Avi Flamholz
@flamholz.bsky.social
📤 247
📥 212
📝 61
NYC; Lab of Environmental Microbiology
@rockefelleruniv.bsky.social
reposted by
Avi Flamholz
Tristan Caro
3 days ago
The vast majority of permafrost exists in the subsurface. What happens when this deep, ancient permafrost thaws? How fast does it take microbial communities to "wake up"? This project now published in JGR, with
@isotopes.bsky.social
,
@kopflab.bsky.social
, et al., aims to address that question!
loading . . .
Microbial Resuscitation and Growth Rates in Deep Permafrost: Lipid Stable Isotope Probing Results From the Permafrost Research Tunnel in Fox, Alaska
Microbial growth is extremely slow within the first 30 days of thaw. Temperature may drive which taxa are active, but not growth rates Subsurface microbes preferentially produce glycolipids over ...
https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2025JG008759
0
14
6
Congrats to Jan, Sean and the whole Brady lab crew.
add a skeleton here at some point
14 days ago
0
1
0
reposted by
Avi Flamholz
The Rockefeller University
21 days ago
Applications are now open for September 2026 enrollment in The David Rockefeller Graduate Program in Bioscience. Join a vibrant community of scientists pushing the boundaries of discovery. Learn more here:
https://www.rockefeller.edu/education-and-training/graduate-program-in-bioscience/
0
0
1
Pretty strong case for open review processes.
add a skeleton here at some point
about 1 month ago
0
3
0
reposted by
Avi Flamholz
Chikae Tatsumi
about 1 month ago
OIST is hiring Open-Rank Faculty!! This call is open to several fields, including Ecology, Environmental Science, and Earth Science🌏🌳🐦🐟🐝🦠 Come be part of a truly diverse and inspiring community!!
add a skeleton here at some point
1
2
1
reposted by
Avi Flamholz
Typas Lab
about 2 months ago
EMBL is back on hiring faculty! Check out the multiple open positions: 3 PIs- 2 in Heidelberg incl. our Molecular Systems Biology Unit, 1 in Grenoble 1 Head of Unit (Cell Biology & Biophysics, Heidelberg). Closing deadlines in Sep! +3 more positions to come out then, stay tuned...
@embl.org
add a skeleton here at some point
0
19
24
reposted by
Avi Flamholz
Carrie Wessinger
about 2 months ago
Please repost and amplify ! We are hiring a faculty position in Evolutionary Genetics in the Biology Department at U of South Carolina! Check us out and come be our colleague!
sc.edu/study/colleg...
Deadline for applications is Oct 1
#AcademicJobs
#EvoBio
loading . . .
Assistant Professor position in Evolutionary Genetics - Department of Biological Sciences | University of South Carolina
https://sc.edu/study/colleges_schools/artsandsciences/biological_sciences/about/faculty_search_evolutonary_genetics.php
0
70
120
reposted by
Avi Flamholz
Anny Chung (鍾彥儀)
about 1 month ago
🍄 UGA Plant Pathology is hiring TT faculty in Mycology/Fungal Biology/Fungal Ecology at the Asst/Assc level! Please pass along this opportunity to anyone you know who may be interested. I'm on the search committee and happy to answer questions. 🍄
www.ugajobsearch.com/postings/445...
loading . . .
Assistant or Associate Professor - Fungal Biology/Mycology
The Department of Plant Pathology in the College of Agricultural and Environmental Sciences (CAES) at the University of Georgia is recruiting for the position of Assistant or Associate Professor in Fu...
https://www.ugajobsearch.com/postings/445304
1
20
35
reposted by
Avi Flamholz
about 1 month ago
⁉️ Are you our next faculty member? The Department of Earth, Environmental and Planetary Sciences at Rice University, seeks applications for a tenure-track assistant professor position. Learn more or apply by October 15th:
eeps.rice.edu/eeps-job-opp...
