Brian DePasquale
@briandepasquale.bsky.social
š¤ 1617
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science.
https://briandepasquale.github.io
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Brian DePasquale
Kevin J Miller
2 days ago
Computational models are a key part of science but discovering new ones is hard! DataDIVER discovers concise models from data, which surface new mechanistic ideas and clear predictions for future experiments From Google Deepmind Neuroscience Lab + collaborators
www.biorxiv.org/content/10.6...
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Brian DePasquale
2 days ago
FY27 Focused Research Programs Spotlight: "AI for Characterizing and Designing Biomolecular Interactions" Learn more about this FRP:
spr.ly/63323B8Y3sz
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šØNew PreprintšØ from amazing PhD student
@ryguy.io
! We augmented the classic DDM to account for state-dependent changes in decision strategy and found a clear improvement. Applied to a novel 24 hour dataset we found support for circadian influence on decisions and more! Check out thread and paper!
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6 days ago
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Jennifer Ouellette
26 days ago
National Academy of Sciences experts denounce Trumpās NSF board purge
www.scientificamerican.com/article/nati...
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National Academy of Sciences experts denounce Trumpās NSF board purge
In an open letter, thousands of researchers criticized the White Houseās firing of the research agencyās board as āan alarming attackā on U.S. science
https://www.scientificamerican.com/article/national-academy-of-sciences-experts-denounce-trumps-nsf-board-purge/
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Brian DePasquale
Friedemann Zenke
about 1 month ago
1/7 New paper accepted as ICML spotlight
arxiv.org/abs/2605.03517
! We unify self-supervised learning (SSL) algorithms (e.g., contrastive, VICReg, stopgrad) via latent distribution matching (LDM), which matches an induced latent distribution to an explicit latent model.
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Datta Lab
about 1 month ago
Excited to see our paper describing a stereotyped receptor map for smell (led by
@davidhbrann.bsky.social
) out in the world! See below for short thread with open access link to paper
www.nytimes.com/2026/04/29/s...
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Scientists Unveil āLong Lostā Map for Smell
https://www.nytimes.com/2026/04/29/science/nose-brain-smell-olfaction.html
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Aadi Prasad
about 1 month ago
maybe besides the point but didnt Lebos et al show that good models can recover interpretable models of orbital mechanics like 5 years ago?
arxiv.org/abs/2202.02306
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Rediscovering orbital mechanics with machine learning
We present an approach for using machine learning to automatically discover the governing equations and hidden properties of real physical systems from observations. We train a "graph neural network" ...
https://arxiv.org/abs/2202.02306
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Jacob Aron
about 1 month ago
Scrap all of this wasted time and effort and just award grants randomly. The article briefly suggests and dismisses this but I think it would solve a lot of problems with science funding. If you're overwhelmed with good submissions, you're already choosing randomly and just not admitting it.
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Film you've watched more than six times with a gif. Hard mode: no Star Trek, Star Wars, LOTR, DC, Marvel, Disney, Pixar, Spielberg, Cameron, Wachowskis, or Ghibli:
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about 1 month ago
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Brian DePasquale
Mary Kenney
about 2 months ago
One of the hardest + most important things to learn as a creative. Stop waiting to make your āopusā ā keep going, get better
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Mohammed AlQuraishi
3 months ago
New OpenFold3 preview out! (OF3p2) It closes the gap to AlphaFold3 for most modalities. Most critically, we're releasing everything, including training sets & configs, making OF3p2 the only current AF3-based model that is functionally trainable & reproducible from scratchš§µ1/9
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Carl T. Bergstrom
about 2 months ago
Johnny Knoxville says Ed Witten should be more careful when talking about physics.
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Jeremiah Cohen
about 2 months ago
Delighted to share our discoveries about one of the brain's neurotransmitter systems:
www.biorxiv.org/content/10.6...
Together with colleagues at the
@alleninstitute.org
, we have learned a lot about a tiny cluster of neurons in the brainstem locus coeruleus (LC) that releases norepinephrine (NE). 1
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https://www.biorxiv.org/content/10.64898/2026.04.10.717727v1
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Ronen Tamari
about 2 months ago
Interesting piece claiming that the asymmetry between writing acceleration and review acceleration is breaking science. Essentially Brandoliniās law (The amount of energy needed to refuteĀ bsĀ is anĀ order of magnitudeĀ bigger than that needed to produce it) applied to science publishing >
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Publish and Perish: How AI-Accelerated Writing Without Proportional Verification Investment Degrades Scientific Knowledge
Artificial intelligence tools are accelerating manuscript production far faster than peer review capacity can expand. Applying the theory of constraints from manufacturing science, we formalize this a...
http://arxiv.org/abs/2604.05714
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Mina Kimes
about 2 months ago
I can't stop laughing at this post. It's perfect.
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Fix for next 11th hour grant push ā Dr Robby tells me to Dr the f**k up š„
about 2 months ago
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Brian DePasquale
Erin Rich
2 months ago
Wow!
