@genikhovich.bsky.social
📤 320
📥 185
📝 92
Evolution of developmental mechanisms, especially axial patterning. Experimental embryology. 🪸🪼
pinned post!
Here’s the last major paper from the PhD of
@paulknabl.bsky.social
. We were trying to understand what BMP signaling does in the sea anemone Nematostella when it is not patterning its second body axis. Check out Part 1 in BMC Biol. 2025; and here's is our Part 2
journals.plos.org/plosbiology/...
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The anti-neural role of BMP signaling is a consequence of its ancestral function in dorsoventral patterning
Bilaterian animals with centralized nervous systems have patterns of BMP signaling activity gradient that suggest an “anti-neural” ancestral role, but the evidence for this remains unclear. This study...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003803
about 23 hours ago
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Here’s the last major paper from the PhD of
@paulknabl.bsky.social
. We were trying to understand what BMP signaling does in the sea anemone Nematostella when it is not patterning its second body axis. Check out Part 1 in BMC Biol. 2025; and here's is our Part 2
journals.plos.org/plosbiology/...
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The anti-neural role of BMP signaling is a consequence of its ancestral function in dorsoventral patterning
Bilaterian animals with centralized nervous systems have patterns of BMP signaling activity gradient that suggest an “anti-neural” ancestral role, but the evidence for this remains unclear. This study...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003803
about 23 hours ago
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reposted by
Neil Shubin
1 day ago
I was honored to give the Prather Lectures— three talks in three days with time spent chatting with faculty, postdocs and students. This talk was in the room where I was a teaching fellow nearly 40 years ago.
m.youtube.com/watch?v=nfaf...
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our Inner Fish Revisited: New Insights into our Fishy Past
YouTube video by Harvard OEB
https://m.youtube.com/watch?v=nfaf-TCcqsg
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reposted by
Rob Waterhouse
22 days ago
Hox
#genes
from 40 xenacoelomorph transcriptomes and four
#genomes
academic.oup.com/gbe/article/...
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Patterns of Conservation and Loss of Hox Genes in Xenacoelomorph Lineage Since Divergence From Last Common Bilaterian Ancestor
Abstract. The explosion of body forms found in bilaterians is thought to be tied to the diversification of Hox transcription factors, which play a critical
https://academic.oup.com/gbe/article/18/4/evag094/8650924
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reposted by
Ali Seleit
17 days ago
(1/15) Thrilled to share new Evo-Devo work where we address the molecular, cellular & morphometric basis of an extreme axis segmentation program in the Japanese eel — an animal that forms 120 vertebrae.
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https://www.biorxiv.org/content/10.64898/2026.04.29.721344v1
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reposted by
Yi-Jyun Luo
24 days ago
Pleased to share our study on brachiopod genomes and bilaterian dorsal–ventral patterning, now out in Nature Communications.
doi.org/10.1038/s414...
We present the first chromosome-level genome of a brachiopod and show that the core patterning mechanism is deeply conserved across bilaterians.
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Brachiopod genome unveils the evolution of BMP signalling in bilaterian body patterning - Nature Communications
A chromosome-level brachiopod genome reveals deep conservation of BMP-mediated dorsal–ventral patterning and neural inhibition, suggesting the spiralian ancestor retained the ancestral mechanism in bi...
https://doi.org/10.1038/s41467-026-70403-5
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reposted by
Kristina Stapornwongkul
about 2 months ago
The
@vbcscitraining.bsky.social
is looking a PhD Program Manager! Needless to say this is an incredible important position. So please apply if you want to help us find, recruit and train the next generation of scientists! RT appreciated!
add a skeleton here at some point
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reposted by
Parichy Lab | Dave Parichy
about 2 months ago
Pleased to announce two new publications, in Current Biology and PNAS, from outstanding postdoc Delai (Dylan) Huang, just a week before he leaves to start his new faculty position at Zhejiang University.
