🚀 𝗡𝗲𝘄 𝗽𝗮𝗽𝗲𝗿 𝗼𝘂𝘁 𝗶𝗻 𝘁𝗵𝗲 𝗘𝘂𝗿𝗼𝗽𝗲𝗮𝗻 𝗝𝗼𝘂𝗿𝗻𝗮𝗹 𝗼𝗳 𝗜𝗺𝗺𝘂𝗻𝗼𝗹𝗼𝗴𝘆! A Spatial Transcriptomics Map of the Human Tonsil Reveals New Dimensions Beyond the Cellular Atlas, offering new insights into immune responses By @pascual-reguant.bsky.social & @helucro.bsky.social (1st author) 📎 www.cnag.eu/news/spatial...

🚀 Join the Bioconductor Hackathon on Spatial Omics & Image-Derived Data in San Servolo, Italy (Venice) from 19–23 April 2026. Developers in this field are invited to participate. 💡 Limited travel support is available for junior developers 📝 Apply by 20 February: forms.gle/Gv8EdpxV7XK7...

Registration now open for CSAMA! 📜 csama2026.bioconductor.eu Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike! 📸 from the traditional mid-week hike during last year’s edition.

We are looking for a Software Developer to work on R/Python interoperability for single-cell and spatial omics methods. 🔗 Apply here: jobs.dkfz.de/en/jobs/1683...

This year's CSAMA Biological Data Science Summer School in Brixen takes place 24-29 May 2026. Topics: single-cell and spatial omics, statistics, multi-omics, ML/AI, all very hands-on using R / Bioconductor! More info: csama2026.bioconductor.eu Registration: 1 Feb 2026! @bioconductor.bsky.social

CSAMA 2026 - Biological Data Science Summer School Bressanone-Brixen, South Tyrol / Italy 24-29 May 2026 csama2026.bioconductor.eu Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.

A little feisty this, dear Spotify, preluded by “Age is just a number. So don’t take this personally”, but on point as always, and point well taken 🙂‍↕️

Many people hours, calls and messages later: OSTA is now “in (pre)print”, though the real thing lives at bioconductor.org/books/OSTA. Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions). It’s been a joy working with you @estellayixingdong.bsky.social!

📣 Calling Bioconductor users and developers! 🧬 ✨ Join our new quarterly online seminar series featuring contributor innovations and discussions on package integration. Enjoy 30 minutes of insights, 15 minutes of guided discussion, and 15 minutes of open Q&A. Share questions live or in chat!

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🚀 Bioconductor 3.22 is released! Thanks to all developers and community members for contributing to the project! 🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...

🧬 EuroBioC2026 is coming to Turku, Finland, from June 3–5, 2026! Expect 3 exciting days with the Bioconductor community, showcasing the latest advances in Bioconductor software and emerging technologies shaping computational biology. 👉 More details soon at eurobioc2026.bioconductor.org

Thank you to all our amazing sponsors, organizers, speakers, and attendees for making #EuroBioC2025 in Barcelona such a success! Read the full recap blog post here👉 blog.bioconductor.org/posts/2025-1... And, see you next year at #EuroBioC2026! 🎉 #Bioconductor #Community #Conference

I'm very excited to share our latest preprint! We introduce structure-based analysis of spatial omics data – an approach that focuses on multi-cellular anatomical structures rather than single cells. We also present sosta to facilitate this type of analysis: bioconductor.org/packages/sos...

It’s happening 🤗 #EuroBioC2025 @bioconductor.bsky.social

🚀 Spatial Transcriptomics (Imaging) + Spatial-centric analyses by @helucro.bsky.social : the way to truly interrogate tissues!!! 📖 Read our pre-print on human tonsil architecture (full of tonsiLove ♥️) here: doi.org/10.1101/2025...

We are excited to share the publication of our paper on exploratory spatial statistics for spatial omics data academic.oup.com/nar/article/...

🌟 One Week Left to Nominate for Bioconductor’s 2025 Advisory Boards! 🌟 Help shape the future of open science and bioinformatics by joining the Community or Technical Advisory Board. 🗓️ Deadline: August 31 📥 Apply or nominate: CAB 👉 forms.gle/8NYxRGhprfuN... TAB 👉 forms.gle/eqef9ThpUypc...

In July we had the 3rd edition of the Ukrainian Biological Data Science Summer School. Now a regular, it has created a sense of community: young people eager to learn new topics, network across the country&world. Seeing how science is a positive&optimistic force. www.huber.embl.de/group/posts/...

⏳ One week left to register! Join us at EuroBioC2025 in Barcelona and the Bioconductor Carpentry Workshops for hands-on learning, community building, and cutting-edge bioinformatics. 🗓️ Registration closes August 28 — don’t miss out! 🔗 eurobioc2025.bioconductor.org #EuroBioC2025 #RStats

🌟 Bioconductor 2025 CAB & TAB nominations are open! Join our advisory boards to support community growth or guide technical strategy. 📅 Apply by Aug 31 CAB: forms.gle/8NYxRGhprfuN... TAB: forms.gle/eqef9ThpUypc... #Bioconductor #RStats

🎨 Calling all Bioconductor package developers! We’re building a Sticker Hexwall for #EuroBioC2025 Submit your package sticker by July 22 to be featured: 🔗 eurobioc2025.bioconductor.org/pages/hexwal... Know a package that’s missing a sticker? Encourage them to join in! #Bioconductor #RStats

Did you know you can infer CNVs using image-based spatial transcriptomics? Check it out in our latest preprint.

