yey! also spotted hackathon co-lead @philouail.bsky.social - I was only virtually attending 😔 - and very likely missed a lot of fun

Happy to announce that also our #SpectriPy package for cross-language #Rstats - #Python #MassSpectrometry data analysis is part of the just released @bioconductor.bsky.social release 3.22 🥳 This was a great collaborative effort! Thanks to all contributors! 💪

🚀 Bioconductor 3.22 is released! Thanks to all developers and community members for contributing to the project! 🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...

🧬 EuroBioC2026 is coming to Turku, Finland, from June 3–5, 2026! Expect 3 exciting days with the Bioconductor community, showcasing the latest advances in Bioconductor software and emerging technologies shaping computational biology. 👉 More details soon at eurobioc2026.bioconductor.org

🔬 New in #MassSpectrometry and @jorainer.bsky.social's team! SpectriPy bridges R & Python for data analysis. Breaking language barriers → more flexible & reproducible science. 🚀 🔗bit.ly/48L9yJa #RStats #Python #Bioinformatics #OpenSource

My take: Engineering *is* important. Ideas are cheap. Novelty is overrated. "Hyperparameter tuning" is a cynically dismissive term for something that is in fact the real, difficult problem.

🚀 New on the Bioconductor Blog: GPU Support in Bioconductor Bioconductor is building better support for GPU-accelerated package development for faster and more scalable analysis workflows Learn how package maintainers can leverage this new GPU infrastructure: blog.bioconductor.org/posts/2025-1...

New #HUMAN paper out! 🩸 Our partners from CEMBIO explored blood microsampling (DBS, qDBS, VAMS) for untargeted #lipidomics using high-throughput LC-MS. Volumetric devices show plasma-like precision & recovery! 🔗bit.ly/476qWXw

New #matchms release (0.31)🚀 With functionalities that were on our TODO list for a looooong time: Flash Entropy and BLINK scores! The new "FlashSimilarity" allows computing modified cosine, spectral entropy etc., about 100x faster (or more if you use Linux). #Python #opensource #massspec

Reminder 👇 Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy? ⏲️ 3 year position 📍 Bolzano, 🇮🇹 👉 apply if you like: - #rstats SW development - @bioconductor.bsky.social - large-scale #metabolomics data analysis - hiking ⛰️ 🔗 bit.ly/46AMawx

#EuroBioC2025 is over and it has been a blast! Thanks to all participants that came to @prbb.org for contributing to make such an enjoyable event and special thanks to the support from our sponsors, the organizing institutions @upf.edu @isglobal.org and the European @bioconductor.bsky.social Society

EuroBioC2025 is in full swing here in Barcelona! Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow! #EuroBioC2025 #Bioconductor #OpenScience #Community

Was really fun to present our #SpectriPy @bioconductor.bsky.social package for combined #rstats & #Python analysis of #MassSpectrometry data today at #EuroBioC2025 also available on Zenodo: doi.org/10.5281/zeno...

Dream job - research software engineer, in one of the most beautiful parts of the world

@philouail.bsky.social presenting the #Metabonaut tutorials for #metabolomics data analysis at #EuroBioC2025 @bioconductor.bsky.social conference. @human-dn.bsky.social #MassSpectrometry #ProudPI

Interested in integrating our R tools into Galaxy? 👉 apply if you like: - #rstats SW development - contributing to @bioconductor.bsky.social and @galaxyproject.bsky.social - large-scale #metabolomics data analysis - hiking ⛰️ 📍 Bolzano, 🇮🇹 ⏲️ 3 year position 🔗 info and apply: bit.ly/46AMawx

Reminder 📣 still time to apply to the position in my team! - statistical modeling - large scale #metabolomics and #proteomics data - #rstats , #python 📍 Bolzano, ⛰️, 🇮🇹 🔗https://eurac.onboard.org/jobs/Q4301nGV

