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@peredalab.bsky.social
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Structural Molecular Biology | Cell Adhesion and Signaling Also @
[email protected]
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Pereda Lab
Guillaume Jacquemet
7 days ago
I am delighted to introduce our new Centre of Excellence in Immune-Endothelial Interfaces (IMMENs) funded by the Research Council of Finland.
www.helsinki.fi/en/researchg...
I will be recruiting two postdocs early next year. One image analyst and one biologist interested in working on lymphatics!
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Centre of Excellence in Immune - Endothelial Interfaces (IMMENs) | University of Helsinki
The overarching aim of IMMENs, a Research Council of Finland funded Centre of Excellence, is to understand how local immune responses are regulated at the lymphatic endothelium-immune cell interface.
https://www.helsinki.fi/en/researchgroups/immune-endothelial-interfaces
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Raimon Sunyer
10 days ago
Talin didn’t evolve for integrins... integrins evolved for talin 🤯 pN force coupling via talin is ancient, conserved from amoebae to humans; signaling came later. Read this amazing paper here 👇🏽
www.nature.com/articles/s41...
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Talin force coupling underlies eukaryotic cell-substrate adhesion - Nature Communications
Talin is a well-known regulator of cell adhesion and intracellular force transmission in animals. Here, the authors demonstrate that talin’s mechanical function is evolutionarily conserved and already established in unicellular eukaryotes.
https://www.nature.com/articles/s41467-025-67354-8
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Jóvenes Investigadores SBE
11 days ago
🚨ATENCIÓN🚨 Abrimos la convocatoria al premio JI-SBE a la mejor tesis de Biofísica de 2025. Si has defendido tu tesis en 2025 y es del ámbito de la biofísica, esta es tu oportunidad‼️ Consulta las bases del premio para más información:
sbe.es/wp-content/u...
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Jon Agirre
15 days ago
New interview alert! We had a chat with Mike Cianfrocco, Scott Stagg and Jan-Hannes Schäfer about their CryoSift tool – details in the thread.
www.youtube.com/watch?v=ROlc...
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CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection
YouTube video by International Union of Crystallography
https://www.youtube.com/watch?v=ROlc_eueYfg
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Instruct-ERIC
15 days ago
Calling researchers in Spain! Don't miss out on the Instruct-ES Workshop, the first meeting of the expanded Spanish Centre in Instruct-ERIC Find out all about the technologies and latest research taking place at Instruct Centre Spain - register here 👇
instruct-eric.org/events/integ...
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Pereda Lab
Protein Data Bank in Europe (PDBe)
16 days ago
🚀 Update Alert The new PDBe-KB Ligand pages are live with a cleaner layout, intuitive tabs, and a brand-new onboarding tour to help you get started. Explore here 👉
pdbe.org/chem/STI
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Quanta Magazine
16 days ago
At 26, during the Reign of Terror in France, Jean-Baptiste Joseph Fourier narrowly avoided the guillotine. A decade later, he made a discovery that changed mathematics forever.
www.quantamagazine.org/what-is-the-...
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Áreas Científico-Técnicas VAACT-CSIC
22 days ago
🚀 OPEN PhD POSITIONS in
#SyntheticBiology
! Join
#SYNBIO-CSIC
, an EU-funded doctoral programme by CSIC: ✔ 20 positions ✔ Cutting-edge research in
#EngineeringBiology
✔ Interdisciplinary training for future leaders ➡️https://lifehub.csic.es/synbio-cofund/
#MSCACOFUND
#SYNBIO
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Sophien Kamoun
23 days ago
I just published: ERC-Plus: jackpot science or missed chance to fix academia? My reflections on ERC-Plus, Europe’s newest ultra-competitive research grant and what it tells us about the academic culture we’re building.
medium.com/p/erc-plus-j...
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ERC-Plus: jackpot science or missed chance to fix academia?
