research infrastructure in structural biology, making high-end technologies and methods available to all European researchers.
https://instruct-eric.org/news/new-german-centre-and-expanded-spanish-centre-approved/
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Pereda Lab
MRC Laboratory of Molecular Biology
2 months ago
The LMB recently hosted a symposium to mark 50 years since Richard Henderson and Nigel Unwin published the structure of bacteriorhodopsin, the first 3D structure of a protein determined by
#cryoEM
. Read about the event and find more photos here:
www2.mrc-lmb.cam.ac.uk/the-structur...
#LMBNews
🧪🔬
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Pereda Lab
Basil Greber
2 months ago
Now out in Structure: Paper on high-resolution
#cryoEM
using the 100 kV Tundra cryo-TEM by Dimple Karia, Adrian Koh,
@abhaykot.bsky.social
,
@lingboyu.bsky.social
,
@landerlab.bsky.social
and many others. Happy to have contributed to this effort. Check it out:
www.sciencedirect.com/science/arti...
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Sub-3 Å resolution protein structure determination by single-particle cryo-EM at 100 keV
Cryoelectron microscopy (cryo-EM) has transformed structural biology by providing high-resolution insights into biological macromolecules. We report s…
https://www.sciencedirect.com/science/article/pii/S0969212625002552
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Pereda Lab
Journal of Cell Science
3 months ago
In this Opinion article, Yu-Ming Lu discusses multiple important studies on microtubule acetylation with the aim of clarifying the actual role of α-tubulin K40 acetylation, a major tubulin post-translational modification.
journals.biologists.com/jcs/article/...
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Pereda Lab
Ben Goult
3 months ago
This is amazing, art work based on The MeshCODE Theory.
www.davinci-project.com/collection/a...
Thanks Nash Cruz and Mireya Vazquez-Prada
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A Mechanical Basis for Memory — da Vinci
https://www.davinci-project.com/collection/a-mechanical-basis-for-memory
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Pereda Lab
Kieran Didi
3 months ago
Very excited about our latest all-atom generative model proteina, check out the project page (
research.nvidia.com/labs/genair/...
) and stay tuned for the code release soon!
add a skeleton here at some point
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Pereda Lab
Journal of Cell Biology
3 months ago
Paumier, Sauvanet, Gigant
@mikicalab.bsky.social
highlight work from Muñoz-Hernández, Xu et al
@mike-wieczorek.bsky.social
(
rupress.org/jcb/article/...
) which describes new insight into the means by which NEDD1 protein recruits the γ-TuRC to microtubule-organizing centers
rupress.org/jcb/article/...
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Pereda Lab
Pablo Alcón
3 months ago
A tribute to Pedro Cuatrecasas, the Spaniard who (whilst working in the US) co-invented affinity chromatography.
add a skeleton here at some point
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Pereda Lab
Richard Sever
3 months ago
NIH Director say journals "bully scientists into paying large fees". No. Academia is a prestige economy in which scientific leadership chose to make journals the currency & Gold OA was deemed 'the way'. Publishers just cashed in; you don't have to pay $10K
www.insidehighered.com/news/governm...
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NIH Plans to Cap Publisher Fees, Dilute “Scientific Elite”
Director of the National Institutes of Health says that capping research journals’ open-access fees will help rein in the $19 billion academic publishing industry and bolster scientific debate.
https://www.insidehighered.com/news/government/science-research-policy/2025/07/10/nih-plans-cap-publisher-fees-dilute-scientific
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Pereda Lab
3 months ago
🏆 Congrats to Michal Dibus for winning the daily poster prize from FEBS Open Bio today with his poster "Tensin 1 phase separation in regulation of integrin adhesion dynamics"👏
@midibu.bsky.social
@ivaskalab.bsky.social
#FEBS2025
#FEBSCongress2025
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Pereda Lab
Juha Huiskonen
3 months ago
In our latest preprint on bioRxiv, we present the in situ structure of the human gap junction at 14 Å resolution using cryo-ET. The structure provides a blueprint for investigating how connexin regulation shapes intercellular communication in health and disease.
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Pereda Lab
Centro Nacional de Biotecnología (CNB)
4 months ago
📰 El Profesor de Investigación del CNB-CSIC José María Carazo recibió ayer el Premio Manuel Rico – BRUKER de la Sociedad de Biofísica de España por su destacada trayectoria en biofísica estructural. 🔗 Lee la noticia completa en nuestra web:
bit.ly/PremioMR25
@csic.es
@instructi2pc.bsky.social
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Pereda Lab
Jon Agirre
3 months ago
Together with Toyin Asojo, Graham Chakafana and Craig Smith, we have recently edited a focused issue on 'Empowering education through structural genomics', featuring the work of both undergrads and high school students – watch Toyin interview Aruesha, Aryana & Raymond
www.youtube.com/watch?v=KJkN...
