Rebecca J Hall
@drrebeccajhall.bsky.social
📤 1497
📥 897
📝 259
Evolutionary microbiologist. Postdoc @IMIBirmingham. Metabolism, symbiosis, AMR.
pinned post!
Absolutely delighted to have been awarded a Royal Society University Research Fellowship! I will be moving to the University of Manchester
@mermanchester.bsky.social
to research early endosymbiont evolution
#microsky
#symbiosky
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3 months ago
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Looking forward to this!
add a skeleton here at some point
about 12 hours ago
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Rebecca J Hall
Microbiology Society
2 days ago
Applications for Vacation Studentship Grant are now open. The Society offers a limited number of awards to enable undergraduates to work on microbiological research projects during their summer vacation. The deadline for applications is 15 March 2026:
https://microb.io/4kFjubf
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Vacation Studentships
The Society offers a limited number of awards to enable undergraduates to work on microbiological research projects during their summer vacation. The scheme also gives early- and mid-career scientists the opportunity to gain supervision experience.
https://microb.io/4kFjubf
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Rebecca J Hall
Hassan Salem
3 days ago
How specific are heritable symbioses? And what can we learn from swapping obligate symbionts across host species? We address this in our latest, led by
@inespons.bsky.social
& in our collaboration w/
@microbiome.bsky.social
🦠🪲 Out today in
@natcomms.nature.com
! 1/n
www.nature.com/articles/s41...
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Rebecca J Hall
Anna Dewar
6 days ago
We understand a great deal about how and why cooperation evolves, but what about its long-term consequences? Great to see our new review on this out now in
@asn-amnat.bsky.social
!
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Rebecca J Hall
Microbial Systems Ecology Lab
8 days ago
Excited to share our new paper led by Divvya Ramesh: Limits to the evolution of metabolic dependency in spatially structured microbial communities 🧫
www.sciencedirect.com/science/arti...
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Limits to the evolution of metabolic dependency in spatially structured microbial communities
In microbial communities, evolutionary processes can lead to loss of biosynthetic pathways, creating metabolic dependencies. The Black Queen Hypothesi…
https://www.sciencedirect.com/science/article/pii/S2589004226002877?via%3Dihub
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Super cool
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7 days ago
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Rebecca J Hall
Arkadiy Garber
11 days ago
Happy to share a preprint—the last chapter of my dissertation with
@mcsymbiont.bsky.social
and Co—on what happens when bacterial endosymbionts accumulate huge numbers of pseudogenes during early genome reduction.
www.biorxiv.org/content/10.6...
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PhD projects in microbial engineering now up, including one with
@whelanfj.bsky.social
@willpjsmith.bsky.social
and me! 🦠
www.findaphd.com/phds/project...
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12 days ago
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Rebecca J Hall
Chris Knight
16 days ago
We're Hiring! We're looking for a postdoc with bioinformatics/modelling skills to join us in an exciting microbiome ecology project in Manchester (deadline 1st March)
www.jobs.manchester.ac.uk/Job/JobDetai...
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'Research Associate in Microbiome Ecology:Manchester
We wish to appoint a PostDoctoral Research Associate to an exciting project exploring the assembly, stability and function of microbial decomposer communities.
https://www.jobs.manchester.ac.uk/Job/JobDetail?JobId=34316
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Rebecca J Hall
Pierre Simon Garcia
16 days ago
Passioned by
#bioenergetics
? Do not miss our new article on the evolutionary history of oxidoreductases with G. Borrel and
@sgribaldo.bsky.social
@archaeal.bsky.social
@valdeanda.bsky.social
@pasteur.fr
@cnrs.fr
@cnrsbiologie.bsky.social
@natecoevo.nature.com
(
www.nature.com/articles/s41...
).
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Evolution and diversity of oxidoreductases involved in redox balance and energy conservation - Nature Ecology & Evolution
HORBEC are protein complexes involved in the regulation of redox balance and energy conservation. The authors develop a bioinformatic tool for HORBEC annotation in bacterial and archaeal genomes and r...
https://www.nature.com/articles/s41559-025-02969-0
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Rebecca J Hall
TARGetAMR
16 days ago
📢 Call for Abstracts! 📊 We're now accepting abstract submissions for Lightning Presentations at the TARGetAMR Conference 2026! 🧠 📅 Deadline: Friday 20th March, 5pm GMT 🔗 Submit yours here:
www.targetamr.org.uk/now-open-cal...