My reflections on ERC-Plus, Europe’s newest ultra-competitive research grant and what it tells us about the academic culture we’re…
https://medium.com/p/erc-plus-jackpot-science-or-missed-chance-to-fix-academia-c915cc9ae89a?source=social.tw
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Mario González-Jiménez
24 days ago
Checking out the most famous steps in the history of science at night
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Jon Humphries
27 days ago
Hemidesmosomes regulate epidermal differentiation during embryogenesis
www.biorxiv.org/content/10.1...
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Hemidesmosomes regulate epidermal differentiation during embryogenesis
In skin epidermis, integrins mediate adhesion of basal keratinocytes to the underlying basement membrane. While high expression of integrins has been correlated with stemness, there is limited direct ...
https://www.biorxiv.org/content/10.1101/2025.10.01.679770v1
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Pereda Lab
Carsten Schulte
27 days ago
Completely wrong direction imo. It would be better and more efficient to increase funding rates of existing schemes funding more of the already fundable, great ideas for projects that are out there instead of yet another call with, most probably, less than 10% success rate.
add a skeleton here at some point
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Pereda Lab
Guillaume Jacquemet
27 days ago
Your periodic reminder that science is not done by a few selected "stars scientists". Science is done by hundred of thousands. Siloed money mean a few flashy discoveries and a lot of waste. Want to change things? Make funding accessible and stop funding calls with less than 2% success rate.
add a skeleton here at some point
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IBFG
29 days ago
🎤 Entrevista completa sobre el Proyecto MicroMundo🦠, desarrollado en el IBFG, con nuestros investigadores🧑🔬 Beatriz Santos y Ramón Santamaría para La 8 Salamanca📺 Ya disponible 👉
www.facebook.com/share/v/1GPc...
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Pereda Lab
Manuel Lera-Ramirez
about 1 month ago
#OpenCloning
is a an Open Source alternative to SnapGene/Benchling that supports automation and integration with other software ✅ Free 🔓 Open Source 🧬 More cloning methods than SnapGene 🤖 Can be automated with python 👨🔬 Built by a researcher — for researchers! 👉 Check it out at
opencloning.org
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Cell Biology J-Club
about 1 month ago
Optogenetic control of mechanotransduction based on light-induced homodimerization of talin url:
journals.biologists.com/jcs/article-...
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Optogenetic control of mechanotransduction based on light-induced homodimerization of talin
Integrin-based adhesion complexes serve as primary sites for actomyosin force transmission to the extracellular matrix, providing traction that drives cell mechanical responses including adhesion, mig...
https://journals.biologists.com/jcs/article-abstract/doi/10.1242/jcs.264110/369927/Optogenetic-control-of-mechanotransduction-based
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Pereda Lab
Josh Hardy
about 1 month ago
I am pleased to announce the release of ProteinDJ v2! This is a major update that integrates BindCraft into the pipeline as an alternative to RFdiffusion for binder generation. You can try it out here:
github.com/PapenfussLab/proteindj
#ProteinDJ
#BindCraft
#ProteinDesign
@wehi-research.bsky.social
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Pereda Lab
Centro de Investigación del Cáncer (CSIC-USAL-FICUS)
about 1 month ago
Compartimos la información de los tres eventos que tenemos programados para el viernes 28. Seminario científico del
@ciccancer.bsky.social
(
@usaloficial.bsky.social
-
@csic.es
) de 10-11 horas:
www.cicancer.org/press-room/c...
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Pereda Lab
IBFG
about 1 month ago
External seminar at the IBFG! 📢 Talk by Dr. Héctor García-Seisdedos -
@ibmb-csic.bsky.social
(Barcelona, Spain) 🥼 🔬Topic: Infinite assembly of folded proteins 📍 IBFG Auditorium, Salamanca 🗓️ Nov 28, 2025 – 12:00 PM
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Pablo Alcón
about 1 month ago
"Como pasa con mucho de lo que rodea a la ciencia en España, el nombre no es muy conocido en nuestros lares. La única forma en la que un científico salta al candelero es cuando le dan algún premio, se implica en un escándalo o fallece."
elpais.com/ciencia/2025...
