Brian DePasquale
@briandepasquale.bsky.social
📤 1606
📥 427
📝 53
science.
https://briandepasquale.github.io
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Brian DePasquale
Carl T. Bergstrom
3 days ago
Johnny Knoxville says Ed Witten should be more careful when talking about physics.
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Jeremiah Cohen
5 days ago
Delighted to share our discoveries about one of the brain's neurotransmitter systems:
www.biorxiv.org/content/10.6...
Together with colleagues at the
@alleninstitute.org
, we have learned a lot about a tiny cluster of neurons in the brainstem locus coeruleus (LC) that releases norepinephrine (NE). 1
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https://www.biorxiv.org/content/10.64898/2026.04.10.717727v1
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Ronen Tamari
6 days ago
Interesting piece claiming that the asymmetry between writing acceleration and review acceleration is breaking science. Essentially Brandolini’s law (The amount of energy needed to refute bs is an order of magnitude bigger than that needed to produce it) applied to science publishing >
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Publish and Perish: How AI-Accelerated Writing Without Proportional Verification Investment Degrades Scientific Knowledge
Artificial intelligence tools are accelerating manuscript production far faster than peer review capacity can expand. Applying the theory of constraints from manufacturing science, we formalize this a...
http://arxiv.org/abs/2604.05714
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Mina Kimes
8 days ago
I can't stop laughing at this post. It's perfect.
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Fix for next 11th hour grant push — Dr Robby tells me to Dr the f**k up 🔥
8 days ago
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Erin Rich
16 days ago
Wow!
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Dan Goodman
17 days ago
This is satisfyingly niche. Shots fired by the chemical reaction networks community.
arxiv.org/abs/2603.12060
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Chemical Reaction Networks Learn Better than Spiking Neural Networks
We mathematically prove that chemical reaction networks without hidden layers can solve tasks for which spiking neural networks require hidden layers. Our proof uses the deterministic mass-action kine...
https://arxiv.org/abs/2603.12060
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Sam Gershman
18 days ago
Among the frustrating aspects of the funding situation in the U.S. is that the strategic response is to apply for more grants, with the result that the equilibrium success rate is pushed lower (up to a point). Scientists get less while spending more time writing grants rather than doing science.
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Ashley Juavinett, PhD
19 days ago
The question of if and how we should be integrating AI into programming and neuroscience education is an ever-present one in my mind. Here are my current set of thoughts, driven by an undercurrent of *you need to talk with students about it* regardless of how you personally use AI, or not.
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elia ayoub
21 days ago
The difference between these two is racism
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gavin jones
about 1 month ago
“In our culture, preferring an algorithm to a trainee feels like a betrayal of the academic mission.” That’s because it is.
www.science.org/content/arti...
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Why I may ‘hire’ AI instead of a graduate student
“It can competently perform a lot of the work I need immediately,” this professor writes
https://www.science.org/content/article/why-i-may-hire-ai-instead-graduate-student
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Research Corporation for Science Advancement
about 1 month ago
The 2nd meeting of
#Scialog
: Neurobiology and Changing Ecosystems has begun in Tucson! Special welcome to all our new Fellows. Cosponsored with
@allenphilanthro.bsky.social
, the Frederick Gardner Cottrell Foundation, and
@kavlifoundation.org
.
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Benjamin Cowley
about 2 months ago
DNN models of the brain are getting bigger. Are we replacing one complicated system in vivo with another in silico? In new work, we seek the *smallest* DNN models of visual cortex, balancing prediction with parsimony. It turns out these compact models are surprisingly small!
rdcu.be/e5H8G
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Compact deep neural network models of the visual cortex
Nature - Parsimonious deep neural network models can be used for prediction of visual neuron responses.
https://rdcu.be/e5H8G
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Joshua Weitz
about 1 month ago
The data is in: the NIH goalposts have shifted. What were once almost certain fundable scores have become coin flips and what used to be likely grants have become aspirational, leading to fewer awards. Another manifestation of how HHS policies have led to fewer awards and less science.
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Science Magazine
about 2 months ago
Many of the scientists Jeffrey Epstein courted were already well-established and well-funded. So why didn’t they all just say no? Science talked with three who did just that. Here’s how Epstein approached them, and why they refused to have anything to do with him. ⬇️
https://scim.ag/40qbXnv
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Meet three scientists who said no to Epstein
The warning signs included a web search, a mother’s doubts, and inklings of a “sexist attitude”
https://scim.ag/40qbXnv
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Kyle Cranmer
about 2 months ago
Knuth on Claude code!
www-cs-faculty.stanford.edu/~knuth/paper...
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Truly honored to be recognized by the Sloan Foundation. Major thanks to my research collaborators, students, and my many amazing mentors over the years
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about 2 months ago
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Stephan Saalfeld
about 2 months ago
This is work that we presented at last year's
#Cosyne
workshop on
#GNN
s
sites.google.com/bu.edu/gnnwo...
