Rebecca J Hall
@drrebeccajhall.bsky.social
📤 1450
📥 846
📝 235
Evolutionary microbiologist. Postdoc @IMIBirmingham. Metabolism, symbiosis, AMR.
pinned post!
A happy Friday seeing this out! I lucked out and got to work with a couple of really great students on this, Shalini and Jacob, and I’m super proud to see their hard work rewarded
#microsky
www.microbiologyresearch.org/content/jour...
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Glucose alters the evolutionary response to gentamicin in uropathogenic Escherichia coli
Urinary tract infections (UTI) are a major health and economic concern. Uropathogenic Escherichia coli (UPEC) are the leading cause of UTI, and antibiotic-resistant UPEC are increasingly common. The m...
https://www.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.001548
8 months ago
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Rebecca J Hall
Mike Bottery
7 days ago
Exciting news! I have two positions open in my lab at the UoManchester: one PDRA and one Research Tech. Join our team to study evolutionary mycology and help us understand antifungal resistance in fungal pathogens. A fantastic opportunity to join the brilliant Manchester Fungal Infection Group!
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Rebecca J Hall
Willem van Schaik
6 days ago
Absolutely delighted (and proud) that
@freyaallen.bsky.social
passed her viva with minor corrections today. Thanks very much
@jessicamablair.bsky.social
@robfagan.bsky.social
for examining!
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Rebecca J Hall
Rachel M. Wheatley
14 days ago
🔊 Applications for the tenure-track illuminate global challenge fellowships at Queen’s are now open! Comes with 5 years protected research time, a PhD studentship, & 60k start-up. I had one of these before getting my FLF, happy to chat to anyone interested!
www.qub.ac.uk/Research/fel...
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Our Illuminate Global Challenges Fellowships | Research | Queen's University Belfast
https://www.qub.ac.uk/Research/fellowships-at-queens/fellowship-academy/illuminate-fellowship/
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Rebecca J Hall
INRAE UMR BF2I
15 days ago
Agnès Vallier,
@cmonegat.bsky.social
, Baptiste Vierne,
@nicolasparisot.bsky.social
, Guy Condemine, Pedro Da Silva, Xavier Jaurand,
@yschwab.bsky.social
,
@kaltenpoth-lab.bsky.social
, Abdelaziz Heddi, and
@annazaidmanremy.bsky.social
➡️
www.sciencedirect.com/science/arti...
5/5
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Bacterial tubular networks channel carbohydrates in insect endosymbiosis
Symbiosis is widespread in nature and plays a fundamental role in organism adaptation and evolution. In nutritional endosymbiosis, host cells accommod…
https://www.sciencedirect.com/science/article/pii/S0092867425011304
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Rebecca J Hall
Microbiology Society
15 days ago
There's still time to submit your abstract to Annual Conference 2026. Abstract submission closes at 23:59 GMT on 11 November 2025. For the full list of abstract submissions we welcome, visit our events page:
microb.io/AC26Abstracts
#Microbio26
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Rebecca J Hall
Christian Kost
16 days ago
#microsky
#mevosky
@spp2389.bsky.social
A PhD position is available in my lab to work on: Emergence and self-organisation of bacterial metabolism in consortia of cross-feeding bacteria. Please RT Deadline: 12.11.25 More infos 👇
shorturl.at/rAKAT
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Matt Hutchings
17 days ago
The bigger argument here is that we shouldn’t even be using such metrics to assess academic performance. It’s just lazy.
add a skeleton here at some point
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Rebecca J Hall
Willem van Schaik
19 days ago
Complete nonsense. My advice to post-graduate researchers is to always preprint their work, as it will improve their visibility while the manuscript is going through a (frequently very long) peer review process.
add a skeleton here at some point
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Rebecca J Hall
Hannah Trivett
18 days ago
Thank you
@target-amr.bsky.social
for inviting me to share the benefits using
#QualitativeReasearch
for AMR Genomics and my experience exploring academic and clinical perspectives of infectious disease diagnostics! If you’re interested to know more, check out the talk below
youtu.be/mQ_vwEhFhRM?...
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Using qualitative research to support quantitative research in AMR genomics
YouTube video by TARGetAMR
https://youtu.be/mQ_vwEhFhRM?si=pirNDW5IzShKIb6K
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Rebecca J Hall
Freya Harrison
23 days ago
Join us in Birmingham for the annual BSAC
#AntibioticResistance
& Mechanisms workshop - excellent talks and it’s designed to make conversation & networking between attendees easy
#MicroSky
bsac.org.uk/antibiotic-r...