#TARGetAMR26
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Rebecca J Hall
Seth Bordenstein
18 days ago
academic.oup.com/jinsectscien...
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Phylosymbiosis and functional redundancy in the Drosophila (Diptera: Drosophilidae) gut microbiome and its implications for host fitness
Abstract. The gut microbiome plays a fundamental role in host ecophysiology. Numerous studies have examined microbiome composition and functionality to und
https://academic.oup.com/jinsectscience/article/26/1/ieaf114/8442951
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Rebecca J Hall
Alejandro Manzano Marín
20 days ago
This is a really cool study on one of my favourite obligate symbiotic systems: Aphid + Buchnera by
@jerrymaeda.bsky.social
,
@nancy-moran.bsky.social
, & co. A secreted
#endosymbiont
protein (SyeA, formally Yba3) essential for colonizing host cells
doi.org/10.1101/2025...
#SymbioSky
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Rebecca J Hall
Laurie Belcher
21 days ago
Calling all OrthoFinder users! We’ve just released GLADE, a tool to infer gene gains, losses, duplications, and ancestral genomes across a phylogeny. GLADE runs directly on OrthoFinder results.
www.biorxiv.org/content/10.6...
github.com/lauriebelch/...
(1/10)
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https://www.biorxiv.org/content/10.64898/2026.01.27.702036v1
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Rebecca J Hall
Hall Lab
22 days ago
We’re recruiting for an RA
@unibirmingham.bsky.social
! Support our
#microbiome
research - lab work + sample/data organisation & coordination. Looking for an organised, proactive & great team player. 🗓️ Closes 04/02/26 . To Mar 2028 Apply via UoB portal:
edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
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Research Associate - Department of Microbes, Infection and Microbiomes - 106850 - Grade 6
As a Research Associate in the Hall Lab, you will play a crucial role in supporting microbiome research initiatives aimed at enhancing our understanding of the role of early life microbes in promoting...
https://edzz.fa.em3.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_6001/job/8504/?utm_medium=jobshare&utm_source=External+Job+Share
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Rebecca J Hall
Prof Jenny Rohn
28 days ago
Cost of being female lead/corresponding author in biomedical sciences: "[T]he median amount of time spent under review is 7.4%–14.6% longer for female-authored articles than for male-authored articles" even in disciplines where women well-represented.
#AcademicSky
journals.plos.org/plosbiology/...
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Biomedical and life science articles by female researchers spend longer under review
Women are underrepresented in academia, especially in STEMM fields, at top institutions, and in senior positions. This study analyzes millions of biomedical and life science articles, revealing that f...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003574
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Rebecca J Hall
Emmanuele Severi
about 1 month ago
#microsky
Then I wonder: are there specialised exporters?
www.biorxiv.org/content/10.6...
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Metabolite toxicity as a driver of bacterial metabolite externalization
Some microbes externalize costly biosynthetic precursors in sufficient quantities to sustain a recipient population through cross-feeding. However, it is unclear whether metabolites are externalized purely for a reciprocal benefit or if metabolite externalization also plays a physiological role for the producer. Here we focus on adenine, a metabolite externalized by some strains of the phototrophic bacterium Rhodopseudomonas palustris at sufficient levels to support Escherichia coli growth. In 10 long-term monocultures and 22 cocultures pairing R. palustris with E. coli, extracellular adenine externalized by all 140 isolates screened was 1.7 - 3.4-fold higher than that by the ancestor, suggesting that there was selective pressure for adenine externalization. We hypothesized that adenine is toxic to R. palustris. The CGA0092 growth rate decreased by half in the presence of about 0.3 mM external adenine. This inhibitory effect increased by an order of magnitude when we over-expressed adenine phosphoribosyltransferase to overcome a bottleneck in the purine salvage pathway, suggesting that toxicity stems from a metabolite derived from adenine. To assess whether adenine tolerance is connected to adenine externalization, we surveyed 12 evolved isolates and 49 environmental strains that externalized different levels of adenine, revealing a significant positive correlation. Our data suggests a physiological role for externalization of costly-metabolites like adenine at the origin of cross-feeding. In addition to cross-feeding, resulting metabolic interactions could be negative, considering that even a biosynthetic precursor like adenine can be inhibitory. ### Competing Interest Statement The authors have declared no competing interest. United States Army Research Office, https://ror.org/05epdh915, W911NF-14-1-0411, W911NF-17-1-0159 U.S. National Science Foundation, MCB-1749489
https://www.biorxiv.org/content/10.64898/2026.01.17.700106v1
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Rebecca J Hall
Rachel M. Wheatley
about 1 month ago
🚨4-year fully funded PhD in the lab of
@magicmicrobe.bsky.social
(& collaborating with me!): How does iron availability shape the ability of pathogens to invade the gut microbiome? Apply by Jan 26th Advert:
research.reading.ac.uk/foodbiosyste...