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reposted by
PLOS Biology
2 months ago
The development of
#salps
differs from that of
#ascidians
in the presence of maternal cells called calymmocytes. This study of
#embryogenesis
in 2 salp species identifies distinct cleavage patterns & blastomere positioning, informing the study of their
#evolution
@plosbiology.org
🧪
plos.io/4bscc6j
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Super proud of Tanya receiving the
@gfeev.bsky.social
PhD Award. Very well deserved!
add a skeleton here at some point
2 months ago
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reposted by
Current Biology
2 months ago
Basically "Working out at the airport" We ran a special issue on fun and play in animals back in 2015
www.cell.com/current-biol...
add a skeleton here at some point
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reposted by
bioRxiv Developmental Biology
2 months ago
Division of labor between ERK and Notch signaling coordinates distinct stem cell populations during jellyfish tentacle regeneration
https://www.biorxiv.org/content/10.64898/2026.03.08.710341v1
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reposted by
bioRxiv Genomics
3 months ago
A chromosome-level reference genome for the colonial marine hydrozoan Podocoryna americana
https://www.biorxiv.org/content/10.64898/2026.03.04.709628v1
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3
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reposted by
Pawel Burkhardt
3 months ago
Thrilled to share that our preprint has been accepted in Science Advances! Grateful to an incredible team & collaborators. Link:
www.science.org/doi/10.1126/...
👏
@annaferraioli.bsky.social
@maikekittelmann.bsky.social
@msarscentre.bsky.social
@erc.europa.eu
@hfspo.bsky.social
#ctenophores
add a skeleton here at some point
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reposted by
Thibaut Brunet
3 months ago
Final version
@nature.com
of our paper describing unconventional multicellular development in a choanoflagellate inhabiting an extreme environment. A ton of new data since the first
@biorxivpreprint.bsky.social
preprint (which we've kept updating). A brief 🧵 (carried over from the old place)
add a skeleton here at some point
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www.biorxiv.org/content/10.6...
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Morphological, molecular, and functional evidence for a CNS-like oral nerve ring in the sea anemone Nematostella vectensis
The emergence of centralized nervous systems reflects a major inflection point in evolution, enabling animals to integrate diverse inputs and coordinate complex behaviors. Neural centralization is typically associated with Bilateria, whereas their sister group, Cnidaria (jellyfish, anemones, and corals), has long been thought to rely on diffuse nerve nets mediating simple reflexes. This view, reinforced by limited anatomical and molecular data, has left unresolved whether cnidarians can form localized centers for neural processing, a question sharpened by the growing recognition of their diverse behavioral repertoires. Here we show that the sea anemone Nematostella vectensis possesses an oral nerve ring composed of ganglion-like condensations, a hallmark of centralized organization. These neurons are enriched for excitatory, inhibitory, and modulatory receptors but lack sensory or ciliary markers, yielding a molecular profile most consistent with bilaterian interneurons. Genetic disruption of a conserved inhibitory receptor subunit predominantly expressed in the oral nerve ring delayed the initiation of swallowing in a novel feeding paradigm, demonstrating a potential role in behavioral regulation. Together, these findings provide converging anatomical, molecular, and functional evidence that cnidarians can assemble localized integrative centers, suggesting that key elements of neural centralization predated the cnidarian–bilaterian split. ### Competing Interest Statement The authors have declared no competing interest. Stowers Institute for Medical Research
https://www.biorxiv.org/content/10.64898/2026.01.28.701697v1
4 months ago
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reposted by
Seppe De Winter
4 months ago
We are thrilled to share our new pre-print: “System-wide extraction of cis-regulatory rules from sequence-to-function models in human neural development”. S2F-deeplearning models can accurately encode enhancers, yet decoding these models into human-interpretable rules remains a major challenge.
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reposted by
Arnone Lab
5 months ago
Exciting news to start the new year! We’re thrilled to see this work finally out in
@natecoevo.nature.com
, the result of a major collaboration between my lab and the labs of Veronica Hinman and Nacho Maeso, began many years ago with the dear José Luis Gómez-Skarmeta.
www.nature.com/articles/s41...
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reposted by
Joan J. Soto-Angel
5 months ago
Never thought I'd be on
#spotify
, but here we are. More on our findings here:
doi.org/10.1073/pnas...
.
#Ctenophora
@unibergen.bsky.social
add a skeleton here at some point
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reposted by
PLOS Biology
5 months ago
How do animals with lifelong growth modulate cell
#proliferation
?