0
1
3
reposted by
Avi Flamholz
Julia McHugh
about 1 month ago
Full-time, 9-month, Tenure-track Assistant Professor in Paleoclimatology position at the University of Hawaii.
www.indeed.com/viewjob?jk=4...
loading . . .
Assistant Professor in Paleoclimatology - Honolulu, HI - Indeed.com
University of Hawaii
https://www.indeed.com/viewjob?jk=48f13b28552e426e&from=appshareandroid
0
28
21
reposted by
Avi Flamholz
Anthony Vecchiarelli
about 1 month ago
My MCDB dept is accepting applications for a faculty position at the Assistant Professor level! Applications Due by October 15, 2025 We welcome applications from all areas of physiology and neuroscience, spanning molecular, cellular, systems, and organismal levels.
lsa.umich.edu/mcdb/news-ev...
loading . . .
MCDB Opens Search for Faculty | U-M LSA Molecular, Cellular, and Developmental Biology (MCDB)
MCDB welcomes applications at the Assistant Professor level from outstanding biological scientists in all areas of physiology and neuroscience, spanning molecular, cellular, systems, and organismal le...
https://lsa.umich.edu/mcdb/news-events/all-news/search-news/faculty-search1.html
0
48
55
reposted by
Avi Flamholz
Jennifer Landino
about 1 month ago
Dartmouth is hiring! Come be my colleague. Biochemistry and Cell Biology is accepting applications for a tenure-track Assistant Professor position. Join us in New Hampshire for great science, nice people, and beautiful scenery ⛰️
apply.interfolio.com/171438
1
25
17
reposted by
Avi Flamholz
Yale Center for Natural Carbon Capture
about 1 month ago
📢📢📢 The Yale Dept. of Earth & Planetary Sciences has opened a search for YCNCC Faculty and Asst/Assoc/Professor with a focus on marine and other geochemical CDR. 🌊🌊🌊 🪨🪨🪨 Details via the below link. Candidate review begins 10/1. Please share widely!!
naturalcarboncapture.yale.edu/about/opport...
0
6
7
something I've learned starting a lab and advertising RA positions -- so many talented, motivated, educated young scientists out there looking for work
about 1 month ago
0
1
0
FYI --
www.rockefeller.edu/our-scientis...
loading . . .
Faculty recruitment - Our Scientists
https://www.rockefeller.edu/our-scientists/faculty-recruitment/
about 1 month ago
0
1
0
Lab retreat time
about 2 months ago
0
5
0
Congrats to Albert (2nd pic) on a great poster culminating a summer of thoughtful work. Only 2 weeks left!
add a skeleton here at some point
about 2 months ago
0
1
0
reposted by
Avi Flamholz
Danny Colligan
2 months ago
In my review of Spears and Geruso's book "After the Spike" for Jacobin, I attempt to confront what I consider the core of their argument, which is why declining global population would be undesirable, and I find their arguments unpersuasive.
jacobin.com/2025/07/demo...
loading . . .
Why Should We Worry About Declining Birth Rates?
Declining birth rates around the world may pose new challenges for humanity. A new book on the topic by Elon Musk–funded economists indulges in questionable philosophy and sci-fi speculation that fail...
https://jacobin.com/2025/07/demography-fertility-population-crisis-longtermism
1
8
7
calibration of calorimetry to chemical oxidant demand seems pretty useful and significant
www.sciencedirect.com/science/arti...
loading . . .
Chemical Oxygen Demand Can Be Converted to Gross Energy for Food Items Using a Linear Regression Model
Human and microbial metabolism are distinct disciplines. Terminology, metrics, and methodologies have been developed separately. Therefore, combining …
https://www.sciencedirect.com/science/article/pii/S0022316622000414?via%3Dihub
2 months ago
0
2
0
Congrats
@kiseokmicro.bsky.social
add a skeleton here at some point
2 months ago
0
1
0
Amazing opportunity
add a skeleton here at some point
2 months ago
0
1
1
Join us! A few more days to register.
add a skeleton here at some point
3 months ago
0
4
0
Seems to me the problem with AI + teaching is evaluation and not learning
3 months ago
0
2
0
@rockefelleruniv.bsky.social
I heard a rumor that Gunther Blobel had some kumquat trees in RRB — does anyone know if they are still alive?