How to apply:
research.reading.ac.uk/foodbiosyste...
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https://research.reading.ac.uk/foodbiosystems/wp-content/uploads/sites/145/2025/12/FBS2026-69-Sharp-rq-AD.pdf
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Rebecca J Hall
Jessica Blair
about 1 month ago
New paper just out in Microbial Genomics
@microbiologysociety.org
! As always, a great team effort! Well done all. 🤩
@imibirmingham.bsky.social
@hannahpugh.bsky.social
@leahburgess.bsky.social
@alanmcn1.bsky.social
@astimeosa.bsky.social
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reposted by
Rebecca J Hall
Hall Lab
about 1 month ago
Happy New Year – new role! 🎉 We’re looking for a PostDoc to join us in
@halllab.bsky.social
@unibirmingham.bsky.social
. Full-time, fixed-term to March 2028. Note tight closing date: 11 Jan 2026. CV + cover letter (submit via portal). Further details 👇
edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
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Research Fellow - Department of Microbes, Infection and Microbiomes - 106849 - Grade 7
To create and contribute to the creation of knowledge by undertaking a specified range of activities as part of an Investigator project funded by Wellcome, focusing on understanding microbial and diet...
https://edzz.fa.em3.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_6001/job/8503?keyword=microbiome&mode=location
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Rebecca J Hall
Gavin Thomas (he/him)
about 2 months ago
Interested in the sugars bacteria use to evade our immune system? We are looking to train a student across microbiology & biochemistry to discover the mechanisms for scavenging & recycling these sugars & and join the thriving glycobiology community in York
www.findaphd.com/phds/project...
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Breaking the surface of Pseudomonas: elucidation of the biochemical basis of pseudaminic acid transport and catabolism in bacteria (York YBDTP Project) at University of York on FindAPhD.com
PhD Project - Breaking the surface of Pseudomonas: elucidation of the biochemical basis of pseudaminic acid transport and catabolism in bacteria (York YBDTP Project) at University of York, listed on ...
https://www.findaphd.com/phds/project/breaking-the-surface-of-pseudomonas-elucidation-of-the-biochemical-basis-of-pseudaminic-acid-transport-and-catabolism-in-bacteria-york-ybdtp-project/?p189897
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Rebecca J Hall
Rachel M. Wheatley
about 1 month ago
🔊 Job Opportunity: Postdoctoral Research Fellow in Bacterial Evolution. Looking to recruit a postdoc to join a UKRI FLF-funded project on antibiotic resistance evolution in the microbiome 🦠 3 years funding, deadline 26th Jan, please share!
hrwebapp.qub.ac.uk/tlive_webrec...
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Job profile
https://hrwebapp.qub.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.open?VACANCY_ID=583503UCmS&WVID=6273090Lgx&LANG=USA
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Rebecca J Hall
Ville Friman
about 2 months ago
A four-year postdoc focusing on "plant growth-promoting bacteriophages" available in my group. Skills in metaviromics and metagenomics essential. Application deadline: 2.2.2026. For more info, see the link.