@eudaldpascual.bsky.social
@ktgarschall.bsky.social
@prhsteinmetz.bsky.social
show that starvation induces G1/G0
#CellCycle
arrest in Vasa2+/Piwi1+
#SeaAnemone
cells; cycle re-entry is TOR-dependent
@plosbiology.org
🧪
plos.io/48J2o6P
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reposted by
Fabian Rentzsch
6 months ago
Our paper on the role of neurons in Nematostella head regeneration is now out at
@currentbiology.bsky.social
Big thank you to all collaborators, it was a pleasure! Ectopic head regeneration after nervous system ablation in a sea anemone: Current Biology
www.cell.com/current-biol...
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Ectopic head regeneration after nervous system ablation in a sea anemone
Via genetic ablation of neurons, Mazloumi Gavgani et al. show that the nervous system is essential for defining axial polarity during whole-body regeneration in the sea anemone Nematostella vectensis.
https://www.cell.com/current-biology/fulltext/S0960-9822%2825%2901408-3
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reposted by
Yi-Jyun Luo
6 months ago
Glad to see our phoronid genome study featured on the cover of
@currentbiology.bsky.social
! It shows how genome structure can be used to test competing hypotheses of nested topology and how derived structural changes provide evidence for monophyly.
www.cell.com/current-biol...
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Here we go again 😄
add a skeleton here at some point
6 months ago
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2
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reposted by
A. Sánchez Alvarado
7 months ago
Metamorphosis in Schizocardium californicum drives dramatic reorganization of cell types, with adult structures forming through transcriptional reprogramming of larval cells rather than their wholesale replacement. @paul.bump.bsky.social
@lowelab.bsky.social
www.biorxiv.org/content/10.1...
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reposted by
Arnone Lab
7 months ago
Our study, just published in
#ScienceAdvances
and funded by
@hfspo.bsky.social
, explores the post metamorphic cell composition of the sea urchin juvenile, revealing that its body is head-like. Long considered brainless creatures, they’re all brain instead!
www.science.org/doi/10.1126/...
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Single-nucleus profiling highlights the all-brain echinoderm nervous system
A sea urchin is a head with a brain-like organization and a vertebrate-type retinal signature.
https://www.science.org/doi/10.1126/sciadv.adx7753
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reposted by
Developmental Biology
7 months ago
#DBfeature
#EvoDevo
mRNA splicing variants of the transcription factor Blimp1 differentially regulate germline genes in echinoderms "Each Blimp1 isoform has distinct functions within & between species" by Gerardo Reyes, Nathalie Oulhen, Gary Wessel
www.sciencedirect.com/science/arti...
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reposted by
Harmit Singh Malik
7 months ago
More pictures of the brilliance that is (lab manager) Aida de la Cruz with her creation.
add a skeleton here at some point
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A nice survey of membrane tags in a variety of EvoDevo models (also featuring Nematostella). Thanks to
@michalis-averof.bsky.social
for the invitation.
add a skeleton here at some point
7 months ago
0
7
0
reposted by
Development
7 months ago
Signals from the head and germinative region differentially regulate regeneration competence of the tapeworm Hymenolepis diminuta Read this
#LifelongDevSI
#OA
Research Article by Elise McCollough Nanista, Tania Rozario & colleagues
@ugaresearch.bsky.social
:
journals.biologists.com/dev/article/...
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1
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reposted by
Arnau Sebé-Pedrós
7 months ago
We are happy to share our latest work in
@nature.com
. We study the genomic and cellular basis of facultative symbiosis in Oculina patagonica - a Mediterranean coral remarkable for its ability to survive long periods without algal symbionts. Led by Shani Levy and
@xgrau.bsky.social
rdcu.be/eLbaZ
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Cool-cool-cool
add a skeleton here at some point
8 months ago
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Hi, can someone point me to good commercial polyclonal anti-FMRF amide antibody, which is not from rabbit? Ideally, tested on cnidarians. Thanks in advance!
8 months ago
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www.pnas.org/doi/10.1073/...