🌟 Bioconductor 2025 CAB & TAB nominations are open! Join our advisory boards to support community growth or guide technical strategy. 📅 Apply by Aug 31 CAB: forms.gle/8NYxRGhprfuN... TAB: forms.gle/eqef9ThpUypc... #Bioconductor #RStats

Interested in a #PostDoc / researcher position in my team at Eurac Research 🇮🇹? 👉 apply if you like - analyzing large-scale #proteomics and #metabolomics data - #rstats and/or #Python - reproducible research - hiking ⛰️ (on weekends!) 🔗 eurac.onboard.org/jobs/Q4301nGV

Tuomas Borman from @antagomir.bsky.social lab demonstrating why data containers are so useful (book >> loose pages) Online book for microbiome analysis: microbiome.github.io/OMA/docs/dev... #GBCC2025

@jorainer.bsky.social and @philouail.bsky.social gave a great overview of the ecosystem around #RforMassSpectrometry and #XCMS! #MetSoc25 I am super glad they now also provide options to combine with #Python and #matchms (thanks🙏)

Philippine @philouail.bsky.social presenting #xcms , summary of 20 years development and recent extensions at the #MetSoc2025 conference! #ProudPI 😎 #rstats @bioconductor.bsky.social #metabolomics #MassSpectrometry

As mentioned in my talk yesterday at #MetSoc2025,@[email protected] and myself offered a bottle of wine to the winners of #CASMI 2016 contest. Pleased to confirm eventual delivery of a fine Czech Merlot to www.linkedin.com/in/tobias-ki... for winningCategory 3: Full Information.

Hi, in case your phone didn't pick up the QR code to the slides of my Hitch-Hikers Guide to Computational Metabolomics talk this morning at #Metabolomics2025, featuring #xcms, #massbank, not #metfrag but #CASMI and #MetFamily, please find them at doi.org/10.5281/zeno...

Steffen @sneumann.bsky.social on the history and background of @bioconductor.bsky.social during his keynote talk at the #MetSoc2025 conference 😎

📢 @philouail.bsky.social and I will present the #Metabonaut resource of #metabolomics data analysis tutorials at #MetSoc2025 where: BioinfoHub when: 15:00 will be loud during coffee break - so apologies if you can't hear 😔 #MassSpec #rstats @bioconductor.bsky.social

📢 Poster 1001 at #MetSoc2025: Marilyn De Graeve on our #SpectriPy #rstats package to integrate #python and #rstats packages for #MassSpec data analysis . TODAY

🧬 New from the Bioconductor Training Committee: We’re teaming up with @physaliacourses.bsky.social‬ for co-branded training in bioinformatics and computational biology. Details here 👉 blog.bioconductor.org/posts/2025-0...

🆕 The Cohort Profile paper of the Cooperative Health Research In South Tyrol is out on @intjepidemiol.bsky.social 🧵 academic.oup.com/ije/article/...

*Czech* out the presentations by our PIs and DCs during Metabolomics 2025! 😉 Chat with us about all things blood 👀 (or data) over coffee, beer or on the Charles Bridge 🍻 See you all in Prague ❣️ #MetSoc25 #metabolomics

🚀 New in Metabonaut: tested xcms on a 4,000+ sample LC-MS dataset — all on a laptop! 💻 Fully reproducible + now possible thanks to dev improvements in xcms. Vignette: rformassspectrometry.github.io/Metabonaut/a... Big thanks to @jorainer.bsky.social #RStats #MassSpec #OpenScience #Metabonaut

Bioconductor moving to Zulip for community chat stat.ethz.ch/pipermail/bi...