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Postdoctoral Researcher in discovering the benefits of plant growth-promoting bacteriophages
Postdoctoral Researcher in discovering the benefits of plant growth-promoting bacteriophages
https://jobs.helsinki.fi/job/Helsinki-Postdoctoral-Researcher-in-discovering-the-benefits-of-plant-growth-promoting-bacteriophages/1348942457/
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Freya Harrison
about 2 months ago
This looks like a brilliant opportunity!
#MicroSky
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Rebecca J Hall
Torsten Seemann
about 2 months ago
💾 mlst 2.25.0 has been released! Fixed a bug that missed alleles in increasingly larger schemes like senterica (thanks
@microbiologikat.bsky.social
) and updated the databases.
#bioinformatiocs
#microbiology
#genomics
github.com/tseemann/mls...
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Releases · tseemann/mlst
:id: Scan contig files against PubMLST typing schemes - tseemann/mlst
https://github.com/tseemann/mlst/releases
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Love this! (growth curves 😍)
add a skeleton here at some point
about 2 months ago
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Rebecca J Hall
Matt Hutchings
about 2 months ago
New preprint. Work led by
@ainsley-beaton.bsky.social
& Rebecca Devine. They show the highly conserved Streptomyces MtrAB two component system activates ectoine production and triggers sporulation in response to osmotic stress in Streptomyces venezuelae
www.biorxiv.org/content/10.6...
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MtrAB activates ectoine production and triggers sporulation in response to osmotic stress in Streptomyces venezuelae
The MtrAB two-component system is a master regulator of antibiotic biosynthesis in Streptomyces species. MtrA is also required for sporulation under certain growth conditions, which means that on some...
https://www.biorxiv.org/content/10.64898/2025.12.19.695424v1
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Rebecca J Hall
Guy Leonard
2 months ago
De novo genome sequence assembly of the model algal endosymbiont Micractinium conductrix derived from its host Paramecium bursaria 186b. Guy Leonard, Irma Vitonyte, Fiona R Savory, Erika M Hansson, Duncan D Cameron, Michael Brockhurst, Thomas A Richards bioRxiv doi:
doi.org/10.64898/202...
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De novo genome sequence assembly of the model algal endosymbiont Micractinium conductrix derived from its host Paramecium bursaria 186b
Endosymbiosis is a major driver of evolutionary innovation and underpins the function of diverse ecosystems. The origins and evolution of endosymbiosis are challenging to study experimentally due to t...
https://doi.org/10.64898/2025.12.15.694297
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Rebecca J Hall
Michael Brockhurst
2 months ago
It’s official: we’ve been awarded a UKRI Engineering Biology Focal Award to train the next generation of microbial bioengineer PhDs. An exciting collaboration between
@officialuom.bsky.social
@liverpooluni.bsky.social
Projects will be advertised in February 2026!
www.ukri.org/news/ukri-do...
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UKRI doctoral training investment set to power UK growth
UK Research and Innovation (UKRI) invests in next-generation doctoral training to boost UK innovation and economic growth.
https://www.ukri.org/news/ukri-doctoral-training-investment-set-to-power-uk-growth/?utm_medium=email&utm_source=govdelivery
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Rebecca J Hall
Will Smith
2 months ago
Congratulations also to MERMan's new Bicentenary Fellows, Dr.
@matthewjshepherd.bsky.social
and Dr. Ryan R Cochrane! Names on doors!!! 🎉
@mermanchester.bsky.social
@manchester.ac.uk
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Rebecca J Hall
Matt Hutchings
2 months ago
Very happy to see this remarkable work published. Led by
@tommclean.bsky.social
and
@ainsley-beaton.bsky.social
. We show how Streptomyces bacteria sense & respond to misfolded secreted proteins. A great collaboration with
@barriewilks.bsky.social
#microsky
1/2
journals.asm.org/doi/epub/10....
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The conserved two-component systems CutRS and CssRS control the protein secretion stress response in Streptomyces
https://journals.asm.org/doi/epub/10.1128/mbio.02991-25
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Rebecca J Hall
Torsten Seemann
2 months ago
💾 Shovill 1.4.1 has been released! The best way to de novo assemble microbial genomes from Illumina FASTQ. Major fixes to the SKESA module, plasmid mode for the Spades module, and more error checking.