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Antibiotic Resistance and Mechanisms (ARM) Workshop for Researchers 2025 - The British Society for Antimicrobial Chemotherapy
https://bsac.org.uk/antibiotic-resistance-and-mechanisms-arm-workshop-for-researchers-2025/
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Rebecca J Hall
Emmanuele Severi
about 1 month ago
QUESTION: anyone knows of a published example of a gene/operon which is toxic in Pseudomonas aeruginosa if in high copy plasmids, but ok in low copy? Got plenty of examples of my own for E. coli (esp of membrane protein genes), but struggling to find for Pae… Cheers!
#microsky
#synbio
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Rebecca J Hall
Michael Brockhurst
about 1 month ago
Three Bicentenary research fellowships on offer at
@officialuom.bsky.social
@fbmh-uom.bsky.social
for exceptional ECRs with <3y postdoc experience 3yrs salary + £30k pa research expenses Do you have a great idea & want to join
@mermanchester.bsky.social
?
www.bmh.manchester.ac.uk/research/sup...
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Bicentenary Early Career Research Fellowships | Biology, Medicine and Health | University of Manchester
Find out about and apply for a Bicentenary Early Career Research Fellowship.
https://www.bmh.manchester.ac.uk/research/support/fellowships/bicentenary-early-career-research-fellowships/
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Rebecca J Hall
Tung Le
about 1 month ago
Independent research fellowships leading to tenured positions at the John Innes Centre. Repost = nice. Thank you very much!!!
add a skeleton here at some point
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Rebecca J Hall
Michelle Buckner
about 1 month ago
Job opportunity in my lab! We're looking for a post-doc to come join us for an exciting project exploring the evolution of
#AMR
and
#hypervirulence
in
#klebsiella
. Please share!!
@unibirmingham.bsky.social
Details:
www.jobs.ac.uk/job/DOV067/r...
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Research Fellow at University of Birmingham
Apply now for the Research Fellow role on jobs.ac.uk - the leading job board for higher education jobs. View details.
https://www.jobs.ac.uk/job/DOV067/research-fellow
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Rebecca J Hall
Paul Hoskisson 🧫 🦠🐸
about 1 month ago
Come and work with me and
@ariannebabina.bsky.social
on
#Streptomyces
evolution and antibiotic production Origins of a tangled bank: Adaptation and evolution in antibiotic-producing Streptomyces
www.gla.ac.uk/postgraduate...
please repost
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University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Underpinning Bioscience - Paul A Hoskisson
https://www.gla.ac.uk/postgraduate/doctoraltraining/northwestbio/projects/bioscience/paulahoskisson/
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Rebecca J Hall
Rachel M. Wheatley
about 1 month ago
🔊 Fully-funded 4yr PhD studentship with the NWB DTP, working on novel regulators of bacterial nitrogen metabolism 🦠 Primary supervisor:
@ariannebabina.bsky.social
(University of Glasgow) Co-supervisors: myself (Queen’s Belfast)+ Dónal Wall (Glasgow) 🌟 please share 🌟
www.gla.ac.uk/postgraduate...
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University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Underpinning Bioscience - Arianne Babina
https://www.gla.ac.uk/postgraduate/doctoraltraining/northwestbio/projects/bioscience/ariannebabina/
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Rebecca J Hall
Craig MacLean
about 2 months ago
New ERC funded computational postdoc position in my lab! We are looking for someone who will study the genomics of bacterial evolution using samples from experimental evolution and clinical trials. Lots of opportunities for interesting and fun collaboration!
my.corehr.com/pls/uoxrecru...