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Antonio García-Bellido y el hilo de Ariadna de la biología
El influyente científico, fallecido el 10 de noviembre a los 89 años, deja una pregunta: cómo las conversaciones entre células controlan el espacio y la forma
https://elpais.com/ciencia/2025-11-19/antonio-garcia-bellido-y-el-hilo-de-ariadna-de-la-biologia.html
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Pereda Lab
Nogales Lab
about 1 month ago
Excited to share our new preprint in collaboration with Ahmet Yildiz's lab. Check out how our team uncovers a novel binding footprint and motor regulation mechanism for MAP9 Congrats to Burak Cetin and
@aryantaheri.bsky.social
www.biorxiv.org/content/10.1...
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Pereda Lab
Instruct-ERIC
about 1 month ago
On
#EuropeAntibioticAwarenessDay
, we highlight the great and impactful work done in structural biology on managing and combatting antibiotic resistance, including work from Markus Weingarth and team at
@utrechtuniversity.bsky.social
through Instruct-ERIC!
instruct-eric.org/scientifichi...
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Instruct-NL Develop Clovibactin: The Potential New Antibiotic with Low Resistance
Instruct-ERIC is a pan-European research infrastructure in structural biology, making high-end technologies and methods available to all European researchers.
https://instruct-eric.org/scientifichighlights/instruct-nl-develop-clovibactin-the-potential-new-antibiotic-with-low-resistance/
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Pereda Lab
José Antonio Manso
about 1 month ago
2/ For full step-by-step instructions, check out our newly published
@cp-starprotocols.bsky.social
article:
star-protocols.cell.com/protocols/4574
Below is a brief overview of the 5 programs included in the suite.👇
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Cell Press: STAR Protocols
STAR Protocols is an open access, peer-reviewed journal from Cell Press. We offer structured, transparent, accessible, and repeatable step-by-step experimental and computational protocols from all are...
https://star-protocols.cell.com/protocols/4574
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Pereda Lab
José Antonio Manso
about 1 month ago
1/ With jamdock-suite, you can automate every major step of virtual screening in a local environment: 🔹 Compound library generation 🔹 Receptor preparation 🔹 Vina docking 🔹 Resuming interrupted runs 🔹 Ranking and analyzing hits 💻 Works on Windows 10/11, Linux, and macOS.
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Pereda Lab
José Antonio Manso
about 1 month ago
🚀 Interested in large-scale virtual screening using molecular docking? Meet jamdock-suite:
github.com/jamanso/jamd...
a free toolkit that automates the entire workflow including compound library generation and docking analysis. 🧵
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Pereda Lab
STAR Protocols
about 1 month ago
Protocol for an automated virtual screening pipeline including library generation and docking evaluation
#protocol
#starprotocols
#cellpress
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Protocol for an automated virtual screening pipeline including library generation and docking evaluation
Here, we present a protocol for an automated virtual screening pipeline. We describe steps for generating compound libraries for computational docking including Food and Drug Administration (FDA)-approved drugs, setting up the receptor and grid box, and docking a library of compounds. We then detail procedures for ranking docking results. This protocol offers scripts for Unix-like systems, lowering the access barrier for researchers interested in structure-based drug disc...
http://dlvr.it/TPHW15
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Pereda Lab
IBFG
about 1 month ago
Thank you so much for the opportunity to attend your talk at the IBFG 🙌. It was truly inspiring! ✨👏
@palconh.bsky.social
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Pereda Lab
Magnetic Resonance News
about 1 month ago
Instruct-ES Workshop, Integrative Structural Biology in the new Instruct-ES Center Madrid – January 29-30, 2026, at the IQF Blas Cabrera (CSIC)
@iqf-csic.bsky.social
@instruct-eric.bsky.social
instruct-eric.es/2025/10/10/2...
