@veupathdb.org
📤 184
📥 56
📝 80
@veupathdb.org
Release 69 is now available on beta sites, marking an exciting step forward in modernizing VEuPathDB infrastructure! 🎉 Read our new release to learn more:
beta.veupathdb.org/veupathdb.be...
And explore the beta sites for yourself!
#data
#parasites
#fungi
#vectors
26 days ago
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We will also have a poster in tonight's poster session number 500A
#Fungal26
- come learn about some of the new developments including AI integration.
about 1 month ago
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Come visit our
#FungiDB
booth at
#Fungl26
- we will be there every night. Ask questions, provide feedback, let us know about datasets, enter a user comment and much more!
about 1 month ago
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📢Help improve community knowledge by submitting a user comment on
#FungiDB
!
#Fungal26
Have a cool publication you'd like to share but lack the time? Try our new AI-powered tool for publication and gene function summaries!
fungidb.org/fungidb/app/...
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FungiDB
https://fungidb.org/fungidb/app/static-content/FGC2026.html
about 1 month ago
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@veupathdb.org
invites parasitology and protistology researchers using DBs such as PlasmoDB, ToxoDB, AmoebaDB, TriTrypDB, CryptoDB, and related DBs to a community meeting to discuss current status , updates, future plans.🧬 We want your input! 💬 Register for zoom link:
upenn.zoom.us/meeting/regi...
about 1 month ago
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🦟 Calling vector biologists! 💬 We want your input! @VectorBase will host a community meeting on Fri, March 27, to discuss current status, recent updates, and plans for VectorBase and the larger VEuPathDB project. Register for zoom link:
upenn.zoom.us/meeting/regi...
about 1 month ago
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Attention, mycology researchers, we want your input! 🍄 FungiDB will host a virtual community meeting on Thursday, March 26, 2026 at 3 pm UTC to discuss current status, updates and future plans of FungiDB and the wider
@veupathdb.org
resources. Register for zoom link:
upenn.zoom.us/meeting/regi...
about 1 month ago
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Attending the 33rd
#Fungal
Genetics Conference in Asilomar? Stop by the
#FungiDB
booth or poster
#500A
to connect with our team, get help and see what’s new in
#veupathdb
databases! See you there!
about 1 month ago
1
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📢Help improve community knowledge by submitting a user comment on
#FungiDB
! Have a cool publication you'd like to share but lack the time? Try our new AI-powered tool for publication and gene function summaries! More:
fungidb.org/fungidb/app/...
about 1 month ago
0
1
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Working on
#fungi
or
#oomycetes
? 🧫 Boost your data mining skills with expert-led virtual training through the Fungal Pathogen Genomics Virtual Course by @ConnectingSci Don’t miss out: 🗓 Apply by 16 March 2026
coursesandconferences.wellcomeconnectingscience.org/event/fungal...
about 1 month ago
1
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Help improve genome annotations for the entire research community with the
#FungiDB
User Comments Campaign 🆕 Try our AI-powered summary and gene product description tools - just add a PubMedId or upload a paper! More ➡️
fungidb.org/fungidb/app/...
about 1 month ago
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📣We’re excited to launch the
#FungiDB
User Comments Campaign in conjunction with
#FUNGAL26
! Contribute your knowledge & try our AI-powered tools for publication summaries & gene product descriptions & get a free FungiDB mug or even a T-shirt! More ➡️
fungidb.org/fungidb/app/...
about 2 months ago
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Participate in the
#Fungal
#Pathogen
#Genomics
Course (virtual) to get practical experience in data mining with online bioinformatics resources for
#fungi
and
#oomycetes
. Apply now:
coursesandconferences.wellcomeconnectingscience.org/event/fungal...
📅 Deadline: 16 March 2026
about 2 months ago
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Headed to Asilomar for the 🧬
#Fungal
#Genetics
Conference? ℹ️ Visit the
#FungiDB
help desk to learn about the bioinformatics tools & multi-omics data available for your research. We’d love to hear about your projects & show you what’s new!
#Fungal26
#genomics
#fungi
#oomycetes
#plantpathogens
2 months ago
0
2
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Working on
#fungi
or
#oomycetes
? 🧫 Boost your data mining skills with expert-led virtual training through the Fungal Pathogen Genomics Virtual Course Don’t miss out: 🗓 Apply by 16 March 2026
coursesandconferences.wellcomeconnectingscience.org/event/fungal...