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Job Details
https://my.corehr.com/pls/uoxrecruit/erq_jobspec_version_4.display_form?p_company=10&p_internal_external=E&p_display_in_irish=N&p_process_type=&p_applicant_no=&p_form_profile_detail=&p_display_apply_ind=Y&p_refresh_search=Y&p_recruitment_id=179554
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Rebecca J Hall
Peter Mulhair
about 2 months ago
Last chance to join us next month for the
#Biodiversity25
conference. A fantastic set of speakers, mix of talks & focused workshops, and the chance to meet others in the field of biodiversity genomics 🧬 In-person registration closes next Monday 29th September! Registration 🔗:
bit.ly/4j3vAZ9
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Understanding Life: Using Largescale Biodiversity Reference Genomes — 20251027
Understanding life: Using largescale biodiversity reference genomes
https://bit.ly/4j3vAZ9
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Rebecca J Hall
Hall Lab
2 months ago
Excited to share our
@cp-cellhostmicrobe.bsky.social
led by Magda showing how Bif has co-evolved with different animal hosts 🐒🐭🐷🐦 Key takeaways: 🔹 Host ancestry + diet shape Bif evolution 🔹 Mammals enriched for carb-busting enzymes 🔹 Untapped diversity in non-human hosts = new probiotic potential
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The Department of Microbes, Infection and Microbiomes are hiring an Assistant Professor in Bacterial Genomics! Happy to have a chat if anyone wants to know more about the department/UoB
www.jobs.ac.uk/job/DOO184/a...
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Assistant Professor (Research and Education) in Bacterial Genomics at University of Birmingham
An academic position as a Assistant Professor (Research and Education) in Bacterial Genomics is being advertised on jobs.ac.uk. Click now to find more details and explore additional academic job oppor...
https://www.jobs.ac.uk/job/DOO184/assistant-professor-research-and-education-in-bacterial-genomics
2 months ago
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Rebecca J Hall
The Royal Society
2 months ago
The Royal Society's Dorothy Hodgkin Fellowship scheme is now open for applications. This scheme offers a first step into an independent research career for early career scientists who require a flexible working pattern. Find out more and apply now:
#RSGrants
royalsociety.org/grants/dorot...
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reposted by
Rebecca J Hall
Gavin Thomas (he/him)
2 months ago
Delighted with our new paper on a novel itaconate transporter in the human pathogen Pseudomonas aeruginosa, led by Javeria and Reyme.
@ybri-uoy.bsky.social
@javeriamehboob.bsky.social
@bethkw.bsky.social
A duplicated transporter on its way to itaconate selectivity
portlandpress.com/biochemj/art...
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Itaconate utilisation by the human pathogen Pseudomonas aeruginosa requires uptake via the IctPQM TRAP transporter
Pseudomonas aeruginosa PA01 is one of the major causes of disease persistence and mortality in patients with lung pathologies, relying on various host metabolites as carbon and energy sources for grow...
https://portlandpress.com/biochemj/article/482/17/BCJ20253132/236479/Itaconate-utilisation-by-the-human-pathogen
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Rebecca J Hall
Lucy van Dorp
2 months ago
Excited to say we’re hiring 😊. We’re looking for a post-doc in ancient pathogen genomics to join our friendly supportive team in London at
@ugiatucl.bsky.social
. Start date January 2026.
www.ucl.ac.uk/work-at-ucl/...
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UCL – University College London
UCL is consistently ranked as one of the top ten universities in the world (QS World University Rankings 2010-2022) and is No.2 in the UK for research power (Research Excellence Framework 2021).
https://www.ucl.ac.uk/work-at-ucl/search-ucl-jobs/details?nPostingId=15550&nPostingTargetId=37532&id=Q1KFK026203F3VBQBLO8M8M07&LG=UK&languageSelect=UK&mask=ext
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Rebecca J Hall
James McInerney
3 months ago
New preprint reveals bacteria can't just collect all resistance genes like Pokemon cards. We found mutually exclusive evolutionary pathways to multidrug resistance in E. coli & P. aeruginosa - some resistance mechanisms actively prevent others from coexisting
www.biorxiv.org/content/10.1...
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Genomic constraints shape the evolution of alternative routes to drug resistance in prokaryotes
Background Variation within the prokaryotic pangenome is not random, and natural selection that favours particular combinations of genes appears to dominate over random drift. What is less clear is wh...
https://www.biorxiv.org/content/10.1101/2025.08.20.671315v1.full
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Particularly enjoyed the lovely figures
www.biorxiv.org/content/10.1...
