Jose M Jimenez-Gomez
@jimenezgomez.bsky.social
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📥 494
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Jose M Jimenez-Gomez
PlantEvolution 🌱🌾
about 1 month ago
Out after peer review, collaborative study from Nordborg & Weigel labs with help from many others. Not the largest collection of new Arabidopsis thaliana genomes, but we hopefully put forward some good ideas for how to think about pangenomes and their analysis!
www.nature.com/articles/s41...
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Jose M Jimenez-Gomez
Femke de Jong
2 months ago
Like I mentioned last week I like it when plants find a way against all odds. It is not just the perseverance and adaption. But also, that we can learn something from how those pioneering plants manage to survive against all odds. 🧵1/3 🧪
#PlantScience
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Getting a little salt tolerance
Plants in a saline environment have no other choice than to adapt. Spanish and French researchers show one of those adaptions in the newly published research “Parallel evolution of salinity toleran…
https://plantenzo.net/2025/07/15/getting-a-little-salt-tolerance/
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We just published our work in
#ScienceAdvances
"Parallel evolution of salinity tolerance in Arabidopsis thaliana accessions from Cape Verde Islands"
www.science.org/doi/10.1126/...
Short summary and credits follow:
3 months ago
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Jose M Jimenez-Gomez
Felix Martinez
3 months ago
Our story about salinity tolerance in the Cape Verde islands is out in Science Advances!
@science.org
. Two independent mutations in the same gene conferred salt resistance to Arabidopsis plants! Check it out here!
www.science.org/doi/10.1126/...
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Parallel evolution of salinity tolerance in Arabidopsis thaliana accessions from Cape Verde Islands
Plants from the Cape Verde Islands evolved parallel mutations to protect from high salinity.
https://www.science.org/doi/10.1126/sciadv.adq8210
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Jose M Jimenez-Gomez
Felix Martinez
3 months ago
These were my very first experiments done at
@cbgpmadrid.bsky.social
. I still remember the excitement of
@jimenezgomez.bsky.social
and me when observing the plates and the shocking phenotype! Thanks to all the authors for the work and so happy to continue working on this!
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Jose M Jimenez-Gomez
Silvia Manrique
3 months ago
🧪Very timely, the paper from the story that
@jimenezgomez.bsky.social
explained us during
#SEG2025
was published yesterday. Congrats to all the team and specially first co-author
@laskotillean.bsky.social
! Beautiful story! 🫶🏻
add a skeleton here at some point
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Jose M Jimenez-Gomez
Plant Physiology
4 months ago
The quantitative effect of seed production triggers the end of flowering in tomato (María Jesús López-Martín , Cristina Ferrándiz , Concepción Gómez-Mena)
doi.org/10.1093/plph...
#PlantScience
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https://doi.org/10.1093/plphys/kiaf195
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Jose M Jimenez-Gomez
Kaisa Kajala
5 months ago
Our work on MYBs and WRKY regulating suberin in tomato exodermis is now out in
@jxbotany.bsky.social
! 🍅
doi.org/10.1093/jxb/...
👩🔬
@leonardojo.bsky.social
@riannekluck.bsky.social
@marianasartur.bsky.social
Sara Buti, Alex Cantó-Pastor
@bradylabs.bsky.social
🌱
#PlantScience
add a skeleton here at some point
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David Lowry
6 months ago
Twenty years ago this month Kevin Wright and I set out on an 18,000 mile journey from Durham, NC across North America to collect monkeyflowers. The seeds from that trip (my third rotation project) have given rise to major advances and scores of scientific publications over the past two decades.
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Lots of
#arabidopsis
mixed with the
#tulips
in the
#JardinBotanico
in
#Madrid
. I asked the local expert Carlos Alonso-Blanco: they likely came from Holland with the bulbs or the soil 🤦🏻
5 months ago
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Jose M Jimenez-Gomez
Rodrigo Reis
6 months ago
Amazing resource for the Arabidopsis and plant community
www.cell.com/cell/fulltex...
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An Arabidopsis single-nucleus atlas decodes leaf senescence and nutrient allocation
A comprehensive single-nucleus transcriptomic atlas of Arabidopsis across multiple tissues enables the quantification of leaf cell aging state at a single-cell level, highlighting the senescence-relat...
https://www.cell.com/cell/fulltext/S0092-8674(25)00297-1?rss=yes
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Jose M Jimenez-Gomez
Andreas P.M. Weber 🌾🌱🧬
6 months ago
Lots of cool new features at the BAR ePlant Browser, such as ecotype SNP data mapped to protein sequence and structure. Check it out at:
bar.utoronto.ca/eplant/
#PlantScience
@bar-plantbio.bsky.social
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Jose M Jimenez-Gomez
E. Han Tan
6 months ago
Today’s weird potato flower is one that looks like fasiflora (fa) mutants in tomato, but as usual, nothing is known about this mutation in tuber bearing Solanum. Pub with the fa mutant in tomato:
www.researchgate.net/profile/Beat...
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Jose M Jimenez-Gomez
Leonie Moyle
6 months ago
Solanum galapagense (Galápagos tomato/“tomatillo”) Isla Santiago, Galápagos
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Jose M Jimenez-Gomez
American Society of Plant Biologists
7 months ago
#ASPBPlantCellTuesday
#InBrief
#ICYMI
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Jose M Jimenez-Gomez
Yasin Dagdas
8 months ago
Dear
#plantsci
community, PLEASE HELP or RT! We are looking for a leaf specific promoter for a tissue specific CRISPR experiment in Arabidopsis. Any suggestions?
