Marie Binvignat
@mbinvignat.bsky.social
📤 50
📥 87
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MD. PhD in Systems Immunology Sorbonne University Rheumatology Fellow AP-HP
Thrilled to share our new paper comparing different LLMs to extract TNFi reasons and treatment trajectories from UCSF de-identified EHR data with
@bmeow19.bsky.social
, A. Garcia-Agundez and
@jyazdanymd.bsky.social
published in JAMIA open.
academic.oup.com/jamiaopen/ar..
.
@ucsf-bchsi.bsky.social
about 1 month ago
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Marie Binvignat
Nature Portfolio
about 1 month ago
A paper in Nature describes an AI system that can prove complex mathematical theories. The system, Google DeepMind’s AlphaProof, has achieved a silver medal-worthy performance at the 2024 International Mathematics Olympiad.
go.nature.com/4qUObvN
🧪
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Marie Binvignat
Alison Bays, MD (she/her)
about 2 months ago
The T cells in these patients showed increased metabolic activity. Elevated levels of inflammatory molecules (IL-6, IL-12, and type I interferon) may be driving the aggressive T cell behavior.
#ACR25
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reposted by
Marie Binvignat
JAMA
2 months ago
Atul Butte, MD, PhD, helped define the field of translational bioinformatics and inspired countless colleagues and trainees. He will be remembered for his brilliant mind, infectious optimism, generous mentorship.
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Remembering Atul Butte
This Medical News article is in remembrance of Atul Butte, MD, PhD, a pioneer in using data science to improve health.
https://jamanetwork.com/journals/jama/fullarticle/10.1001/jama.2025.17479?guestAccessKey=ade8fdb2-433b-4d2c-91bd-c7397cafdbfe
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Marie Binvignat
Manuel M. Gómez de las Heras
4 months ago
Fresh from the oven 🧨💥 We show that CD4 T cells, especially Tregs, control host-microbiota symbiosis and intestinal barrier integrity to prevent inflammaging, tissue senescence and aging-related multimorbidity 🔥 👵🏻
www.science.org/doi/10.1126/...
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CD4 T cell therapy counteracts inflammaging and senescence by preserving gut barrier integrity
Treg cells safeguard the intestinal barrier to prevent inflammaging and senescence in a mouse model of premature aging.
https://www.science.org/doi/10.1126/sciimmunol.adv0985
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Congrats to
@mariamarcosalvador.bsky.social
on her first publication, just out in
@oacjournal.bsky.social
! A systematic literature review on TCR and HLA in osteoarthritis: 🔗
www.oarsijournal.com/article/S106...
@enkrnita.bsky.social
@jeremiesellam.bsky.social
@sorbonne-universite.fr
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T-cell receptor repertoire and HLA in osteoarthritis: A systematic literature review
The aim of this systematic literature review was to provide a comprehensive overview of T-Cell Receptor (TCR) mediated immunity research in osteoarthritis (OA).
https://www.oarsijournal.com/article/S1063-4584(25)01129-X/fulltext
3 months ago
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Marie Binvignat
UCSF
6 months ago
The UCSF community mourns the passing of Atul Butte, MD, PhD, a bold thinker, inspiring mentor and founding director of the Bakar Computational Health Sciences Institute.
tiny.ucsf.edu/tGz3QY
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UCSF Bioinformatics Pioneer Atul Butte Dies at 55
Atul Butte, who championed the use of big data in science and health care and inspired a generation of trainees at UC San Francisco and beyond to pursue the fields he pioneered — translational and cli...
https://tiny.ucsf.edu/tGz3QY
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reposted by
Marie Binvignat
Waggoner Lab
3 months ago
Review
@natrevrheum.nature.com
@deepakarao.bsky.social
Immune-cell profiling to guide stratification and treatment of patients with rheumatic diseases
www.nature.com/articles/s41...
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Immune-cell profiling to guide stratification and treatment of patients with rheumatic diseases - Nature Reviews Rheumatology
In this Review article, the potential of cytometry- and single-cell RNA sequencing-based immune profiling for aiding the diagnosis and personalized treatment of rheumatic diseases is discussed.
https://www.nature.com/articles/s41584-025-01291-0
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Marie Binvignat
Seth Thomas Scanlon
6 months ago
Recently in
#Science
#Immunology
: Van der Veeken & al @ IMP
@viennabiocenter.bsky.social
generated 🐁 w auxin-inducible degradable
#Foxp3
! Tissue
#Tregs
minimally unaffected @ homeostasis but highly dependent on continuous Foxp3 activity in models of
#autoimmunity
,
#viral
#infection
, &
#cancer
!
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Inducible protein degradation reveals inflammation-dependent function of the Treg cell lineage–defining transcription factor Foxp3
Acute Foxp3 protein depletion selectively affects Treg cells responding to type 1 inflammation.
https://www.science.org/doi/10.1126/sciimmunol.adr7057
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Marie Binvignat
Osteoarthritis and Cartilage Journal
7 months ago
🚨 NEW 🚨 🤩 This month's Editors Choice (Clinical) is about intestinal health and hand
#osteoarthritis
Read more from
@mbinvignat.bsky.social
@jeremiesellam.bsky.social
-
www.oarsijournal.com/article/S106...
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Check out our new editorial on molecular endotypes and theratypes in osteoarthritis with
@jeremiesellam.bsky.social
, just out in Annals of the Rheumatic Diseases
ard.eular.org/article/S000...
@crsa-paris.bsky.social
@sorbonne-universite.fr
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Molecular endotypes and theratypes in osteoarthritis: transforming a concept into reality with deep learning and multiomics
Osteoarthritis (OA) is now understood as a heterogeneous disease in many respects, including its clinical presentation, underlying pathophysiological mechanisms, and response to treatments. Distinct p...
https://ard.eular.org/article/S0003-4967(25)00822-2/abstract
7 months ago
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reposted by
Marie Binvignat
UCSF
8 months ago
We’re proud to celebrate
@atulbutte.bsky.social
on his election to the American Academy of Arts and Sciences, one of the nation’s oldest honor societies. A leader in biomedical data science, his work is reshaping how we diagnose and treat disease.
tiny.ucsf.edu/CUz7gN
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UCSF Scientist Receives High Honor for Exceptional Career
Researcher and campus leader Atul Butte, MD, PhD, has been recognized for his outstanding career in the computational and health sciences with induction into the American Academy of Arts and Sciences,...
https://tiny.ucsf.edu/CUz7gN
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Happy to share our new article on Intestinal Permeability serum biomarkers in Erosive hand OA with
@jeremiesellam.bsky.social
@larhumato.bsky.social
@enkrnita.bsky.social
and team Read the paper here:
www.oarsijournal.com/article/S106...
@crsa-paris.bsky.social
@oacjournal.bsky.social
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Serum intestinal permeability biomarkers are associated with erosive hand osteoarthritis and radiographic severity: results from the DIGICOD cohort
To investigate the association between intestinal permeability alteration and erosive hand osteoarthritis (EHOA).
https://www.oarsijournal.com/article/S1063-4584(25)00822-2/fulltext
8 months ago
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reposted by
Marie Binvignat
Nature Reviews Rheumatology
10 months ago
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Antigen-driven T cell responses in rheumatic diseases: insights from T cell receptor repertoire studies
Nature Reviews Rheumatology, Published online: 07 February 2025; doi:10.1038/s41584-025-01218-9Garrido-Mesa and Brown review findings from TCR profiling studies in rheumatic diseases and discuss how improved study design might help elicit information…
https://bit.ly/3Es705I
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