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Microbes release lower-value metabolites at higher rates
Microbes release a wide range of metabolites into their environment, yet the reasons for this release and the factors that influence release rates are not well understood. Here, using a combination of...
https://www.biorxiv.org/content/10.1101/2025.08.19.671024v1
3 months ago
0
3
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Rebecca J Hall
Michael Brockhurst
3 months ago
We are also hiring a 4-year postdoc to study the dynamics and evolution of mobile genetic elements in the C-fixing Icelandic host-spring microbiomes Join our exciting multidisciplinary team funded by
@ukri.org
BBSRC sLoLa
www.jobs.manchester.ac.uk/Job/JobDetai...
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reposted by
Rebecca J Hall
James Kitchens
3 months ago
Excited to share our new preprint for the tskit_arg_visualizer Python package! ARGs can sometimes feel like a black box, so
@yanwong.bsky.social
and I have been developing a method to programmatically drawing these graphs. 🔗
arxiv.org/abs/2508.03958
1/6
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tskit_arg_visualizer: interactive plotting of ancestral recombination graphs
Summary: Ancestral recombination graphs (ARGs) are a complete representation of the genetic relationships between recombining lineages and are of central importance in population genetics. Recent brea...
https://arxiv.org/abs/2508.03958
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Rebecca J Hall
Hall Lab
3 months ago
Really pleased to see this study led by
@raymondkiu.bsky.social
now published in
@natcomms.nature.com
! We show that probiotics help modulate the preterm infant 👶#microbiome - to reduce ARGs, lower MDR bacteria 🦠 & increase beneficial Bifido ✨ Huge team effort!
www.nature.com/articles/s41...
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Rebecca J Hall
Richard Lenski
3 months ago
Excited to share new
#program
, STEPS, which can simulate
#dynamics
of the E. coli Long-Term Evolution Experiment (#LTEE) or other microbes in serial transfer regime.
telliamedrevisited.wordpress.com/2025/08/12/s...
STEPS developed by
@devinmlake.bsky.social
, Zachary Matson, Minako Izutsu, and me.
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STEPS To It
Announcing a new program, called STEPS, to simulate the dynamics of evolving microbial populations.
https://telliamedrevisited.wordpress.com/2025/08/12/steps-to-it/
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reposted by
Rebecca J Hall
Kat Coyte
3 months ago
A new 4 year PostDoc position in our lab! Modeling + experiments to explore dynamics of carbon fixing hot-spring microbiomes. Part of an exciting multidisciplinary team with Sophie Nixon,
@brockhurstlab.bsky.social
& others Please share & get in touch if interested!
tinyurl.com/e7j7bha3
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Research Associate in Microbiome Ecology:Oxford Road
https://www.jobs.manchester.ac.uk/Job/JobDetail?JobId=32976&Source=JobtrainGoogle
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Rebecca J Hall
Matt Hutchings
3 months ago
Ever wondered why some antibiotics are made by Streptomyces on agar plates but not in liquid cultures? Read this work on redox control of antibiotic biosynthesis. Led by
katienoble241.bsky.social
and Rebecca Devine, and in collaboration with
@barriewilks.bsky.social
journals.asm.org/doi/10.1128/...
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https://journals.asm.org/doi/10.1128/mbio.01369-25
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Amazing seminar from
@bkoskella.bsky.social
, seems I might be a phage convert.
3 months ago
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Excellent writing retreat, thanks
@resp-micro.bsky.social
for organising! Might be recovering from the ultimate frisbee for the rest of the day…
3 months ago
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Nice to be back.
3 months ago
0
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reposted by
Rebecca J Hall
Nature Microbiology
4 months ago
#Review
A discussion on the evolution, emergence and expansion of environmental fungicide and antifungal drug resistance. 🍄
#MicroSky
🦠
@drjorhodes.com
www.nature.com/articles/s41...
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Evolution of antifungal resistance in the environment - Nature Microbiology
This Review discusses the evolution, emergence and expansion of environmental fungicide and antifungal drug resistance.
https://www.nature.com/articles/s41564-025-02055-y?utm_source=bluesky&utm_medium=social_&utm_campaign=nmicrobiol
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reposted by
Rebecca J Hall
Jessica Blair
4 months ago
This opportunity is still open but closing at the end of July!
add a skeleton here at some point
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reposted by
Rebecca J Hall
Jo Rhodes
4 months ago
Last week to apply for TWO PhDs with me and amazing supervisors at University of Birmingham The Last Of Us -
www.findaphd.com/phds/project...
Understanding pathogen diversity in maternal and neonatal populations -
www.findaphd.com/phds/project...