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Dan Goodman
2 months ago
This is satisfyingly niche. Shots fired by the chemical reaction networks community.
arxiv.org/abs/2603.12060
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Chemical Reaction Networks Learn Better than Spiking Neural Networks
We mathematically prove that chemical reaction networks without hidden layers can solve tasks for which spiking neural networks require hidden layers. Our proof uses the deterministic mass-action kine...
https://arxiv.org/abs/2603.12060
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Sam Gershman
2 months ago
Among the frustrating aspects of the funding situation in the U.S. is that the strategic response is to apply for more grants, with the result that the equilibrium success rate is pushed lower (up to a point). Scientists get less while spending more time writing grants rather than doing science.
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Ashley Juavinett, PhD
2 months ago
The question of if and how we should be integrating AI into programming and neuroscience education is an ever-present one in my mind. Here are my current set of thoughts, driven by an undercurrent of *you need to talk with students about it* regardless of how you personally use AI, or not.
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elia ayoub
2 months ago
The difference between these two is racism
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gavin jones
3 months ago
āIn our culture, preferring an algorithm to a trainee feels like a betrayal of the academic mission.ā Thatās because it is.
www.science.org/content/arti...
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Why I may āhireā AI instead of a graduate student
āIt can competently perform a lot of the work I need immediately,ā this professor writes
https://www.science.org/content/article/why-i-may-hire-ai-instead-graduate-student
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Brian DePasquale
Research Corporation for Science Advancement
3 months ago
The 2nd meeting of
#Scialog
: Neurobiology and Changing Ecosystems has begun in Tucson! Special welcome to all our new Fellows. Cosponsored with
@allenphilanthro.bsky.social
, the Frederick Gardner Cottrell Foundation, and
@kavlifoundation.org
.
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Benjamin Cowley
3 months ago
DNN models of the brain are getting bigger. Are we replacing one complicated system in vivo with another in silico? In new work, we seek the *smallest* DNN models of visual cortex, balancing prediction with parsimony. It turns out these compact models are surprisingly small!
rdcu.be/e5H8G
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Compact deep neural network models of the visual cortex
Nature - Parsimonious deep neural network models can be used for prediction of visual neuron responses.
https://rdcu.be/e5H8G
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Joshua Weitz
3 months ago
The data is in: the NIH goalposts have shifted. What were once almost certain fundable scores have become coin flips and what used to be likely grants have become aspirational, leading to fewer awards. Another manifestation of how HHS policies have led to fewer awards and less science.
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Science Magazine
3 months ago
Many of the scientists Jeffrey Epstein courted were already well-established and well-funded. So why didnāt they all just say no? Science talked with three who did just that. Hereās how Epstein approached them, and why they refused to have anything to do with him. ā¬ļø
https://scim.ag/40qbXnv
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Meet three scientists who said no to Epstein
The warning signs included a web search, a motherās doubts, and inklings of a āsexist attitudeā
https://scim.ag/40qbXnv
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Brian DePasquale
Kyle Cranmer
3 months ago
Knuth on Claude code!
www-cs-faculty.stanford.edu/~knuth/paper...
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Truly honored to be recognized by the Sloan Foundation. Major thanks to my research collaborators, students, and my many amazing mentors over the years
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4 months ago
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Stephan Saalfeld
4 months ago
This is work that we presented at last year's
#Cosyne
workshop on
#GNN
s
sites.google.com/bu.edu/gnnwo...
. Better late than never. You can reproduce everything with the associated notebooks. I think it's a good start to learn how to use GNNs to infer something about NNs.
arxiv.org/abs/2602.13325
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Graph neural networks uncover structure and functions underlying the activity of simulated neural assemblies
Graph neural networks trained to predict observable dynamics can be used to decompose the temporal activity of complex heterogeneous systems into simple, interpretable representations. Here we apply t...
https://arxiv.org/abs/2602.13325
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Nanthia Suthana
4 months ago
The biggest problem holding neuroscience back right now isnāt data or tools, thanks in large part to the BRAIN Initiative. Itās fragmentation across species. I wrote this to hopefully spark discussion around an issue that can only be solved as a communityš
www.thetransmitter.org/animal-model...
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Neuroscience has a species problem
If neuroscience is serious about building general principles of brain function, cross-species dialogue must become a core organizing principle.
https://www.thetransmitter.org/animal-models/neuroscience-has-a-species-problem/
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Brian DePasquale
Atika Syeda
4 months ago
Excited to share āOrofacial behaviors, not eye movements, govern neural activity in mouse visual cortexā
www.biorxiv.org/content/10.6...
Summary below...
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Maria Geffen
4 months ago
A special year for the Cajal Course in Computational Neuroscience: the BRAIN Prize winners Haim Sompolinsky and Larry Abbott will join us as keynote speakers. And we will bring you the same great roster of instructors as every year. Applications are now open!
cajal-training.org/on-site/comp...