#bioinformatiocs
#genomics
#microbiology
github.com/tseemann/sho...
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Releases · tseemann/shovill
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads - tseemann/shovill
https://github.com/tseemann/shovill/releases
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Rebecca J Hall
Morgan Feeney
2 months ago
Can you help my final year project student with her research please? If you are a student, please try her virtual escape room!
tinyurl.com/mr88k53k
If you are not a student, please share/repost to help us reach more students!
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Rebecca J Hall
Hannah Trivett
2 months ago
I am pleased to share that my first postdoc paper from the
@halllab.bsky.social
is now on bioRxiv! 🎉 We used long-read
#metagenomics
to explore how the gut microbiome and
#antimicrobialresistance
landscape shift across advanced chronic
#liverdisease
(ACLD)
www.biorxiv.org/content/10.6...
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Decoding the microbiome and resistome of advanced chronic liver disease through long-read metagenomics
Introduction - Patients with advanced chronic liver disease (ACLD) and underlying cirrhosis frequently require repeated courses of antimicrobial therapy, with both the frequency and spectrum of antimi...
https://www.biorxiv.org/content/10.64898/2025.12.09.693164v1
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Rebecca J Hall
Microbiology Society
2 months ago
We are happy to announce there will be a free crèche available at Annual Conference 2026 for children of all registered delegates. Learn how to register your child for the crèche:
microb.io/48tq0w8
#Microbio26
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Rebecca J Hall
Sara Mitri
3 months ago
Amazing dataset describing the metabolic profiles of 66 E. coli transporter knockouts by
@sulheim.bsky.social
with Peter Doubleday and
@nzamboni.bsky.social
. The tool, set up by
@lambdapp.bsky.social
and Eric Ulrich allows you to explore for yourself. Enjoy! Pre-print here:
doi.org/10.1101/2025...
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Rebecca J Hall
Lucy Crouch
3 months ago
💎MRC AIM PhD advert💎 Uncharted territory - the Akkermansia muciniphila import system. Liang Wu, David Tourigny, and I are looking for someone to work on how A. muciniphila imports mucin.
www.findaphd.com/phds/project...
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Uncharted territory - the Akkermansia muciniphila import system at University of Birmingham on FindAPhD.com
PhD Project - Uncharted territory - the Akkermansia muciniphila import system at University of Birmingham, listed on FindAPhD.com
https://www.findaphd.com/phds/project/uncharted-territory-the-akkermansia-muciniphila-import-system/?p192389
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Rebecca J Hall
Eva Heinz
3 months ago
If you're about to push these last manuscripts before wrapping up 2025, remider that our MGen Eukaryotic collection
@microbiologysociety.org
is open & growing;
#Protists
#Parasites
#Fungi
; friend or foe; all welcome 😊
#MicroSky
#IDSky
#Protistsonsky
🧬💻
www.microbiologyresearch.org/content/micr...
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Microbial Genomics of Eukaryotes | Microbiology Society
With technological advances like single-cell sequencing and long-read sequence techniques continually improving, allowing the full resolution of increasingly complex highly repetitive genomes, and wit...
https://www.microbiologyresearch.org/content/microbial-genomics-of-eukaryotes
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Rebecca J Hall
Jamie Hall
3 months ago
🚨#PhD studentship opportunity! Plasmids provide bacteria with antimicrobial resistance, but do they have more fundamental effects on behaviour? 🧫🦠💫🧟♂️ Apply for a 4y funded MRC DiMeN position with me and Jamie Wheeler
@livuni-ives.bsky.social
www.findaphd.com/phds/project...
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MRC DiMeN Doctoral Training Partnership: Resistant zombies: how drug-resistance plasmids manipulate the behaviour of the opportunistic pathogen Pseudomonas aeruginosa at University of Liverpool on Fin...