. Better late than never. You can reproduce everything with the associated notebooks. I think it's a good start to learn how to use GNNs to infer something about NNs.
arxiv.org/abs/2602.13325
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Graph neural networks uncover structure and functions underlying the activity of simulated neural assemblies
Graph neural networks trained to predict observable dynamics can be used to decompose the temporal activity of complex heterogeneous systems into simple, interpretable representations. Here we apply t...
https://arxiv.org/abs/2602.13325
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Nanthia Suthana
2 months ago
The biggest problem holding neuroscience back right now isn’t data or tools, thanks in large part to the BRAIN Initiative. It’s fragmentation across species. I wrote this to hopefully spark discussion around an issue that can only be solved as a community👇
www.thetransmitter.org/animal-model...
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Neuroscience has a species problem
If neuroscience is serious about building general principles of brain function, cross-species dialogue must become a core organizing principle.
https://www.thetransmitter.org/animal-models/neuroscience-has-a-species-problem/
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Atika Syeda
2 months ago
Excited to share “Orofacial behaviors, not eye movements, govern neural activity in mouse visual cortex”
www.biorxiv.org/content/10.6...
Summary below...
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Maria Geffen
3 months ago
A special year for the Cajal Course in Computational Neuroscience: the BRAIN Prize winners Haim Sompolinsky and Larry Abbott will join us as keynote speakers. And we will bring you the same great roster of instructors as every year. Applications are now open!
cajal-training.org/on-site/comp...
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The Brain Prize Course - Computational and Theoretical Neuroscience - CAJAL
[…]
https://cajal-training.org/on-site/computational-neuroscience-2026/
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Akela Cooper
3 months ago
Reupping this cause it’s evergreen and I feel better knowing someone out there called him out like this
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Gatsby Computational Neuroscience Unit
3 months ago
📢 Applications open on 19 Jan for the 7-week
#Mathematics
#SummerSchool
in London. You will develop the maths skills and intuition necessary to enter the
#TheoreticalNeuroscience
/
#MachineLearning
field. Find out more & register for the information webinar 👉
www.ucl.ac.uk/life-science...
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Ann Kennedy
3 months ago
The best cooking threads start with purchase of a refractometer
www.reddit.com/r/Cooking/co...
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New work from
@mikeeconomo.bsky.social
lab showing flexible engagement of motor cortex during dynamic motor control!
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3 months ago
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Tudor Dragoi
3 months ago
Very excited to share a new preprint - my first paper in the
@mikeeconomo.bsky.social
lab where we asked when and why the motor cortex is recruited for movement control:🧠👇https://www.biorxiv.org/content/10.64898/2026.01.13.699314v1
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Dynamic engagement of the motor cortex in controlling movement
Neural circuits do not contribute equally or continuously to behavior. In mice, the motor cortex can be essential or dispensable for movement in different contexts, but how it is dynamically recruited...
https://www.biorxiv.org/content/10.64898/2026.01.13.699314v1
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Mark Pullinger
4 months ago
Puccini and Toscanini had a stormy friendship. One Christmas, Puccini sent Toscanini a panettone, forgetting they had fallen out. Remembering later, he sent a telegram “PANETTONE SENT BY MISTAKE. PUCCINI”. He received a telegram back “PANETTONE EATEN BY MISTAKE. TOSCANINI”! 😂
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Itai Yanai
4 months ago
Doing a PhD is - at heart - one long discussion with your mentor. The discussion changes over time - with unexpected turns and ups & downs - but through it all is a pair of people discussing a topic endlessly to make sense of it. PhD students: choose someone you like to talk to!
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derek guy
4 months ago
thinking of the introverted woman who said she's never felt FOMO. she's only felt ROMO (Relief Of Missing Out)
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Dan Goodman
5 months ago
Great read. Too many people assume that the role of theory papers in neuro is to "explain neural data". I'm not even sure we can explain anything yet. Data is more like a muse for theory.
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Noah Bressman, PhD
5 months ago
The Batman Effect, just published in NATURE: When an experimenter dressed as Batman boarded a train, passengers were significantly more likely to offer their seats to another “pregnant” experimenter than if Batman wasn’t present (67.21% vs. 37.66%)
#SciComm
1/2
www.nature.com/articles/s44...
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Unexpected events and prosocial behavior: the Batman effect - npj Mental Health Research
npj Mental Health Research - Unexpected events and prosocial behavior: the Batman effect
https://www.nature.com/articles/s44184-025-00171-5
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🔔 NEW PREPRINT FROM THE LAB ‼️ We introduce a new ML model, LoRAX, for predicting olfactory responses from chemical features, a tricky problem that benefits from progress in ML for biochem. We combine LoRA fine-tuning with protein and chemical foundation models,
www.biorxiv.org/content/10.1...
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Low rank adaptation of chemical foundation models generate effective odorant representations
Featurizing odorants to enable robust prediction of their properties is difficult due to the complex activation patterns that odorants evoke in the olfactory system. Structurally similar odorants can ...
https://www.biorxiv.org/content/10.1101/2025.11.04.686628v2
5 months ago
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Sam Rodriques
5 months ago
Today, we're announcing Kosmos, our newest AI Scientist, available today. Kosmos makes fully autonomous scientific discoveries at scale by analyzing datasets and literature, and is the most powerful agent for science so far. Beta users estimate that Kosmos does 6 months of work in a single day.