#NMRchat
🧲
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Integrative Structural Biology in the new Instruct-ES Center Madrid - January 29-30, 2026 - Instruct ERIC Spain
https://instruct-eric.es/2025/10/10/2026-01-instruct-es-new-centres/
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Pereda Lab
Pablo Alcón
about 1 month ago
Very grateful to the Danish Cancer Society and our MBG colleagues for their support! This grant will enable us to expand our research scope and grow our team.
mbg.au.dk/en/news-and-...
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Knæk Cancer grant to support new research in DNA repair mechanisms
Assistant Professor Pablo Alcón from the Department of Molecular Biology and Genetics has received a three-year Knæk Cancer grant of DKK 3.6 million from the Danish Cancer Society. The project aims to...
https://mbg.au.dk/en/news-and-events/news-item/artikel/knaek-cancer-grant-to-support-new-research-in-dna-repair-mechanisms
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Pereda Lab
IBFG
about 2 months ago
👉 Don’t miss this opportunity to explore how cells detect and repair dangerous DNA lesions through the Fanconi anaemia pathway and what cutting-edge imaging is revealing about the molecular mechanisms that safeguard our genome.
#DNARepair
#Genome
#FanconiAnaemia
#CancerResearch
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Pereda Lab
IBFG
about 2 months ago
Extraordinary Seminar at the IBFG! 📢 Talk by Dr. Pablo Alcón - Aarhus University (Aarhus, Denmark) 🔬Topic: Understanding DNA Repair: Visualizing Tumour Suppressors in Action 🗓 Nov 14, 2025 – 12:00 PM 📍 IBFG Auditorium, Salamanca
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Pereda Lab
Ben Goult
about 2 months ago
🧠 Fully funded 4-year PhD studentship 🧠 Please repost BBSRC NWD project with
@parikki.bsky.social
and
@iamabyron.bsky.social
Come join us to look at how mechanical and oxidative stress signalling pathways converge on the synaptic scaffold protein talin.
www.findaphd.com/phds/project...
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(BBSRC NWD) A novel redox mechanosignalling nexus in the synapse that is misregulated in neurodegeneration at University of Liverpool on FindAPhD.com
PhD Project - (BBSRC NWD) A novel redox mechanosignalling nexus in the synapse that is misregulated in neurodegeneration at University of Liverpool, listed on FindAPhD.com
https://www.findaphd.com/phds/project/bbsrc-nwd-a-novel-redox-mechanosignalling-nexus-in-the-synapse-that-is-misregulated-in-neurodegeneration/?p190348
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Pereda Lab
Monica Balsera
about 2 months ago
Happy to share that our new paper is now available online
@irnasa.bsky.social
@usaloficial.bsky.social
@unizar.es
@uahes.bsky.social
t.co/daOjT5HjC2
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Pereda Lab
MRC Laboratory of Molecular Biology
about 2 months ago
Excellent
#postdoc
opportunity available in
@sjorsscheres.bsky.social
’ group, working on new image processing algorithms for
#cryoEM
structure determination in their
#RELION
open-source software.
www.nature.com/naturecareer...
Apply by 25 NOV
#PostdocJobs
#ScienceJobs
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Pereda Lab
RCSB Protein Data Bank
about 2 months ago
Many thanks to the folks at the San Diego Supercomputer Center for highlighting our project!
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SDSC-housed Protein Data Bank Brings Molecules Up to Size
Molecules — the unseen architects that form everything from the DNA in your cells to the planets in distant galaxies, crafting the very fabric of reality while remaining too small for the human eye to glimpse. But thanks to the Protein Data Bank we can now “see” these hidden wonders.
https://today.ucsd.edu/story/sdsc-housed-protein-data-bank-brings-molecules-up-to-size
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Pereda Lab
Agencia Estatal de Investigación
about 2 months ago
🌟Aprobada la convocatoria de tramitación anticipada de ayudas a “Proyectos de Generación de Conocimiento” 2025 (#PID2025) 💵700 M€ (+25 M€ que 2024) ➡️Solicitudes 20 nov- 16 de dic 2025 📹Webinario: 18 de nov | 10:30 h.
zoom.us/j/99421301250
www.aei.gob.es/convocatoria...
