Had a great day of science at @enasequence.bsky.social !

🔔 Join the #ERGAPlenary next Monday to learn about #biodiversity genomes at @enasequence.bsky.social & the #ERGA Data Portal - talk by Joana Pauperio and Alexey Sokolov from @ebi.embl.org 📅 17/11 at 15:00 CET 🔗 www.erga-biodiversity.eu/post/biodive... #Data #genomes #ENA @ebpgenome.bsky.social

We’re seeing delays in ENA assembly processing & INSDC data exchange outwards due to a surge in recent submissions. Processing should return to normal soon, but we can’t give a timeline for assembly exchange with INSDC partners. Thanks for your patience updates will follow once normality is restored

Listen to the latest episode of #GenomicConnections featuring Joana Pauperio, Biodiversity Curator at @enasequence.bsky.social She joins @ergabiodiv.bsky.social to discuss the power of metadata and how it supports #FAIR data in biodiversity genomics. @biogeneurope.bsky.social

🎉We are excited to launch the Data Hubs Portal! 🎉 This portal provides an interface for the Data Hubs at the ENA. To find out more about the Data Hubs Portal, visit the portal: www.ebi.ac.uk/ena/datahubs/ or see this post from EMBL-EBI: www.ebi.ac.uk/about/news/u....

Dear ENA users, We are aware of an issue affecting users attempting to use the Webin Submission Portal at this URL - www.ebi.ac.uk/ena/submit/w... We believe this issue is resolved, but users may have to clear their browser cache in order to fix the issue on their side. Kind Regards, The ENA Team

📢 We’re looking for a new Team Leader! @enasequence.bsky.social is recruiting a Team Leader to shape the strategy and direction for the ENA and Biosamples open data resources. Interested?👇

Proud to be part of the family of resources that brings such immense value to the global scientific community! Check out the survey results 👇

Great Day's science visit to @enasequence.bsky.social

ENA is having its annual facilities day event! We kicked off the day getting our guests to break into groups an designing some flags they felt represented their groups!

A crisp Cambridgeshire morning. Great to be in Hinxton for the @enasequence.bsky.social Facilities Day to discuss @pathoplexus.org and database interoperability

You may have noticed that we have A LOT of posts on our feed. We have imported all our Tweets into BlueSky to make it easier for users to find their favourite posts! Please be aware, although these were all posted today, they will be marked with a "date archived" date when they were originally made

To all my extended colleagues across the extended science social-verse, @enasequence.bsky.social is also available to be followed. Content and posts pending planning!

The ENA is proud to be recongised by @globalbiodata as a core resource for the life sciences. We continually strive to provide a resource of the highest utility to our community and champion the value of open data. https://twitter.com/globalbiodata/status/1812738357270577204

The @ENASequence is truly delighted to have worked with it's partners and build this new membership program. New members will bring a truly global perspective to the INSDC and help work towards more equaitable open data sharing in genomics. https://twitter.com/emblebi/status/1792577262778290686

Very excited to share our recent publication in @MicrobioSoc Microbial Genomics describing collaborative efforts in analysing data from the European COVID-19 Data Platform. https://www.ebi.ac.uk/about/news/updates-from-data-resources/data-hubs-pathogens/

🚨🚨Service Announcement🚨🚨 From the 1st of September 2023 the ENA will be placing a rate limit on it's data retrieval APIs. After this date, rates will be limited to 50 requests per second which, if breached, they will be rejected with a "Too Many Requests" error.

Are you going to #ISMBECCB2023 ? The @ENASequence will be there, and we’re looking to engage with people who use our services! We’re also running a survey on how you use ENA Data! https://forms.gle/hZRjcpEnjGhAaVKCA

The ENA is also available to follow on LinkedIn! Be sure to follow for content, updates and longer form informative articles about our work and services! https://www.linkedin.com/company/european-nucleotide-archive/?viewAsMember=true

Unifying the search for pathogen data is a key component of this project, and a community lead goal, do not hesistate to get in touch via [email protected] ! https://twitter.com/embl/status/1676617881256067072

This has been a big project for @ENASequence and the wider @emblebi team, and an ongoing project at that. An important step for pandemic preparedness. #pathogensportal https://twitter.com/emblebi/status/1676572128701759489

Are you going to #ISMB2023? @ENASequence will be there presenting updates and ongoing work, but we also seek to speak to people about using data from the ENA and our service? Let us know if you'll be there! Don't forget we are still capturing feedback too: https://t.co/gpatiZSw5O

We've already captured a wide array of responses in our Data Use Survey. Make sure you don't miss your chance to make your voice heard! https://twitter.com/ENASequence/status/1661392292266008576

Reminder to feedback on how you use the ENA services for data retrieval via our survey! Your feedback is incredibly valuable and will shape the future of our services. https://docs.google.com/forms/d/e/1FAIpQLScCAv31_tKiNUwBog1Cm46ibArgtF2ufNoF0Nwm3lsgcYrWjg/viewform

Our data useage survey is still open to responses! Please do take a few minutes out of your day to provide us with invaluable insights into how our open nucleotide is used. https://twitter.com/ENASequence/status/1661392292266008576

Spatiotemportal data is now mandatory for all ENA samples as of today! A major step for improving nucleotide metadata. https://twitter.com/ENASequence/status/1663558575279702019

Reminder to feedback on how you use the ENA services for data retrieval via our survey! Your feedback is incredibly valuable and will shape the future of our services. https://docs.google.com/forms/d/e/1FAIpQLScCAv31_tKiNUwBog1Cm46ibArgtF2ufNoF0Nwm3lsgcYrWjg/viewform

As per our previous announcement, effective from the 1st June 2023, mandatory spatiotemportal information will be in palce for all new samples submitted to the ENA. Quote tweet for more info. Join our announcement mailing list to never miss another update: https://t.co/so8icwP4eK https://t.co/Iq...