3 months ago
1
1
0
At least ranked choice makes it clear how ignorant we are about correlations
add a skeleton here at some point
3 months ago
0
0
0
Today in NYC — a city with ~5mil registered voters — we’re making news out of polls with 800 respondents.
3 months ago
1
0
1
Apparently
@rockefelleruniv.bsky.social
has a greenhouse.
3 months ago
1
5
0
lab website is up
www.rockefeller.edu/research/198...
loading . . .
Laboratory of Environmental Microbiology - Research
We study & engineer the roles of microbes in the global carbon cycle. Some projects in our group are motivated by engineering goals, aiming to build carbon negative technologies using autotrophic (CO2...
https://www.rockefeller.edu/research/198048-laboratory-of-environmental-microbiology/
4 months ago
0
6
0
reposted by
Avi Flamholz
SeppeKuehnLab
5 months ago
youtu.be/6ZHWIYHlXOs?...
loading . . .
Land of Hope and Dreams
YouTube video by Bruce Springsteen
https://youtu.be/6ZHWIYHlXOs?si=eGfeePHIR8H4gQfx
0
2
1
of course my "responsible conduct of research" course starts with IP protection yet again (3rd institution). quite a moral vacuum we built in american science
5 months ago
0
0
0
reposted by
Avi Flamholz
Jürgen Zanghellini
5 months ago
🚨 Last call!
#MPA2025
@univie.ac.at
Abstract submission for the Metabolic Pathway Analysis Conference closes today! Don’t miss your chance to join a stellar lineup, including invited speakers
@chmoei.bsky.social
&
@flamholz.bsky.social
Submit now 👉
univie.eventsair.com/Presentation...
2
5
2
Dear synbio bsky -- this Earth Day paper drop from Sam Lovat et al. is worth your time.
add a skeleton here at some point
5 months ago
0
4
0
reposted by
Avi Flamholz
The Rockefeller University
5 months ago
This
#EarthDay
we are highlighting Rockefeller's Avi Flamholz, who is dedicated to leveraging microbial forces to combat climate change. Understanding how communities of microbes release and absorb carbon will help lead to more accurate climate models.
www.rockefeller.edu/news/36919-n...
loading . . .
New faculty member studies how to leverage microbial forces to combat climate change - News
The air we breathe is a direct result of the dirt under our feet. Trillions upon trillions of soil bacteria break down organic matter, releasing carbon dioxide and other potent greenhouse gases; photo...
https://www.rockefeller.edu/news/36919-new-faculty-member-studies-how-to-leverage-microbial-forces-to-combat-climate-change/
0
2
2
reposted by
Avi Flamholz
PopBio on the Dark Side
5 months ago
Join us online for our second seminar this Thursday 1pm AEST. Akshit Goyal
@akshitg.bsky.social
(ICTS) will present: "Predicting Ecosystem Responses to Perturbations via a Geometric Approach" Sign up to receive the zoom link
forms.gle/XzypgbUp53fW...
NB. Time changes in SE Aus from last month!
1
21
12
reposted by
Avi Flamholz
Paul Wennberg
6 months ago
“So this is my radical proposal for universities: Act like universities, not like businesses.“
www.nytimes.com/2025/04/14/o...
loading . . .
Opinion | This Is How Universities Can Escape Trump’s Trap, If They Dare
It’s been tried in other countries facing authoritarian crackdowns. It works.
https://www.nytimes.com/2025/04/14/opinion/trump-higher-education.html?smid=nytcore-ios-share
0
9
1
Nice paper using modern Cyanobacteria + genetics to reason about the early earth and the evolution of light harvesting complexes (phycobillosomes)
www.nature.com/articles/s41...
loading . . .