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Pereda Lab
Bijvoet Centre
about 2 months ago
The Dutch Research Council (NWO) announced large investments in 11 (inter)national research infrastructures this week, and we are very happy that includes investments in our electron microscopy and mass spectrometry facilities, through projects EMPower and BioBeyond-NL:
www.nwo.nl/en/news/nati...
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National Roadmap: NWO invests 197 million euro in eleven Large-Scale Research Infrastructures | NWO
Eleven consortia from various scientific disciplines are set to launch projects of great value to science. But also to the economic and social prosperity of the Netherlands. For example, a consortium led by TU Delft will start work on a detailed virtual model of the Dutch energy system. In another project, a consortium of UMC Utrecht is developing an MRI scanner that can scan people in motion.
https://www.nwo.nl/en/news/national-roadmap-nwo-invests-197-million-euro-in-eleven-large-scale-research-infrastructures
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Pereda Lab
Daniel Hurdiss
about 2 months ago
Thrilled, and admittedly relieved, to see this major investment in Dutch
#cryoEM
become reality! 🇳🇱🔬 Honoured to be a co-applicant on this national initiative and very excited for the opportunity to advance our work in cellular structural virology! 🦠
www.uu.nl/en/news/33-m...
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33 million euro investment for national electron microscope facility EMPower
A major new national facility for electron microscopy, called EMPower, has been awarded to a consortium of Dutch universities and medical centers. EMPower aims to pave the way for major discoveries im...
https://www.uu.nl/en/news/33-million-euro-investment-for-national-electron-microscope-facility-empower
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Pereda Lab
RCSB Protein Data Bank
about 2 months ago
AI in Protein Design: Hype vs. Reality Explained by David Baker In this GEN interview, he emphasizes that designing new proteins from scratch is now a reality. Whether AI transforms medicine will require improving our understanding of biology's complexity
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AI in Protein Design: Hype vs. Reality Explained by David Baker
In this GEN interview, Nobel Laureate David Baker, PhD, emphasizes that designing proteins from scratch is reality and unpacks what's needed for AI to transform medicine.
https://www.genengnews.com/topics/artificial-intelligence/ai-in-protein-design-hype-vs-reality-explained-by-david-baker/
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Pereda Lab
Pietro Roversi
4 months ago
Erice Structural Biology Course 2026 (29 May–6 Jun): apply! Train in Cryo-EM, Cryo-ET & ML to study macromolecular assemblies in cells. Hands-on + theory for next-gen structural cell biology. 🔗
erice2026.azuleon.org/application....
#CryoEM
#CryoET
#MachineLearning
#StructuralBiology
#CellBiology
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International School of Crystallography :: APPLICATION
The International School of Crystallography - held in Erice, Italy, since 1974
https://erice2026.azuleon.org/application.php
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Pereda Lab
Max Perutz Labs Vienna
about 2 months ago
📢 Open Call! The Max Perutz Labs invite applications for a Full Professorship in Integrative Structure Biology with a focus on in situ structural biology using cryo-electron tomography (cryo-ET) and related methods. More details ➡️
tinyurl.com/brswbymu
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Pereda Lab
Ben Goult
about 2 months ago
Vinculin is a simple adapter protein right? Wrong! That’s been the prevailing view for the 46 years since it was discovered. Here we provide a new paradigm and show that vinculin is a complex mechanosensor itself, containing 6 binary switch domains.
www.science.org/doi/10.1126/...
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The mechanical response of vinculin
Vinculin buffers force via dynamic domain unfolding/refolding under physiological load and lacks a stable head-tail lock.
https://www.science.org/doi/10.1126/sciadv.ady6949
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Pereda Lab
about 2 months ago
www.science.org/doi/10.1126/...