2 months ago
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Attending the 🧬 Plant & Animal Genome Conference 🧬 (Jan 9–13) in San Diego? Don’t miss a
@veupathdb.org
talk! Omar Harb will present on Saturday morning in the session “Genetics and Genomics of Plant Filamentous Pathogen Effectors.”
#PAG33
3 months ago
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✨Happy New Year from the
@veupathdb.org
team! 🌟 We’re looking ahead to a great year with new data and tools, improved infrastructure, deeper community engagement, and continued efforts toward long-term financial sustainability, so we can keep being your go-to resource.
#parasites
#fungi
#vectors
4 months ago
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reposted by
ParasitesRule
4 months ago
🦠 Grad students & postdocs in parasitology: Apply now for the Biology of Parasitism (BoP): Modern Approaches course at @MBLScience. Hands-on labs, expert lectures, and cutting-edge tools. 📅 Summer 2026 | ⏰ Deadline Feb 5 🔗
mbl.edu/courses
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Big thanks to everyone who participated in the 2025
@veupathdb.org
virtual workshop last week- it was a busy, engaging time!
#data
#parasites
#fungi
If you missed it, all recordings + exercises are available online for asynchronous learning:
veupathdb.org/veupathdb/ap...
4 months ago
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⏰ Reminder! The
@veupathdb.org
virtual workshop starts in exactly two weeks. We will dive into hands-on bioinformatics in a friendly setting, with no coding needed!
#data
#fungi
#parasites
#vectors
🧬 💻 ✨ Don’t forget to register and save your spot:
upenn.co1.qualtrics.com/jfe/form/SV_...
5 months ago
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reposted by
ASTMH
5 months ago
Exhibitor Spotlight: Swing by the exhibit hall this afternoon to visit
@veupathdb.org
at Booth 411 and BEI Resources at Booth 402
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@veupathdb.org
is at
#ASTMH2025
in ❄️🌨️Toronto! 🇨🇦 Stop by our booth in the exhibit hall to learn more about our data resources , and tell us about your research too. Plus, we have stickers and candy, and we're raffling off swag! 🍬☕
5 months ago
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Science, collaboration, and great conversations are just around the corner. In just two days, the
@veupathdb.org
team will be at the
#ASTMH2025
annual conference in Toronto 🇨🇦, Nov 9-13! 🗨️Visit us at booth #411 to learn about our resources and tools and tell us about your work.
#TropMed25
6 months ago
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📣
@veupathdb.org
is hosting a FREE virtual workshop! Dec 9-11, 2025, 3 hours per day. Short lectures & hands-on exercises will train you to maximize use of VEuPathDB resources to leverage diverse datatypes and generate new hypotheses. Register NOW!
upenn.co1.qualtrics.com/jfe/form/SV_...
6 months ago
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📢Job Alert: Bioinformatics Data Engineer at University of Liverpool - seeking a bioinformatician with expertise in pipeline development & genome annotation for analysis and annotation of pan-genomes, making data widely available via VEuPathDB. More:
www.jobs.ac.uk/job/DPF336/b...
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Bioinformatics Data Engineer at University of Liverpool
An opportunity for an academic position as a Bioinformatics Data Engineer is available, as advertised on jobs.ac.uk. Apply now and explore other academic job openings.
https://www.jobs.ac.uk/job/DPF336/bioinformatics-data-engineer
6 months ago
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📣Advance your skills in
#pathogen
genomics — no coding required — with the
#Fungal
Pathogen Genomics (Virtual) course
#FungiDB
@ensembl.org
#mycocsm
@yeastgenome.bsky.social
#CGD
🗓️ 1–5 June 2026 Deadline: 16 March 2026 Apply here:
coursesandconferences.wellcomeconnectingscience.org/event/fungal...
6 months ago
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#FungiDB/#VEuPathDB
&
#Ensembl
are teaming up to improve
#fungal
&
#oomycete
genome resources for
#phytopathogens
— & we want your input! 🧬🍄 🗓️ Complete the survey by Nov 1, 2025: 🔗
zurl.co/gKjC1
Your feedback will guide genome curation, annotation & data integration
#genomics
#foodsecurity
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Qualtrics Survey | Qualtrics Experience Management
The most powerful, simple and trusted way to gather experience data. Start your journey to experience management and try a free account today.
https://zurl.co/gKjC1
6 months ago
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Another chance for face-to-face connection 💬:
@veupathdb.org
PI David Roos is at the French Alliance for Parasitology and Health Care
@parafrap.bsky.social
Host–Parasite Relationships
#EMBOWorkshop
this week!