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Kenneth Harris
5 months ago
1. New preprint resolving a conundrum in systems neuroscience with an AI scientist, and humans Reilly Tilbury, Dabin Kwon,
@haydari.bsky.social
,
@jacobmratliff.bsky.social
,
@bio-emergent.bsky.social
,
@carandinilab.net
,
@kevinjmiller.bsky.social
,
@neurokim.bsky.social
www.biorxiv.org/content/10.1...
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Characterizing neuronal population geometry with AI equation discovery
The visual cortex contains millions of neurons, whose combined activity forms a population code representing visual stimuli. There is, however, a discrepancy between our understanding of this code at ...
https://www.biorxiv.org/content/10.1101/2025.11.12.688086v1
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First published paper from the depaqlab, led by the supernatural
@ryguy.io
! Glad to add a new software resource to the neuro community for fitting SSMs, including hierarchical models and switching GLMs, and many others! If you love Julia and SSMs, this is for you!
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5 months ago
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Brian DePasquale
Oded Rechavi
6 months ago
“The bad review will come from your list of suggested reviewers”
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Eugene Vinitsky 🍒
6 months ago
What if we did a single run and declared victory
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C. Robert Cargill
6 months ago
Ouch. This one cuts to the bone.
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Richard Sever
6 months ago
Chemists call for ban on generative AI for chemical structures: "serious errors could damag[e] the next generation of scientists" As ever, the problem seems to be not AI but lazy application of it and lack of checks. Whether _that_ problem is solvable...
www.chemistryworld.com/news/the-che...
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The chemistry community should ban drawing chemical structures with generative AI, chemists warn
AIs like Microsoft's Copilot, Google's Gemini and OpenAI's ChatGPT still make serious errors rendering structural formulae
https://www.chemistryworld.com/news/the-chemistry-community-should-ban-drawing-chemical-structures-with-generative-ai-chemists-warn/4022242.article
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Mike Fainzilber
6 months ago
www.science.org/content/arti...
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Perfume scientists tweak cells into having ‘sense of smell’
A study could transform the lab study of olfaction—and may challenge a Nobel-winning hypothesis
https://www.science.org/content/article/perfume-scientists-tweak-cells-having-sense-smell
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samuel mehr
6 months ago
"the quickest way to get a collaborator to return edits on your manuscript is to write down their affiliation wrong" (ancient academic proverb)
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Ahmed El Hady
7 months ago
Can one bring together Reinforcement learning and Drift Diffusion models to understand collective foraging ? Congrads to Jonathan Marienhagen , Lisa Blum Moyse and Dominik Deffner on this new study. Very happy that I was part of this collaboration. Preprint here:
osf.io/preprints/ps...
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Brian DePasquale
New papers in Network Science
8 months ago
PLOS Comput. Biol.: Stochastic activity in low-rank recurrent neural networks
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1013371
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Dan Levenstein
8 months ago
“NeuroAI should not remain limited to learning statistical relationships, but should also help in building mechanistic and causal models of neural activity. These models will incorporate biological properties of neural circuits, including cellular characteristics and network properties.” 💯💯💯
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Meg Younger
9 months ago
New preprint from
@darbly.bsky.social
@briandepasquale.bsky.social
and my labs! If you love (or hate) mosquitoes, have a look:
doi.org/10.1101/2025...
We used TEM to describe the circuitry used for CO2 detection by mosquitoes. As usual with mosquitoes, nothing is as expected! 🌬️🦟
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Recurrent connectivity supports carbon dioxide sensitivity in Aedes aegypti mosquitoes
The mosquito Aedes aegypti′s human host-seeking behavior depends on the integration of multiple sensory cues. One of these cues, carbon dioxide (CO2), gates odorant and heat pathways and activates hos...
https://doi.org/10.1101/2025.07.29.667487
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John Tuthill
10 months ago
Congrats to the 2025 cohort of McKnight Scholars!
www.mcknight.org/news-ideas/2...
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Lucia Prieto Godino
10 months ago
How do brain circuits evolve? We started looking for some answers by using synapse-resolution cross-species comparative connectomics on an entire olfactory circuit 👇
bit.ly/44aVm9E
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PLOS Biology
10 months ago
Can
#AI
become a true scientist?
@ninamiolane.bsky.social
explores how new technologies are reshaping scientific discovery, and why human expertise remains essential as we enter a new era of research powered by intelligent algorithms. 🧪
plos.io/4kZi0aB
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The fifth era of science: Artificial scientific intelligence
Can AI become a true scientist? This Perspective explores how new technologies are reshaping scientific discovery, and why human expertise remains essential as we enter a new era of research powered b...
https://plos.io/4kZi0aB
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Tired of your boring old DDM? Check out recent work by grad student
@ryguy.io
that introduces a *state-dependent* DDM using an underlying HMM. We find mice change their speed-accuracy strategy from trial to trial! Code provided! (in Julia of course!)
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10 months ago
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