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Structural dissection of αβ-tubulin heterodimer assembly and disassembly by human tubulin–specific chaperones
Microtubule assembly requires a set of chaperones known as tubulin-binding cofactors (TBCs). We used cryo–electron microscopy to visualize how human TBCD, TBCE, TBCC, and guanosine triphosphatase (GTP...
https://www.science.org/doi/10.1126/science.ady2708
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Pereda Lab
Anton Bushuiev
2 months ago
Very happy
@roman-bushuiev.bsky.social
and I joined the amazing team led by
@hannes-stark.bsky.social
to work on BoltzGen, a generative model for binder design based on Boltz-2. Excited what it will enable!
add a skeleton here at some point
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Pereda Lab
Sjors Scheres
about 2 months ago
We are looking for a computational postdoc to work with us on new optimisation algorithms to make
#RELION
even better. Join our bubbly team at the
@mrclmb.bsky.social
in Cambridge, UK. 🤗 RTs appreciated.
mrc.tal.net/vx/appcentre...
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Quick Check Needed
https://mrc.tal.net/vx/appcentre-ext/brand-3/spa-1/candidate/so/pm/4/pl/1/opp/2737-Postdoctoral-Scientist-Structural-Studies-Dr-Sjors-Scheres-LMB-2737/en-GB
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Mohammed AlQuraishi
about 2 months ago
OpenFold3-preview (OF3p) is out: a sneak peek of our AF3-based structure prediction model. Our aim for OF3 is full AF3-parity for every modality. We now believe we have a clear path towards this goal and are releasing OF3p to enable building in the OF3 ecosystem. More👇
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Ayer se entregaron los Premios Alumni USAL. Muchas felicidades a los galardonados. En particular a Óscar, Sofia, Javier y Alba del
@ciccancer.bsky.social
2 months ago
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Pereda Lab
Ben Goult
2 months ago
*Fully funded 4-year PhD studentship available* This MRC DiMeN DTP funded project will look at the direct interactions between talin and the hypoxic response machinery to define the protective mechanisms at play in cells that protect against oxygen depletion
www.findaphd.com/phds/project...
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MRC DiMeN Doctoral Training Partnership: The intersection of mechanical signalling and the hypoxic response as a targetable signalling nexus in pancreatic cancer at University of Liverpool on FindAPhD...
PhD Project - MRC DiMeN Doctoral Training Partnership: The intersection of mechanical signalling and the hypoxic response as a targetable signalling nexus in pancreatic cancer at University of Liverpo...
https://www.findaphd.com/phds/project/mrc-dimen-doctoral-training-partnership-the-intersection-of-mechanical-signalling-and-the-hypoxic-response-as-a-targetable-signalling-nexus-in-pancreatic-cancer/?p188895
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Pereda Lab
Olga Calvo
2 months ago
www.lagacetadesalamanca.es/salamanca/se...
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El 'secreto' de la elección para acoger una tecnología única en Europa: «Tenía que estar en Salamanca» | La Gaceta de Salamanca
El Instituto de Biología Funcional incorpora un sistema de pinzas ópticas avanzado impulsado por el científico de la Universidad de Berkeley Carlos Bustamante
https://www.lagacetadesalamanca.es/salamanca/secreto-eleccion-acoger-tecnologia-unica-europa-estar-20251022061500-nt.html
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Pereda Lab
Adrian Roitberg
2 months ago
Finally out in print! Long time project with
@olexandr.bsky.social
and the PHENIX group. Refinement of X-ray and CryoEM structures, using Machine Learned Potentials as the back end to help fitting. This fulfills the old dream of doing QM refinement, but very very cheap
www.nature.com/articles/s41...
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AQuaRef: machine learning accelerated quantum refinement of protein structures - Nature Communications
AQuaRef employs machine learning to refine protein structures from cryo-EM and X-ray data in Phenix. It achieves quantum-level precision, improving model geometry and fit to the data while reducing ov...
https://www.nature.com/articles/s41467-025-64313-1
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