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The Brain Prize Course - Computational and Theoretical Neuroscience - CAJAL
[ā¦]
https://cajal-training.org/on-site/computational-neuroscience-2026/
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Brian DePasquale
Akela Cooper
4 months ago
Reupping this cause itās evergreen and I feel better knowing someone out there called him out like this
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Brian DePasquale
Gatsby Computational Neuroscience Unit
5 months ago
š¢ Applications open on 19 Jan for the 7-week
#Mathematics
#SummerSchool
in London. You will develop the maths skills and intuition necessary to enter the
#TheoreticalNeuroscience
/
#MachineLearning
field. Find out more & register for the information webinar š
www.ucl.ac.uk/life-science...
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Brian DePasquale
Ann Kennedy
5 months ago
The best cooking threads start with purchase of a refractometer
www.reddit.com/r/Cooking/co...
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New work from
@mikeeconomo.bsky.social
lab showing flexible engagement of motor cortex during dynamic motor control!
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5 months ago
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Tudor Dragoi
5 months ago
Very excited to share a new preprint - my first paper in the
@mikeeconomo.bsky.social
labāÆwhere weāÆasked when and why the motor cortex is recruited for movement control:š§ šhttps://www.biorxiv.org/content/10.64898/2026.01.13.699314v1
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Dynamic engagement of the motor cortex in controlling movement
Neural circuits do not contribute equally or continuously to behavior. In mice, the motor cortex can be essential or dispensable for movement in different contexts, but how it is dynamically recruited...
https://www.biorxiv.org/content/10.64898/2026.01.13.699314v1
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Brian DePasquale
Mark Pullinger
6 months ago
Puccini and Toscanini had a stormy friendship. One Christmas, Puccini sent Toscanini a panettone, forgetting they had fallen out. Remembering later, he sent a telegram āPANETTONE SENT BY MISTAKE. PUCCINIā. He received a telegram back āPANETTONE EATEN BY MISTAKE. TOSCANINIā! š
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Brian DePasquale
Itai Yanai
6 months ago
Doing a PhD is - at heart - one long discussion with your mentor. The discussion changes over time - with unexpected turns and ups & downs - but through it all is a pair of people discussing a topic endlessly to make sense of it. PhD students: choose someone you like to talk to!
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derek guy
6 months ago
thinking of the introverted woman who said she's never felt FOMO. she's only felt ROMO (Relief Of Missing Out)
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Dan Goodman
6 months ago
Great read. Too many people assume that the role of theory papers in neuro is to "explain neural data". I'm not even sure we can explain anything yet. Data is more like a muse for theory.
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Noah Bressman, PhD
7 months ago
The Batman Effect, just published in NATURE: When an experimenter dressed as Batman boarded a train, passengers were significantly more likely to offer their seats to another āpregnantā experimenter than if Batman wasnāt present (67.21% vs. 37.66%)
#SciComm
1/2
www.nature.com/articles/s44...
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Unexpected events and prosocial behavior: the Batman effect - npj Mental Health Research
npj Mental Health Research - Unexpected events and prosocial behavior: the Batman effect
https://www.nature.com/articles/s44184-025-00171-5
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š NEW PREPRINT FROM THE LAB ā¼ļø We introduce a new ML model, LoRAX, for predicting olfactory responses from chemical features, a tricky problem that benefits from progress in ML for biochem. We combine LoRA fine-tuning with protein and chemical foundation models,
www.biorxiv.org/content/10.1...
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Low rank adaptation of chemical foundation models generate effective odorant representations
Featurizing odorants to enable robust prediction of their properties is difficult due to the complex activation patterns that odorants evoke in the olfactory system. Structurally similar odorants can ...
https://www.biorxiv.org/content/10.1101/2025.11.04.686628v2
7 months ago
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Brian DePasquale
Sam Rodriques
7 months ago
Today, we're announcing Kosmos, our newest AI Scientist, available today. Kosmos makes fully autonomous scientific discoveries at scale by analyzing datasets and literature, and is the most powerful agent for science so far. Beta users estimate that Kosmos does 6 months of work in a single day.
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Kenneth Harris
7 months ago
1. New preprint resolving a conundrum in systems neuroscience with an AI scientist, and humans Reilly Tilbury, Dabin Kwon,
@haydari.bsky.social
,
@jacobmratliff.bsky.social
,
@bio-emergent.bsky.social
,
@carandinilab.net
,
@kevinjmiller.bsky.social
,
@neurokim.bsky.social
www.biorxiv.org/content/10.1...
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Characterizing neuronal population geometry with AI equation discovery
The visual cortex contains millions of neurons, whose combined activity forms a population code representing visual stimuli. There is, however, a discrepancy between our understanding of this code at ...
https://www.biorxiv.org/content/10.1101/2025.11.12.688086v1
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First published paper from the depaqlab, led by the supernatural
@ryguy.io
! Glad to add a new software resource to the neuro community for fitting SSMs, including hierarchical models and switching GLMs, and many others! If you love Julia and SSMs, this is for you!
add a skeleton here at some point
7 months ago
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Brian DePasquale
Oded Rechavi
7 months ago
āThe bad review will come from your list of suggested reviewersā
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Brian DePasquale
Eugene Vinitsky š
8 months ago
What if we did a single run and declared victory
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Brian DePasquale
C. Robert Cargill
8 months ago
Ouch. This one cuts to the bone.
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