The ENA has designed a brief Data Use Survey to better understand our users who access and download data from the ENA. We hope to make use of feedback received from this survey to understand and improve user experience. Your views matter to us! https://t.co/gpatiZSw5O

The ENA and its collaborators are excited to have this preprint out, describing our efforts in creating the SARS-CoV-2 Data Hubs. This work describes mobilisation of open SARS-CoV-2 data, the tools developed to support that mobilisation alongside the analysis efforts undertaken. https://t.co/vpS...

The ENA and its INSDC partners are set to introduce mandatory spatiotemporal information for new samples by the end of May 2023. From now, users will see spatiotemporal fields in all ENA sample checklists by default. Read the full news item here: https://t.co/NbEvyJfyFk

Nobody better to support a tricky submission than our passionate helpdesk team! https://www.ebi.ac.uk/ena/browser/support https://twitter.com/GrohmannTeresa/status/1636122894697627649

Cross-linking life science infrastructures for molecular and taxonomic data together with @WRMarineSpecies, @EukRef, @OBISNetwork and @GBIF. A fantastic, productive @BlueCloudEU workshop in synergy with #H2020 projects @Bicikl_H2020, @EU_AtlantECO and DTO-Bioflow!

🚨Service Update🚨 We will be making some changes to what taxon IDs are considered submittable in the near future. For all submissions, except "clone or isolate" assemblies, we will no longer require a full binomial name, but the taxon ID must still be of species rank.

1/9 This #tweetorial will run you through umbrella studies at the ENA. As you may already know, a study groups together data submitted to the archive and controls its release date. Umbrella studies are study objects in the ENA which provide hierarchical grouping of other studies

Happy New Year from everyone @ENASequence! We’re looking forward to a 2023 filled with open data!

The ENA is incredibly proud and honored to be recognised by @globalbiodata as a critical resource for the life sciences and biomedical science across the world! We stand alongside many amazing resources and hope to have collectively sustainable future. https://t.co/sKkzPT0B5y

🚨🚨Christmas Service Update 🚨🚨 Between 21st December 2022 and 2nd January 2023 ENA services such as submissions and retrieval will continue to be available.

The first cohort study linking data from different categories for SARS-CoV-2 is now available in the Pathogens Portal Cohort Browser. Thanks to @erasmusmcintl for providing the first dataset through the @ReCoDID2 project. https://www.ebi.ac.uk/ena/pathogens/v2/cohorts

🚨 The latest ENA NAR DB issue paper has been published: https://doi.org/10.1093/nar/gkac1051 🚨 It provides a summary of ENA content and services, an update on our data presentation and submissions systems, and some selected developments from the last year.

Congrats to everyone who got this right! Webin-CLI is the only way to submit assemblies and genomes to the ENA! We're sorry to inform 25% of you that Fax is now a deprecated submission route for sequence records. https://twitter.com/ENASequence/status/1598282077580906497

Pop Quiz! How do you submit genome assemblies to the ENA?

It was great to visit @INMEGEN with some of the @ENASequence team to do some hands on training and talk about open data in Latin America!

Happy Halloween from the ENA Team!

Join our workshop on 6 November at @iscb-LA SOIBIO BioNetMX. We'll demonstrate real-life examples of open data sharing, its benefits & how to guides. We are committed to training for sustainable, FAIR, & #opendata. Register for the conference to join: https://www.iscb.org/la2022-register

Congratulations to #NobelPrize winner Svante Pääbo for for his work on the genomes of extinct hominins and human evolution. Did you know that the read data underpinning his 2010 paper "A Draft Sequence of the Neandertal Genome" was submitted to the ENA? https://t.co/Er5qat3AU3

🚨🚨Attention ENA Users!🚨🚨 If you are experiencing download issues through FTP or Aspera, or need an IP address whitelisted to access our transfer services, users external to EBI can now raise tickets with our Technical Services Cluster directly: https://t.co/B1uZKRZ38m

Following on from our #tweetorial on programmatic submissions, we'd like to introduce our new Webin Rest V2 API. Here's a link to our recent #tweetorial on programmatic submission: https://twitter.com/ENASequence/status/1559834710225965057

Interested in building an automated submission pipeline? Get familiar with programmatic submission through our #tweetorial 👇 https://twitter.com/ENASequence/status/1559834710225965057

1/14 Programmatic submissions are completed by preparing your submissions as XML documents and either sending them to ENA using a program such as cURL or using the Webin Portal. This #tweetorial will run you through submission of raw read data using the programmatic route.