7 months ago
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reposted by
Today and tomorrow Oct 6/7, Omar Harb
@omarharb.org
from VEuPathDB is at the Neurospora 2025 meeting in Schroon Lake, NY!
@veupathdb.org
/ FungiDB community- if you're attending, please stop by and say hello! Tell us about your work and ask questions about ours. 💬 We'd love to connect.
7 months ago
0
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Today and tomorrow Oct 6/7, Omar Harb
@omarharb.org
from VEuPathDB is at the Neurospora 2025 meeting in Schroon Lake, NY!
@veupathdb.org
/ FungiDB community- if you're attending, please stop by and say hello! Tell us about your work and ask questions about ours. 💬 We'd love to connect.
7 months ago
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Our user comments campaign may be over, but your user comments are welcome and valuable EVERYDAY! Crowdsourced user knowledge fuels discovery and helps keep gene data accurate, accessible, and impactful. Visit any gene page on
@veupathdb.org
or component sites to add a comment!
7 months ago
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The final tally of the
@veupathdb.org
user comments campaign at
#MPM2025
: Most user comments were entered on AmoebaDB followed by PlasmoDB, and then ToxoDB. 🎉 🏆The real winners: All VEuPathDB users, who benefit from current and reliable gene information!
7 months ago
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The
@veupathdb.org
user comments campaign at
#MPM2025
yielded 200 user comments from 66 attendees! Thanks, contributors 💐 For example: a comment on gene cgd5_3570 on CryptoDB pointed out that GGC proteins exhibit male-specific expression according to single-cell RNA seq. Good to know!
7 months ago
1
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reposted by
The MRC Centre for Medical Mycology
7 months ago
Fungi can be found everywhere. People can get fungal diseases from contact with an infected animal, skin scrapes that are exposed to fungi in dirt or plants, and from breathing fungal spores in the air. 📸 Microscopy: D. Thomson, D. Corzo Leon, A. Hudson, T. Bedekovic, M. M. Guillan
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The
@veupathdb.org
team is excited to be attending the MPM conference this week! 💬 Stop by our booth to chat with us ⌨️ Participate in our User Comments campaign- share your knowledge on gene pages and pick up your free "Got Parasites?" mug at the booth:
veupathdb.org/veupathdb/ap...
7 months ago
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@veupathdb.org
communities — connect with us at these upcoming meetings! ✅ Stop by our booth and say hi ✅ Participate in our user comments campaign to win free swag at MPM (starting this Sunday!)✨
veupathdb.org/veupathdb/ap...
Will we see you there?
7 months ago
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NEW in
@veupathdb.org
: Subscription groups in your account! ✅ Green checkmark = active subscriber group Manage group membership from the new Subscription tab in your account (click on the user avatar in the upper right corner of the site). Thanks for supporting open access!
7 months ago
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We are excited to announce that, coinciding with MPM XXXVI,
@veupathdb.org
is running a user comment campaign now thru’ Sep 18, 2025. Contribute your knowledge to gene pages and win a free mug (or a T-shirt, if you’re an overachiever)!
#parasites
Details here:
veupathdb.org/veupathdb/ap...
8 months ago
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reposted by
British Mycological Society
8 months ago
The Scarce Fungus Weevil lays its eggs only in Cramp Balls (or King Alfred's cakes) - fungi that grow on dead Ash wood. With Ash dieback & the felling of Ash trees threatening their habitat, the beetle's future is uncertain.🌳 Read the
#UKFungusDay
blog:
www.ukfungusday.co.uk/anecessarywe...
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A necessary weevil | UK Fungus Day
Home
https://www.ukfungusday.co.uk/anecessaryweevil
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reposted by
ParasitesRule
8 months ago
Did you submit an abstract to
#mpm2025
? Notifications went out this week. Check you spam folders if you don't see an email in your inbox.
@rmc9z.bsky.social
@mjgubbels.bsky.social
@omarharb.org
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A study reports that pladienolide B, a splicing inhibitor, reduces
#Cryptococcus
neoformans growth. Combined treatment with FK506 results in enhanced antifungal activity. Transcriptomic analysis reveals disrupted RNA processing and intron retention.
journals.asm.org/doi/10.1128/...
#fungi
#fungal
9 months ago
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🌾 Rice blast fungus threatens global food security. New study uncovers the role of the GET complex in
#Magnaporthe
oryzae, showing key proteins (MoGet1/2/3) are vital for growth, stress response & infection. Targeting GET could aid crop protection.
doi.org/10.1371/jour...