Archaean green-light environments drove the evolution of cyanobacteria’s light-harvesting system - Nature Ecology & Evolution
Cyanobacteria use both chlorophylls and phycobilins to absorb light energy, and authors here use cultivation experiments, numerical simulations and protein phylogenetics to argue that cyanobacteria ev...
https://www.nature.com/articles/s41559-025-02637-3
6 months ago
0
2
0
reposted by
Avi Flamholz
Christian Frankenberg
6 months ago
Recent gains in global terrestrial carbon stocks are mostly stored in nonliving pools | Science
www.science.org/doi/10.1126/...
loading . . .
Recent gains in global terrestrial carbon stocks are mostly stored in nonliving pools
Terrestrial sequestration of carbon has mitigated ≈30% of anthropogenic carbon emissions. However, its distribution across different pools, live or dead biomass and soil and sedimentary organic carbon...
https://www.science.org/doi/10.1126/science.adk1637
1
14
8
reposted by
Avi Flamholz
Proceedings of the National Academy of Sciences
6 months ago
US grass-fed beef is as carbon intensive as industrial beef, even after correcting for soil sequestration from rangeland grazing. Operational emissions of grass-fed beef are 3–43 times higher than pork, poultry, cheese, milk, or plants. In PNAS:
www.pnas.org/doi/10.1073/...
0
5
4
congrats
@yinonbaron.bsky.social
this is a big one
add a skeleton here at some point
6 months ago
0
4
0
Glad this paper is out. The review was quite an adventure.
add a skeleton here at some point
6 months ago
1
6
2
Not that I disagree with any of these pts (would have to see data), but let's not lean so hard on a utilitarian justification for science. We produce minds that can think clearly to learn truths about the universe.
add a skeleton here at some point
7 months ago
0
3
0
Inheritance
7 months ago
0
9
0
In my view, the breakthroughs are secondary to preserving the culture of truth-seeking. Always, but especially right now.
add a skeleton here at some point
7 months ago
0
3
0
Science is not just a process that occasionally produces breakthroughs. It’s a practice dedicated to free inquiry and self-criticism in pursuit of fundamental material understanding of the universe (“the truth”).
7 months ago
0
3
2
no kings for nyc
7 months ago
0
1
0
reposted by
Avi Flamholz
Elena Litchman
7 months ago
NSF employees were unlawfully reclassified from career to probationary, and then fired.
www.reuters.com/world/us/us-...
loading . . .
US science agency reclassifies hundreds of workers as probationary, US lawmaker says
National Science Foundation administrators reclassified hundreds of employees from permanent to probationary status in violation of labor contracts, according to a U.S. lawmaker and agency employee.
https://www.reuters.com/world/us/us-science-agency-reclassifies-hundreds-workers-probationary-us-lawmaker-says-2025-02-21/
10
627
390
Getting started
7 months ago
0
0
0
Getting started
7 months ago
0
6
0
at first blush this seems super impressive. anyone else have impressions?
www.sciencedirect.com/science/arti...
loading . . .
Reducing methane emissions by developing low-fumarate high-ethanol eco-friendly rice
Methane in rice paddies is mainly produced by methanogenic communities feeding on carbon from root exudates and debris. However, the dominant root sec…
https://www.sciencedirect.com/science/article/pii/S1674205225000292
8 months ago
0
1
0
interested in quantitative, environmentally-motivated microbiology research?
careers-rockefelleruniversity.icims.com/jobs/1728/re...
loading . . .
The Rockefeller University » Human ResourcesFacebookTwitterEmailFacebookTwitterEmailFacebookTwitterEmailFacebookTwitterEmailFacebookTwitterEmailFacebookTwitterEmailFacebookTwitterEmailFacebookTwitterE...
https://careers-rockefelleruniversity.icims.com/jobs/1728/research-assistant-|-laboratory-of-environmental-microbiology/job?mode=view&mobile=false&width=785&height=500&bga=true&needsRedirect=false&jan1offset=-300&jun1offset=-240
8 months ago
0
3
2
Load more
feeds!
log in