PhD Project - MRC DiMeN Doctoral Training Partnership: Resistant zombies: how drug-resistance plasmids manipulate the behaviour of the opportunistic pathogen Pseudomonas aeruginosa at University of Li...
https://www.findaphd.com/phds/project/mrc-dimen-doctoral-training-partnership-resistant-zombies-how-drug-resistance-plasmids-manipulate-the-behaviour-of-the-opportunistic-pathogen-pseudomonas-aeruginosa/?p189474
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Rebecca J Hall
Jessica Blair
3 months ago
Really excited to say that we have been awarded a BBSRC sLola! Really looking forward to kick off this project with such a fantastic team!
@webberma.bsky.social
@overtonlab.bsky.social
@bugsinblood.bsky.social
Sara Jabbari, Dong-Hyun Kim
@imibirmingham.bsky.social
www.ukri.org/news/powerin...
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Powering team science to unlock life’s secrets
Four world-class teams awarded major BBSRC sLoLa grants to push the frontiers of discovery in microbiology, photosynthesis, gene regulation and quantum biology.
https://www.ukri.org/news/powering-team-science-to-unlock-lifes-secrets/
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Absolutely delighted to have been awarded a Royal Society University Research Fellowship! I will be moving to the University of Manchester
@mermanchester.bsky.social
to research early endosymbiont evolution
#microsky
#symbiosky
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3 months ago
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Picked a wet week to start my couch to 5k..
3 months ago
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Rebecca J Hall
Mike Bottery
4 months ago
Exciting news! I have two positions open in my lab at the UoManchester: one PDRA and one Research Tech. Join our team to study evolutionary mycology and help us understand antifungal resistance in fungal pathogens. A fantastic opportunity to join the brilliant Manchester Fungal Infection Group!
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Rebecca J Hall
Willem van Schaik
3 months ago
Absolutely delighted (and proud) that
@freyaallen.bsky.social
passed her viva with minor corrections today. Thanks very much
@jessicamablair.bsky.social
@robfagan.bsky.social
for examining!
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Rebecca J Hall
Rachel M. Wheatley
4 months ago
🔊 Applications for the tenure-track illuminate global challenge fellowships at Queen’s are now open! Comes with 5 years protected research time, a PhD studentship, & 60k start-up. I had one of these before getting my FLF, happy to chat to anyone interested!
www.qub.ac.uk/Research/fel...
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Our Illuminate Global Challenges Fellowships | Research | Queen's University Belfast
https://www.qub.ac.uk/Research/fellowships-at-queens/fellowship-academy/illuminate-fellowship/
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Rebecca J Hall
INRAE UMR BF2I
4 months ago
Agnès Vallier,
@cmonegat.bsky.social
, Baptiste Vierne,
@nicolasparisot.bsky.social
, Guy Condemine, Pedro Da Silva, Xavier Jaurand,
@yschwab.bsky.social
,
@kaltenpoth-lab.bsky.social
, Abdelaziz Heddi, and
@annazaidmanremy.bsky.social
➡️
www.sciencedirect.com/science/arti...
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Bacterial tubular networks channel carbohydrates in insect endosymbiosis
Symbiosis is widespread in nature and plays a fundamental role in organism adaptation and evolution. In nutritional endosymbiosis, host cells accommod…
https://www.sciencedirect.com/science/article/pii/S0092867425011304
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Rebecca J Hall
Microbiology Society
4 months ago
There's still time to submit your abstract to Annual Conference 2026. Abstract submission closes at 23:59 GMT on 11 November 2025. For the full list of abstract submissions we welcome, visit our events page:
microb.io/AC26Abstracts
#Microbio26
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Rebecca J Hall
Christian Kost
4 months ago
#microsky
#mevosky
@spp2389.bsky.social
A PhD position is available in my lab to work on: Emergence and self-organisation of bacterial metabolism in consortia of cross-feeding bacteria. Please RT Deadline: 12.11.25 More infos 👇
shorturl.at/rAKAT
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Rebecca J Hall
Matt Hutchings
4 months ago
The bigger argument here is that we shouldn’t even be using such metrics to assess academic performance. It’s just lazy.
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Rebecca J Hall
Willem van Schaik
4 months ago
Complete nonsense. My advice to post-graduate researchers is to always preprint their work, as it will improve their visibility while the manuscript is going through a (frequently very long) peer review process.
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