Shout out and thanks to everyone who was a part of this; one couldn’t have done it alone. @rgottardo.bsky.social @markrobinsonca.bsky.social @stephaniehicks.bsky.social @lmweber.bsky.social and many more.

@rgottardo.bsky.social @dilibertomd.bsky.social @inserm.fr @hcl-recherche.bsky.social

📄 Study published in @natcomms.nature.com and led by Laurence de Leval, @rgottardo.bsky.social @khomicsko.bsky.social & Elo Madissoon. @unil.bsky.social #chuv @owkin.bsky.social

🧬 New paper out! 🔗 www.nature.com/articles/s41... Frustrated by noisy CITE-seq data? ADTNorm helps normalize it and introduces a staining index to assess antibody quality. Great work by former postdoc Ye Zheng. Supported by @hipcproject.bsky.social #CITEseq #SingleCell #ADTNorm

Big shoutout to our own Jieran Sun onesinglecell.bsky.social for leading this team effort! 🧠📍 Benchmarking clustering in spatial transcriptomics isn’t easy — but here is SACCELERATOR Preprint: www.biorxiv.org/content/10.1... With markrobinsonca.bsky.social, Naveed Ishaque, Ahmed Mahfouz, Brian Long

Are you interested in #Xenium panel comparisons: 5K vs targeted? Want to increase cell-type resolution with Xenium? Read our paper and check out our SPLIT method. www.biorxiv.org/content/10.1... Collaboration with @khomicsko.bsky.social cc: @10xgenomics.bsky.social #SpatialTranscriptomics

🚀 First MOSAIC consortium paper and MOSAIC Window: a rich 60-patient public (multimodal) dataset accessible via EGA. 📄 www.biorxiv.org/content/10.1... #CancerResearch #SpatialTranscriptomics #SingleCell #PrecisionOncology #AI cc: @owkin.bsky.social @10xgenomics.bsky.social

🎉 New paper alert. We benchmarked Visium, GeoMx, and Chromium for FFPE tumor analysis. Thanks @estellayixingdong.bsky.social for pushing this forward, & MOSAIC collaborators! 📄 www.nature.com/articles/s41... #SpatialTranscriptomics #CancerResearch cc: @owkin.bsky.social @10xgenomics.bsky.social

New expanded @hipcproject.bsky.social starter pack: go.bsky.app/AozZWPx

Congratulations @rrmsky.bsky.social !

Our collaborators @rgottardo.bsky.social and Ken Stuart (+ others) describe tagtango, an application to compare #single-cell annotations. #bioinformatics academic.oup.com/bioinformati...

#NIH HIPC consortium starter pack with added members @slimfourati.bsky.social @bjoernpeters.bsky.social @joanndarce.bsky.social @immunespace.bsky.social go.bsky.app/AozZWPx

Precision Dermatology 2.0: #DataScience + #Immunology + #Genomics + #Clinical Science. Interdisciplinary collaboration at its best at the @CHUV. www.chuv.ch/fr/chuv-home... Paper on @naturecomms.bsky.social www.nature.com/articles/s41...

An older article on why I remain cautiously optimistic about generative #AI in #healthcare: www.rts.ch/info/science...

Very cool! One genomic test can diagnose nearly any infection! Comes out of the lab of Charles Chiu @ucsfhealth.bsky.social www.ucsf.edu/news/2024/11...

Thanks #Spotify for letting me know that #Vulfpeck was my #1 artist for 2024. Top 0.05% of listeners worldwide. Almost significant! Of course, not surprised.

By popular demand, I have updated our starter pack in Stats, ML & Omics. Let me know if you'd like to be added. #ML #AI #singlecell #spatial #omics #statistics go.bsky.app/73rcuJn

Great news! Thrilled about this new appointment at EPFL to strengthen collaborations in biomedical data science across CHUV, @unil.bsky.social, and the EPFL. Excited to work closely with EPFL colleagues and students ! #datascience #AI #medicine #biology actu.epfl.ch/news/two-app...

Interesting work from @deep-mind.bsky.social on probabilistic weather forecasting (aka GenCast) www.nature.com/articles/s41... BUT why didn't they cite previous work in this space by Raftery and colleagues: www.science.org/doi/full/10.... journals.ametsoc.org/view/journal... and many other papers!

Here is a starter pack for the #NIH Human #Immunology Project Consortium (@hipcproject.bsky.social). #HIPC members, please reach out if you'd like to be added. go.bsky.app/AozZWPx

Ok, as requested, here’s an updated list with additional people: go.bsky.app/73rcuJn Reach out if you want to be added! #AI #ML #DataScience #Omics #SingleCell #SpatialBiology

@lpachter.bsky.social Interesting! Also, Louvain/Leiden determine the number of clusters automatically (through the resolution), often leading users to assume the default is optimal! However, identifying the correct number of clusters is a complex statistical problem, which shouldn't be ignored.

Thanks @tsanglab.bsky.social for putting this together! #immunology #datascience go.bsky.app/PjH2Fuj

Ok, I’ve added a few more people to the list: go.bsky.app/73rcuJn Please reach out if you want to be added! The more the better. #AI #ML #DataScience #Omics #SingleCell #SpatialBiology

Ok, I tried to create my own list of people working on developing statistical or machine learning models applied to omics data. I am sure I missed a lot of cool people. If you'd like to be added, let me know. #Stats #ML #Omics go.bsky.app/73rcuJn

We’re about to get started!

Jacques Fellay (EPFL) and I (UNIL/CHUV) will be discussing applications of #AI in #Health at 10:30 AM. This is one of the areas where #AI is poised to make the biggest impact in the coming decade. Join us, ask your questions, and be part of the conversation. Don’t miss it—be there or be square! 💡🌍

Thank you for this incredible honor! 🙏 A huge shoutout to the trainees in my lab—this achievement is thanks to you. Excited for what’s ahead from our Biomedical #DataScience Center at UNIL/CHUV 🚀 #Teamwork #Innovation #AI #HighlyCited2024 clarivate.com/highly-cited... @unil.bsky.social

Jacques Fellay (EPFL) and I (UNIL/CHUV) will be discussing applications of #AI in #Health at 10:30 AM. This is one of the areas where #AI is poised to make the biggest impact in the coming decade. Join us, ask your questions, and be part of the conversation. Don’t miss it—be there or be square! 💡🌍

🧭 Faites connaissance avec l’UNIL et ses bachelors! Les Journées Découverte des 4 et 5 décembre sont ouvertes aux personnes intéressées à entreprendre un bachelor à l’UNIL. Infos et inscriptions : wp.unil.ch/decouverte/

🧠Le 23 novembre aura lieu la Journée de l’intelligence artificielle organisée par l’UNIL et l’EPFL. L’occasion de parcourir ses bénéfices et risques dans les sciences biomédicales, glaciologiques et criminelles. À lire dans l'uniscope 👉 go.unil.ch/sMZUc