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Jose M Jimenez-Gomez
Sebastian Soyk
8 months ago
🚨Job alert: We are looking for a
#phd
student to join us
@unil.bsky.social
to study evolution & function of gene regulatory sequences in the context of crop domestication using genome editing and imaging 🌱🍅🧬.
#plantscience
#scijobs
#plantscijobs
. Apply here:
tinyurl.com/mrdpm5yf
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Cristina Ferrándiz
8 months ago
I❤️PhD defense days. We welcome our youngest doctor, Maria Jesus Lopez Martín, who has done an excellent job studying the end of flowering in tomato. Here with proud supervisors
@conchagm.bsky.social
and
@cristicris.bsky.social
, the PhD committee and all her mates at
@ibmcp.bsky.social
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Jose M Jimenez-Gomez
Etienne Bucher 🌾🧬🇪🇺
8 months ago
Fun fact I did not know: A significant proportion of liver cells are polyploid!
shalevlab.weizmann.ac.il/wp-content/u...
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Jose M Jimenez-Gomez
Jeremy Berg
8 months ago
Bluetorial-A dream and a bit of a nightmare Serving as Editor-in-Chief at Science was fascinating. I greatly enjoyed working with talented and committed editorial, news, graphics, and production staff. But the inside look into scientific publishing and AAAS was also deeply disillusioning.
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Jose M Jimenez-Gomez
PlantEvolution 🌱🌾
9 months ago
Announcing a curated collection of long-read genomes for Arabidopsis thaliana: The 1001 Genomes Plus Project. Currently 453 unique accessions/almost 600 assemblies. Interested in contributing? Please contact us!
#plantscience
www.biorxiv.org/content/10.1...
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Dan Kliebenstein
9 months ago
Mariele Lensink (coadvised with
@grey-monroe.bsky.social
) has conducted a detailed analysis of natural variation in Salicylic acid response in the Bay x Sha RIL population
biorxiv.org/cgi/content/...
. Aka Thesis Chapter 1.
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Trans-regulatory loci shape natural variation of gene expression plasticity in Arabidopsis
Organisms regulate gene expression in response to environmental cues, a process known as plasticity, to adjust to changing environments. Research into natural variation and the evolution of plasticity...
https://biorxiv.org/cgi/content/short/2024.12.20.629817v1
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Jose M Jimenez-Gomez
Otto Mas 🎙️
9 months ago
Son hormigas resolviendo un problema geométrico y es para flipar en colores.
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Jose M Jimenez-Gomez
Ignacio_Rubio-Somoza
9 months ago
#PlantScience
Come join us!, The MoRE Lab (
shorturl.at/CUwM4
) is open to support PhD candidates for these programs (
shorturl.at/FQBaI
and
shorturl.at/FmwiF
), early postdocs (
shorturl.at/KVyVv
) and senior (
shorturl.at/zkk7l
), check eligibility and get in touch!, help us spread the word, please!
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Molecular Reprogramming and Evolution | CRAG | Centre for research in agricultural Genomics
The main scope of our research is in understanding how plants interrelate with their surrounding environment. We are especially interested on the molecular mechanisms that allow plants to perceive and cope with the presence of pathogen threats. Our main line of research focuses on the cellular events triggered by the intracellular presence of pathogen-derived RNA silencing suppressors and its consequences both for plant development and defence reprogramming. Another line of research in the lab focuses on studying the evolution of hormone-mediated plant-microbe communication.
https://shorturl.at/CUwM4
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Jose M Jimenez-Gomez
Chenxin Li, PhD
10 months ago
Online course contents for Experimental Design & Analysis w/ R at UC Davis by Dr. Dan Runcie (listed as Plant Sciences 205 at UC Davis). I took it in 2017 when I was a PhD student, one of the best classes I have ever taken! Highly recommend.
deruncie.github.io/PLS205_course/
#Stats
#PlantScience
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Jose M Jimenez-Gomez
PlantEvolution 🌱🌾
11 months ago
The Salk Institute shared the sad news that Prof. Joanne Chory passed away yesterday due to complications from Parkinson’s disease. She was one of the most influential biologists of our time. And this is how I will remember Joanne, expertly guiding us on where to go. Joanne, we will miss you! ❤️
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Theo Sanderson
11 months ago
I had a try at making this
bsky-follow-finder.theo.io
Enter your handle and it will find people followed by lots of the people you follow (but not you)
add a skeleton here at some point
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Will Ratcliff
11 months ago
New preprint up! We sequenced hundreds of samples from across one of Earth's oldest living organisms - the Pando aspen clone - to understand how mutations accumulate and spread in long-lived clonal organisms. Our results were…surprising. 1/30
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New preprint from the lab! We find that Arabidopsis plants from the Cape Verde Island accumulate a disaccharide that protects them from high salinity.
www.biorxiv.org/content/10.1...
We map the gene, characterize the metabolite, and discover a case of parallel evolution in two of the islands.
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Parallel Evolution of Salinity Tolerance in Arabidopsis thaliana Accessions from Cape Verde Islands
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
https://www.biorxiv.org/content/10.1101/2024.05.21.595092v1
over 1 year ago
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Interview with
@elisabethbik.bsky.social
in
@elpais.bsky.social
. It’s very interesting to read her story.
elpais.com/proyecto-ten...
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Elisabeth Bik, experta en integridad científica: “Hay que ralentizar la publicación de artículos”
La microbióloga neerlandesa lleva más de 10 años buscando de forma voluntaria imágenes académicas duplicadas, erróneas o retocadas y advirtiendo de ello a universidades y revistas científicas
https://elpais.com/proyecto-tendencias/2024-04-26/elisabeth-bik-experta-en-integridad-cientifica-hay-que-ralentizar-la-publicacion-de-articulos.html
over 1 year ago
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