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Characterisation of guided entry of tail-anchored proteins in Magnaporthe oryzae
Author summary Rice blast disease, caused by Magnaporthe oryzae is a devastating disease of rice, causing major economic loss in rice production across the globe. Since its isolation in 1892, M. oryza...
https://doi.org/10.1371/journal.ppat.1013011
9 months ago
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#Candida
auris is a deadly, drug-resistant fungus. New study shows the calcineurin pathway controls its heat tolerance, membrane integrity & drug resistance. Targeting this pathway could open doors to better antifungal strategies.
#FungalResistance
doi.org/10.1371/jour...
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The calcineurin pathway regulates extreme thermotolerance, cell membrane and wall integrity, antifungal resistance, and virulence in Candida auris
Author summary The fungal pathogen Candida auris presents a global health threat due to its multidrug resistance and high mortality rates. Despite its clinical significance, the molecular mechanisms underlying its virulence and antifungal resistance remain poorly understood. This study investigates the complex role of the calcineurin signaling pathway in C. auris pathogenicity. Deletion of the calcineurin complex impairs extreme thermotolerance and compromises cell membrane and wall integrity, leading to increased susceptibility to azoles and echinocandins, antifungal agents targeting the cell membrane and wall, respectively. We also identified the Crz1 transcription factor as a downstream target of calcineurin signaling. Interestingly, unlike calcineurin mutants, Crz1 mutants are susceptible only to cell-membrane-targeting azoles but surprisingly exhibit increased resistance to cell-wall-targeting echinocandins, suggesting that the calcineurin pathway may regulate multiple transcription factors, including Crz1. Additionally, calcineurin was found to be essential for virulence in vivo, using two different animal infection models, Drosophila and mice. These findings highlight the essential role of the calcineurin pathway in C. auris virulence, offering novel insights into its role in antifungal resistance and virulence, and paving the way for targeted therapies.
https://doi.org/10.1371/journal.ppat.1013363
9 months ago
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New from @PLOSGenetics: VeA in
#Aspergillus
nidulans uses nuclear import/export signals to toggle between sexual & asexual development—connecting transcriptional control to secondary metabolism. 🔗
doi.org/10.1371/jour...
#Fungi
#Mycology
#Aspergillus
#VelvetComplex
#GeneRegulation
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The Aspergillus nidulans velvet domain containing transcription factor VeA is shuttled from cytoplasm into nucleus during vegetative growth and stays there for sexual development, but has to return in...
Author summary A controlled interplay of networks that control gene expression and the intracellular transport of their respective regulators is essential for survival of multicellular organisms. The ...
https://doi.org/10.1371/journal.pgen.1011687
10 months ago
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Last week we launched AI-powered gene expression summaries on gene pages on
@veupathdb.org
, and we made a short 2-minute video to show you how it works.
#AI
#data
🔬 Explore AI summaries for your favorite genes 💬 Tell us what you think! 👉 Watch the intro video now:
youtube.com/shorts/Z0K-B...
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AI Summarization
YouTube video by VEuPathDB
https://youtube.com/shorts/Z0K-BjOXYzE
10 months ago
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reposted by
Genetics Society of America
11 months ago
Using an alignment-free k-mer-based phylogenetic method,
@rowenahill.bsky.social
,
@mcmullan0.bsky.social
, and the team found that relationships between entire Starships differed from those inferred from captain genes. Read more about Starships fungal transposons in
#G3journal
:
buff.ly/vxOe5oq
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We would love your feedback on the new AI-powered expression summaries on gene pages in
@veupathdb.org
Go to Gene page > Transcriptomics > “AI Expression Summary” > Click to generate summary > Review the summary and give it a 👍or 👎 . You also have the option to fill a survey. Thank you!
11 months ago
0
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reposted by
Saccharomyces Genome Database
11 months ago
FlyBase needs your help! Because of recent changes to government funding, the NIH grant that supported FlyBase has been "terminated."
flybase.org
0
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🚀Big News! We’re now offering AI-powered summaries of expression data on gene pages in
@veupathdb.org
See expression patterns and get insights with a single click! 🧬🔎 Go to your favorite gene pages and look for “AI Expression Summary” under Transcriptomics.
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11 months ago
0
4
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reposted by
ParasitesRule
11 months ago
Registration and Abstract submission for MPMXXXVI are now open! Abstract submission deadline is June 27th, get yours in quickly.
@rmc9z.bsky.social
@mjgubbels.bsky.social
@omarharb.org
🔗https://www.parasitesrule.com/mpm-xxxvi
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