📝 New blog post: Bioconductor and ggplot2 4.0.0 - What’s Changing and How to Prepare A major ggplot2 update is coming and may impact Bioconductor packages. What’s changing, how to test, and where to get help 👉 blog.bioconductor.org/posts/2025-0... #Bioconductor #RStats

In Situ Inference of Copy Number Variations in Image-Based Spatial Transcriptomics https://www.biorxiv.org/content/10.1101/2025.07.02.662761v1

Going from methods dev to full on cancer bio has been tough. All the more excited to see this out at last— www.biorxiv.org/content/10.1... @pascual-reguant.bsky.social @brukerspatial.bsky.social @hoheyn.bsky.social

📣 Late-breaking poster call for #EuroBioC2025 is now open! Submit by July 11 to present your work in Barcelona this September. 🔗 forms.gle/ewTGdKzB2xyE... 📅 Notifications by July 15 #Bioconductor #Bioinformatics

📝 New Bioconductor Blog Post! We’ve just launched the first in a new series by Vince Carey, founding contributor to Bioconductor and core developer, exploring the evolving complexity and value of the Bioconductor ecosystem. Check it out 👉 blog.bioconductor.org/posts/2025-0... #Bioconductor #RStats

EuroBioC goes south! The most south since… ever? Come join us in Barcelona 🇪🇸 for great science, community, and scholarly chats by the sea 🌊

⏳ Time’s running out! Submit your abstract for #EuroBioC2025 by 24 April. Join us this Sept in Barcelona to share your research, meet the #Bioconductor community & explore all things #Bioinformatics + #RStats. 👉 eurobioc2025.bioconductor.org/pages/submis...

Bioconductor 3.21 released with 72 new software packages, for a total of 2341 software packages, 432 experiment data packages, 928 annotation packages, 30 workflows and 5 books bioconductor.org/news/bioc_3_... 🧬🖥️🧪 #Rstats

Eleven (!) quick tips for writing a Bioconductor package from @csoneson.bsky.social et al. from @fmiscience.bsky.social journals.plos.org/ploscompbiol...

📣 EuroBioC2025: Abstract Submissions Open! Join us in Barcelona, Spain 🇪🇸, Sep 17-19, 2025, for the European Bioconductor Conference! Submit your abstract for a short talk, workshop, or poster by Apr 24. ➡️ Submit https://buff.ly/3EN9w6P #EuroBioC2025 #Bioinformatics #RStats #DataScience

🎨 EuroBioC2025 Sticker Contest! Unleash your creativity for the European Bioconductor Conference in Barcelona! The winning sticker will be featured on our website and handed out at the event. 🗓 Deadline: Mar 10, 2025 🏆 Prize: Free reg to EuroBioC2025 for winning design! Abstract call coming soon!

Do you want to learn more about the statistical analysis of proteomics, metabolomics, single-cell and spatial transcriptomics? Do you want to up your game with R and Bioconductor? All of this while enjoying summer in the beautiful Italian Alps? Join us for the 21st edition of CSAMA July 6-11!

@helucro.bsky.social @estellayixingdong.bsky.social @kevinyamauchi.bsky.social @arturmansl.bsky.social Dario Righelli, Louise Deconick, Vincent Carey Should you use R (Bioconductor) or Python (scverse) for spatial omics? Ideally, you won’t have to choose one. We are working toward making...

Recently, we held the first #scverse SpatialData 3-day hackathon in Basel (Switzerland), where we brought together 20 developers from the Python, R, and web communities to work on interoperability, performance, and ergonomics for spatial omics data. Here is what we worked on!

It’s been a real fun (& productive) event, as well as a great demo of how R/Bioc and Python/scverse communities can come together to pursuit mutually beneficial (vs. redundant/diverging) efforts. — Thanks @scverse.bsky.social & all of the SpatialData team for having us!

As Saint Nicholas is coming to a close, these were my fav (non-science) 📖s of '24: 💻 Living Computers, A Brazma — from snowflakes to Asimov & GEB to ML... A rare read by a rare (& lovely) mind. ☁️ The Discovery of Heaven, H Mulisch — a tome so great, I read it the 2nd time & am still sad it ended.

Interested in spatial statistics for spatial omics data? Check out our new resource: pasta. We show how different technologies lead to different data modalities give and overview of point-pattern and lattice-based spatial analysis. Feedback welcome! arxiv.org/abs/2412.01561

A little piece that's been in the works with former MSc, now PhD student, Jiayi Wang & @markrobinsonca.bsky.social in the multi-sample/-condition/-subpopulation theme: ...

My brother wrote a thesis summary in Greek, and that’s gotta be the singular best thing I’ve seen. So aesthetic… Although I can’t say that I understand the math.

Great read!! Can recommend -- "Academics have their own mythology. We view ourselves as fiercely independent, objective truth-seekers. Our research is curiosity-driven & its impact is measured through the respect of our esteemed peers. We combine this with the education of the next generation, ...

So I just discovered that one can `setMethod`s on multiple S4 signatures with a `for`-loop 🤯 and go from many to ~5 lines 🤩 So now you know. #rstats

European Bioconductor Conference (EuroBioC2025): 17-19 September 2025 in Barcelona! eurobioc2025.bioconductor.org