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Dual Bmp-negative feedback loops modulate function of both AER and ZPA to buffer and constrain postaxial digit number | PNAS
Several lines of evidence indicate that posterior (postaxial) digit number in tetrapod vertebrates is constrained to the pentadactyl state by inter...
https://www.pnas.org/doi/10.1073/pnas.2427249122
8 months ago
0
1
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Sanjay's amazing story is available on
www.biorxiv.org/content/10.1...
Congratulations to
@sanjay-n.bsky.social
,
@ulrichtechnau.bsky.social
and everyone else 🎉
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Notch coordinates self-organization of germ layers and axial polarity in cnidarian gastruloids
Dissociation and reaggregation experiments in several animal systems have revealed the stunning capacity of self-organization. Reaggregated early gastrula cells (here called gastruloids) of the sea an...
https://www.biorxiv.org/content/10.1101/2025.09.09.675057v1.full
8 months ago
1
10
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Congratulations to Dr. Paul Knabl
@paulknabl.bsky.social
Fantastic work and excellent defense!
8 months ago
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I don't know about "twice". My memory is crappier...
add a skeleton here at some point
9 months ago
0
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www.nature.com/articles/s41...
Cool paper by
@emmanuelhaillot.bsky.social
et al. from Uli Technau's group.
@tclebedeva.bsky.social
and I were also involved 🙃
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Segregation of endoderm and mesoderm germ layer identities in the diploblast Nematostella vectensis - Nature Communications
Recent work suggested that diploblast embryos (Cnidaria) may have germ layers that are similar to those seen in bilaterians, but how these are specified remained unclear. Here, they use scRNA-seq and ...
https://www.nature.com/articles/s41467-025-63287-4
9 months ago
0
18
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reposted by
Nature
9 months ago
Nature research paper: The genomic origin of the unique chaetognath body plan
go.nature.com/3HAsyyV
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The genomic origin of the unique chaetognath body plan - Nature
Genomic, single-cell transcriptomic and epigenetic analyses show that chaetognaths, following extensive gene loss in the gnathiferan lineage, relied on newly evolved genes and lineage-specific tandem duplications, not caused by a whole-genome duplication event, to shape their distinctive body plan.
https://go.nature.com/3HAsyyV
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www.biorxiv.org/content/10.1...
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Loss of Twist impairs tentacle development and induces epithelial neoplasia in the sea anemone Nematostella vectensis
The basic helix-loop helix transcription factor Twist plays diverse roles in mesodermal development across bilaterians, but its function in cnidarians remains unclear. Here, we investigate the role of...
https://www.biorxiv.org/content/10.1101/2025.08.09.669484v1
9 months ago
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5
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www.biorxiv.org/content/10.1...
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Depletion of a neural cell adhesion molecule disrupts both epithelial and germ layer identity in sea anemone embryos
Assembly of cells into epithelial layers marks the early steps of tissue organization and embryonic development in most animals. Although several conserved proteins are known to be essential for epith...
https://www.biorxiv.org/content/10.1101/2025.08.03.668367v1#ref-27
10 months ago
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5
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reposted by
Pawel Burkhardt
10 months ago
Ctenophores possess a unique aboral organ that acts as a multisensory center, controlling complex behaviors. We’ve now created a ctenophore model integrated with our 3D volume EM data. Puts it into perspective. Check out our recent work here:
www.biorxiv.org/content/10.1...
#ctenophores
#volumeEM
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www.biorxiv.org/content/10.1...
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Gastruloids employ an alternative morphogenetic route to generate a posterior body axis on adherent substrates
Morphogenesis emerges from the integration of genetic programs with environmental signals, yet studying this interplay in embryos remains challenging due to the inherent complexity of embryonic system...
https://www.biorxiv.org/content/10.1101/2025.08.04.668470v1
10 months ago
0
0
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reposted by
James Briscoe
10 months ago
A Summer reading recommendation: new primer in
@dev-journal.bsky.social
explains how dynamical systems theory unlocks the logic of developmental patterning Everything from bistable switches & oscillators to phase portraits & more with Python code to explore
journals.biologists.com/dev/article/...