#ASMS2025 is around the corner, #MetSoc2025 is coming up soon... And if you don't have enough or you might missing out on these two, please consider this year's Munich Metabolomics Meeting. Registration is now open. We have @pluskal-lab.org as wonderful keynote speaker www.munichmetabolomics.com

📢 Job opportunity: a post-doc position in multiomics data analysis is available in the group of my outstanding colleague Christian Fuchsberger, to whom enquiries should be sent www.eurac.edu/en/people/ch... eurac.onboard.org/jobs/Qmw91BG9

📝 New Bioconductor blog post! We’ve just published a recap of our first in-person course in Africa, held in Nairobi this March 🇰🇪 Read about the highlights, feedback, and what’s next: 👉 blog.bioconductor.org/posts/2025-0... #Bioinformatics #BioconductorAfrica #OpenScience #RStats #CapacityBuilding

Happy to share that our article on SpectriPy is now online: joss.theoj.org/papers/10.21... Combining best of both worlds, #RStats and #Python! #metabolomics #lipidomics Thanks to @jorainer.bsky.social for leading this and thanks to all co-authors!

Just published in JOSS: 'SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python' https://doi.org/10.21105/joss.08070

Thrilled to share that our paper "SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python" was published in @joss-openjournals.bsky.social 🥳 This was a great community effort! Big 🙌 to all contributors! #MassSpectrometry + #rstats + #Python 👉 doi.org/10.21105/jos...

📣 EuroBioC2025 Registration is Open! 🎉 📍 Barcelona, 17–19 Sept 2025 Join us for keynotes, talks, workshops & more on open-source bioinformatics & Bioconductor. 🔗 eurobioc2025.bioconductor.org/pages/regist... #EuroBioC2025 #Bioinformatics

we also just submitted the package to @bioconductor.bsky.social - awaiting review 😊

Our results on the influence of hormonal contraceptives on plasma proteins is online @commsmed.nature.com Great collaboration with Markus Ralser's lab. Big thanks to co-first authors Nikola and Clemens 🙌 #CHRISstudy doi.org/10.1038/s438...

Updates in 🦕 #xcms #rstats #metabolomics package: 👉 retention time alignment against external data set 👉 chromatographic peak quality metrics 👉 performance improvements Available in @bioconductor.bsky.social release 3.21 🚀 Up next: memory-saving analysis of very large data sets 😎 #TeamMassSpec

Bioconductor 3.21 is released! A huge thank you to all developers and community members for your contributions. Explore what’s new in the full release announcement: bioconductor.org/news/bioc_3_... #Bioconductor #RStats

And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... ! Next on the list submission of the package to 👉 @bioconductor.bsky.social

Update : the upcoming version of our MsBackendMgf @bioconductor.bsky.social #rstats package will support import from *annotated* MGF files 🥳. #MassSpectrometry #TeamMassSpec bit.ly/3FSoTLB

Great resource/starting point for #metabolomics data analysis with #rstats and @bioconductor.bsky.social !

From @csoneson.bsky.social , @mramos148.bsky.social, @jorainer.bsky.social & colleagues in @plos.org #Computational #Biology | Eleven quick tips for writing a #Bioconductor package | #Bioinformatics #Education #Rstats #PLOSCBQT 🧬 🖥️ 🧪 🔓 ⬇️ journals.plos.org/ploscompbiol...

📣 EuroBioC2025: Abstract Submissions Open! Join us in Barcelona, Spain 🇪🇸, Sep 17-19, 2025, for the European Bioconductor Conference! Submit your abstract for a short talk, workshop, or poster by Apr 24. ➡️ Submit https://buff.ly/3EN9w6P #EuroBioC2025 #Bioinformatics #RStats #DataScience

It’s time to introduce the HUMAN project’s associated partners. One of our partners is Physikit, a company that delivers at-home testing solutions. We’re featuring one of Physikit’s founders, Maros Mastrak, who also happens to be leading HUMAN dissemination team! 1/2

📣 GBCC2025 Abstracts & Registration Open! Join us June 23-26, 2025, at Cold Spring Harbor Lab for the first Galaxy & Bioconductor Community Conference. 🗓 Abstract Deadline: April 1 🔗 Submit/Register: gbcc2025.org #GBCC2025 #Bioconductor #DataScience #OpenSource