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Structures of Trichomonas vaginalis macrophage migratory inhibitory factor
YouTube video by International Union of Crystallography
https://www.youtube.com/watch?v=KJkN9jKnG70
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Pereda Lab
Nogales Lab
3 months ago
So proud of the smashing success of the International Course in Biophysics co-organized with my
@berkeleymcb.bsky.social
colleague Carlos Bustamante and University of Salamanca
@usaloficial.bsky.social
biophysal.org
Course ends with a Keynote from Nobel Laureate Richard Henderson🥇
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BioPhySAL - First Salamanca International Advanced Biophysics and Structural Biology Course
First Summer International Advanced Biophysics and Structural Biology Course. Eva Nogales - Carlos Bustamante.
https://biophysal.org
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Pereda Lab
Alana Cowell 🔬
3 months ago
I made a little doodle this weekend showing how I felt when I saw my first Titan Krios in person. That was quite a few years ago now, amazing how much has changed in the cryoEM field since then.
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Pereda Lab
Pablo Alcón
3 months ago
Wish I could be there! An unmissable chance to hear Richard Henderson speak in the magical setting of Fonseca, Salamanca. ❄️⚡🔬
add a skeleton here at some point
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📢 Keynote of BioPhySal course by Prof Richard Henderson 📍University of Salamanca, Hospederia Fonseca 📆Saturday, July 5th 🕗7:30pm Free entrance, Open to the public
@usaloficial.bsky.social
@ciccancer.bsky.social
@interibfg.bsky.social
@cnb-csic.bsky.social
LUMES-USAL
3 months ago
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Pereda Lab
epithelial mechanics fan club
3 months ago
Fiore, V. F., Almagro, J., & Fuchs, E. (2025). Shaping epithelial tissues by stem cell mechanics in development and cancer. Nature reviews. Molecular cell biology, 26(6), 442–455.
#EpithelialMechanicsReview
buff.ly/wS0nzdW
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Pereda Lab
IQF-CSIC
3 months ago
#IQFSeminar
#IQFSeminario
Understanding bacterial immune systems and its allosteric mechanisms: From basics to therapies 🗣️Guillermo Montoya 🗓️Friday, 4 July 🕛 12:00 📍#iqf
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Pereda Lab
ONI
3 months ago
ONI has landed in Salamanca 🇪🇸 Excited to be part of the first-ever
#BioPhySAL2025
at the University of Salamanca! Come by our table to see how super-resolution is transforming single-molecule imaging.
#SuperResolution
#Microscopy
#ONIImaging
#Biophysics
#StructuralBiology
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Pereda Lab
Martin Pacesa
3 months ago
We have written up a tutorial on how to run BindCraft, how to prepare your input PDB, how to select hotspots, and various other tips and tricks to get the most out of binder design!
github.com/martinpacesa...
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Pereda Lab
Guillaume Jacquemet
3 months ago
- A postdoc to work on cancer extravasation (4-year project). - A postdoc help in completing Filopodia-related lab projects (2-year). - Multiple Marie Curie postdoc positions that will open in the fall. - We will open a 5-year position to cover my teaching (70% research and 30% teaching).
add a skeleton here at some point
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Pereda Lab
ChimeraX
4 months ago
UCSF ChimeraX version 1.10 has been released!
www.rbvi.ucsf.edu/chimerax/dow...
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Download UCSF ChimeraX
https://www.rbvi.ucsf.edu/chimerax/download.html
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Pereda Lab
Joachim Frank
4 months ago
structure prediction is not science if not experimentally validated. period
add a skeleton here at some point
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Pereda Lab
cryoEM papers
4 months ago
CryoDRGN-AI: neural ab initio reconstruction of challenging cryo-EM and cryo-ET datasets
pubmed.ncbi.nlm.nih.gov/40571741/
#cryoem
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Pereda Lab
Centro de Investigación del Cáncer (CSIC-USAL-FICUS)
4 months ago
¡Enhorabuena a todo el equipo que ha hecho posible que el máster “Biología y Clínica del Cáncer” haya sido una vez más reconocido por El Mundo como el segundo mejor de España en el área de biociencias! Más información
www.elmundo.es/especiales/m...
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Pereda Lab
Centro Nacional de Biotecnología (CNB)
4 months ago
This Sunday, June 29,
@usaloficial.bsky.social
will host a biophysics symposium featuring top-tier speakers. The event is aimed at university students and open to the general public. One of the talks will be given by Eva Nogales
@nogaleslab.bsky.social
JAE-Chair of
@csic.es
at the
#CNB_CSIC
.
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Pereda Lab
Rainero lab
4 months ago
Vimentin intermediate filaments coordinate actin stress fibers and podosomes to determine the extracellular matrix degradation by macrophages
www.cell.com/developmenta...
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Vimentin intermediate filaments coordinate actin stress fibers and podosomes to determine the extracellular matrix degradation by macrophages
Huang et al. demonstrate that the intermediate filaments protein vimentin orchestrates actin stress fibers and podosomes, thereby facilitating efficient extracellular matrix (ECM) degradation via inte...
https://www.cell.com/developmental-cell/fulltext/S1534-5807(25)00036-X
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