I’m on holiday so can’t answer queries though
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The Last of Us: Developing a Genomic Epidemiology Toolkit for Fungal Outbreaks at University of Birmingham on FindAPhD.com
PhD Project - The Last of Us: Developing a Genomic Epidemiology Toolkit for Fungal Outbreaks at University of Birmingham, listed on FindAPhD.com
https://www.findaphd.com/phds/project/the-last-of-us-developing-a-genomic-epidemiology-toolkit-for-fungal-outbreaks/?p185331
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reposted by
Rebecca J Hall
Michael Gerth
4 months ago
Two fully funded
#PhD
positions on insect
#Symbiosis
available in our lab: Spiroplasma in Neotropical Arthropods (
tinyurl.com/spiroplasma
) & Psyllid symbionts (
tinyurl.com/psyllids
). Please contact me for any questions & share widely
#symbiosky
#academicjobs
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https://tinyurl.com/4ps2a63t
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This is a really neat idea
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4 months ago
0
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reposted by
Rebecca J Hall
Cassie Bakshani
4 months ago
🚨 New preprint klaxon 🚨 We characterised the structure of a PNGaseA superfamily member from Bifidobacterium bifidum LMG13195 and highlight its preference for N-glycan structures attached to a peptide, rather than to a native or denatured protein 💫
@imibirmingham.bsky.social
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PNGaseA-mediated N-glycan stripping from peptides by infant-derived Bifidobacterium bifidum
N-glycans are highly common sources of nutrition for human colonic-dwelling bacteria. These microbes have evolved a several methods to remove N-glycans from proteins; herein we describe the biochemica...
https://www.biorxiv.org/content/10.1101/2025.07.17.665090v1
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reposted by
Rebecca J Hall
Laurie Belcher
4 months ago
OrthoFinder just dropped a major update It’s faster, more accurate, and ready for thousands of genomes Let’s break it down (1/10)
github.com/OrthoFinder/...
www.biorxiv.org/content/10.1...
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Rebecca J Hall
Willem van Schaik
4 months ago
New manuscript from the group 'IS1216 drives the evolution of pRUM-like multidrug resistance plasmids in Enterococcus faecium'
www.biorxiv.org/content/10.1...
/1
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IS1216 drives the evolution of pRUM-like multidrug resistance plasmids in Enterococcus faecium
pRUM-like plasmids are commonly found in multidrug-resistant Enterococcus faecium , but the evolution of these plasmids has not been characterised in detail. When we analysed the genome sequences of t...
https://www.biorxiv.org/content/10.1101/2025.07.10.664085v1
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Rebecca J Hall
Matt Hutchings
4 months ago
Lister Prize Awards 2026. Applications now open. Includes £300k of flexible funding over five years. Open to those working in biomedical and clinical sciences in the U.K.
lister-institute.org.uk/how-to-apply/
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How to Apply – Lister Institute
https://lister-institute.org.uk/how-to-apply/
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reposted by
Rebecca J Hall
Andrew Rambaut
4 months ago
BEAST X v10.5.0 finally released – you can't just do beta releases forever.
github.com/beast-dev/be...
Details and instructions for installing on the BEAST website:
beast.community
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www.nature.com/articles/s41...
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Addressing gaps in author and reviewer gender diversity - Nature Microbiology
We reflect on self-reported gender information for corresponding authors and reviewers at Nature Microbiology and identify actions to address disparities.
https://www.nature.com/articles/s41564-025-02066-9
4 months ago
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Lovely review!
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4 months ago
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This is cool
@filiphusnik.bsky.social
!
add a skeleton here at some point
5 months ago
0
7
2
reposted by
Rebecca J Hall
Genome Biology and Evolution
5 months ago
Heaven
@saskiahogenhout.bsky.social
et al. generated chromosome-level genomes for three psyllid species that are plant disease vectors, revealing detoxification gene expansions and genetic substructure across Europe. 🔗
doi.org/10.1093/gbe/evaf116
#genome
#entomology
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reposted by
Rebecca J Hall
Microbiology Society
5 months ago
How might sugar shape antimicrobial resistance in bacteria? Researchers from @unibirmingham investigated whether glucose might change the evolution of resistance in the leading cause of urinary tract infections, uropathogenic E.coli. Read the paper by clicking the link in our bio 🔬
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This is awesome
add a skeleton here at some point
5 months ago
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