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From genes to patterns: five key dynamical systems concepts to decode developmental regulatory mechanisms
Summary: Dynamical systems theory provides a powerful quantitative and intuitive framework to understand developmental processes. This Primer brings key concepts of this framework to the ever-growing ...
https://journals.biologists.com/dev/article/152/14/dev204617/368764/From-genes-to-patterns-five-key-dynamical-systems
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reposted by
Tiago Simões
10 months ago
A rare job opportunity for Invertebrate Zoology:
fieldmuseum.hrmdirect.com/employment/j...
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Assistant Curator of Invertebrate Zoology, Careers At Field Museum
Position Assistant Curator of Invertebrate Zoology FLSA Status Exempt Department Negaunee Integrative Research Center Our Mission Since the 1893 World Columbian Exposition our organization has aimed...
https://fieldmuseum.hrmdirect.com/employment/job-opening.php?req=3457892&req_loc=919166&&nohd&fbclid=IwQ0xDSwLs1GJjbGNrAuzUW2V4dG4DYWVtAjExAAEeUxM4o1aIW8pqi3sB59NxzXqG4n6hmvz7bw7FhnnkmHak6BZSkP0lVxS0PiA_aem_BP9m-FzUotCPySAj516YGA#job
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reposted by
Rebecca R Helm
11 months ago
BEHOLD! One of Earth's greatest lineages of life: the lil wiggle arm guys, Meteora. These single-celled critters, originally found in deep-sea sediments, are SO DIFFERENT from other lifeforms on Earth that they're likely in their own kingdom (as in, the Animal Kingdom, the Plant Kingdom etc). 🧪🌿
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Tsuyo's cool paper on Wnt3 being both a canonical and a PCP Wnt in Clytia is out
doi.org/10.7554/eLif...
Congratulations to everyone involved!
@biodev-vlfr.bsky.social
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Planar cell polarity coordination in a cnidarian embryo provides clues to animal body axis evolution
The jellyfish embryonic body axis is globally coordinated by conserved planar cell polarity (PCP) mechanisms and oriented by localised Wnt3 in two steps, highlighting PCP’s role in animal axis evoluti...
https://doi.org/10.7554/eLife.104508.3
10 months ago
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Uri does really cool stuff in Hydractinia
add a skeleton here at some point
11 months ago
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David’s
@davidmoersdorf.bsky.social
cool paper about the role of Chordin in BMP signaling in the sea anemone Nematostella is finally out
www.science.org/doi/10.1126/...
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Chordin-mediated BMP shuttling patterns the secondary body axis in a cnidarian
Chordin-mediated BMP shuttling is the candidate mechanism for generating bilateral symmetry in the cnidarian-bilaterian ancestor.
https://www.science.org/doi/10.1126/sciadv.adu6347
11 months ago
5
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reposted by
Laurent Formery
12 months ago
Our brittle star patterning study is now out at EvoDevo! 🥳
doi.org/10.1186/s132...
@lowelab.bsky.social
add a skeleton here at some point
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The last part of
@paulknabl.bsky.social
's PhD is now available at
www.biorxiv.org/content/10.1...
Paul showed that BMP signaling is active in the diffuse nervous system of the sea anemone Nematostella and the box jellyfish Tripedalia. Moreover, suppression of BMP signaling in Nematostella leads...
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The anti-neural role of BMP signaling is a side effect of its global function in dorsoventral patterning
In Bilateria with centralized nervous systems (e.g. in vertebrates or arthropods), the minimum of the BMP signaling activity gradient defines the position of the central nervous system. BMP-dependent ...
https://www.biorxiv.org/content/10.1101/2025.06.08.658475v1
12 months ago
3
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Cool paper! Congratulations to
@chemamd.bsky.social
, Emanuel Haillot and everyone else involved!
www.biorxiv.org/content/10.1...
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Developmental system drift in dorsoventral patterning is linked to transitions to autonomous development in Annelida
The Bone Morphogenetic Protein (BMP) pathway is the ancestral signalling system defining the dorsoventral axis in bilaterally symmetrical animals. However, Spiralia, a large bilaterian clade including...
https://www.biorxiv.org/content/10.1101/2025.05.29.656861v1
12 months ago
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