This week I presented DataSAIL at the #ISMBECCB2025 conference in #Liverpool It has been an amazing chance and experience to meet many people working on information leakage. And getting great ideas to extend it Nicely supervised by & colaborated with @dbblumenthal.bsky.social @ok55991.bsky.social

Very happy to see DataSAIL published in @naturecomms.bsky.social. Give it a try if you want to test if your ML models generalize to OOD scenarios. Great collaboration between @uni-saarland.de and @fau.de :-)

Are you ready to challenge yourself and compete with the brightest minds in AI and computer science? 🧠 Join the FAU AI Innovation Challenge 2025! Compete for 10.000€ in prizes in various categories ranging from game AI, cybersecurity & more. 👉 Learn more: go.fau.de/1beg-

Deep learning models for sequence-based PPI prediction still fail to yield reliable predictions in challenging scenarios. Great work led by the amazing Timo Reim and @judith-bernett.bsky.social

🧬🖥️ Proud to share our latest update on PPI predictions – "Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65" doi.org/10.1101/2025... by T. Reim, published with @itisalist.bsky.social @dbblumenthal.bsky.social, A. Hartebrodt, and me. What did we do? 1/15 🧵

Incredibly happy to finally see our manuscript "Emergence of power-law distributions in protein-protein interaction networks through study bias" published in @elife.bsky.social. doi.org/10.7554/eLif... It's been a long but fun journey with @dbblumenthal.bsky.social and @martinschaefer.bsky.social

🧬💻Transferring my paper posts here, starting off with "Cracking the black box of deep sequence-based protein-protein interaction prediction" doi.org/10.1093/bib/..., which I published together with @itisalist.bsky.social and @dbblumenthal.bsky.social. So what was it about? 1/13 🧵

🧬🖥️Tranferring my papers, Pt. 2: "Guiding questions to avoid data leakage in biological machine learning applications" doi.org/10.1038/s41592-024-02362-y, which I published with @itisalist.bsky.social @dbblumenthal.bsky.social @romanjoeres.bsky.social, D. Grimm, F. Haselbeck, and O.V. Kalinina. 🧵1/20

Reminder: #computational_biology position available in my team: - large-scale #proteomics #metabolomics data analysis - #rstats , #python, #machinelearning - great living in the ❤️ of the 🇮🇹 Alps ⛰️ 👉 info and apply: bit.ly/3wztFsN