Bram Verhagen
@bramverhagen.bsky.social
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📥 149
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PhD student in the Tanenbaum group
@hubrechtinstitute.bsky.social
Happy to share our preprint! Using massively parallel reporter assays, single-molecule imaging, deep learning and cryo-EM, we decode the sequence requirements for translation initiation and describe the “extended translation initiation sequence” (eTIS) that modulates start codon recognition. 🧵👇
12 days ago
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Bram Verhagen
Francesca Mattiroli
25 days ago
We are looking for a PhD student to study chromatin changes related to heart regeneration, in collaboration with
@bakkerslab.bsky.social
. Please share and apply!
www.hubrecht.eu/nl/vacature/...
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PhD student - 38 hours p/w - Hubrecht Institute
We are looking for PhD student in the group of Dr. Francesca Mattiroli at the Hubrecht Institute. The successful candidate will work in a collaborative project between the Mattiroli lab and the lab of...
https://www.hubrecht.eu/nl/vacature/phd-student-38-hours-p-w/
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Bram Verhagen
Michela Palamin
2 months ago
ChromSMF preprint is out!🚀
tinyurl.com/ChromSMF
We often piece together chromatin regulation layer by layer from separate assays. But this can be limiting! In
@arnaudkr.bsky.social
's lab, we developed a method to directly study multiple layers on the same DNA molecule! 🧬 What does this unlock? ⬇️
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Bram Verhagen
Sora Yang
2 months ago
My new lab at IGH (Montpellier) is recruiting a postdoc. We develop single-molecule imaging approaches to study RNA–protein dynamics in living cells. Full details & application:
euraxess.ec.europa.eu/jobs/417402
Please feel free to share.
#biophysics
#RNA
#microscopy
#postdoc
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Bram Verhagen
Marvin Tanenbaum
3 months ago
Out now in Cell Systems: We develop a technique to visualize influenza A virus in live cells with single viral RNA resolution. Combined with precise readouts of viral transcription, we map the whole influenza A viral life cycle and identify key bottlenecks in infection.
www.cell.com/cell-systems...
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Live-cell single-vRNP imaging identifies viral gene expression signatures that shape influenza infection heterogeneity
In this study, an imaging technology, “VISUN,” is developed that allows live-cell visualization of unmodified influenza virus during infection with single-vRNP resolution. Combining VISUN with multipl...
https://www.cell.com/cell-systems/fulltext/S2405-4712(25)00322-9
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Bram Verhagen
Micha Müller
3 months ago
Our paper on visualising influenza A virus in live cells with single viral RNA resolution is now out in Cell Systems 🥳 For more details about what we did, see the thread about the preprint below ⬇️
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Bram Verhagen
Ulrich Hohmann
6 months ago
Finally out in
@nature.com
! We uncovered a mechanistic framework for a general and conserved mRNA nuclear export pathway.
www.nature.com/articles/s41...
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Bram Verhagen
8 months ago
Are you interested in working on related projects? 🌱 The Knipscheer lab at the Hubrecht Institute (Utrecht, the Netherlands) has openings for a postdoc and a PhD position. Apply here:
www.hubrecht.eu/jobs
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Bram Verhagen
Laura Lorenzo Orts
8 months ago
I am excited to announce that I will be moving to IMB Mainz next year! The Winter call for the IPP PhD program is now open; if you are interested in maternal
#mRNA
regulation and
#translation
in early vertebrate development, please apply! Deadline: 16 October. More info:
www.imb.de/students-pos...
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Laura Lorenzo Orts
IMB Mainz
https://www.imb.de/students-postdocs/international-phd-programme/apply-to-ipp/projects-offered/laura-lorenzo-orts
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Ina Sonnen
11 months ago
Please pread the word. We have just launched the Hubrecht International PhD Program (HIPP). Are you looking for a PhD position in molecular and developmental biology or related subject in an international, very supportive and collaborative environment? Then apply to the HIPP!! 👇
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Jeroen van den Berg
about 1 year ago
🧬Postdoc position alert! 🚨 We're hiring a postoc in Computational Modeling of Epigenetic Inheritance at the Hubrecht Institute (Alexander van Oudenaarden, Utrecht 🇳🇱) & Danish Cancer Institute (Anja Groth, Copenhagen 🇩🇰). Come work in our collaberative team of top scientists
shorturl.at/avBBy
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Postdoctoral Researcher - Computational modeling of Epigenetic Inheritance - 38 hours p/w - Hubrecht Institute
About the Project Faithful inheritance of the epigenome in proliferating cells critically underpins human development and health. While DNA replication fidelity and DNA mutation rates are well underst...
https://shorturl.at/avBBy
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Bram Verhagen
Sebastiaan van Heesch
about 1 year ago
### PhD position alert ### Please repost! I'm excited to announce a new *PhD position* within our group. We are looking for a super-motivated candidate with a solid basis in wet- and dry-lab research. Apply now & make sure to include all docs!
werkenbijprinsesmaximacentrum.nl/en/vacancy/p...
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PhD Position: Unraveling the Dark Proteome in Pediatric Cancer - Werken bij Prinses Maxima Centrum
Background For decades, vast stretches of the genome were dismissed as non-functional ‘junk’. However, our group and others have revealed that these regions harbor numerous non-canonical open reading ...
https://werkenbijprinsesmaximacentrum.nl/en/vacancy/phd-position-unraveling-the-dark-proteome-in-pediatric-cancer/
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Bram Verhagen
Hubrecht Institute
about 1 year ago
Congratulations to
@bramverhagen.bsky.social
who successfully defended his PhD on May 8th! He developed a new tool, called RiboScan, which helped him discover new sequences in the mRNA that contribute to finding the start site of the coding sequence. See:
https://www.hubrecht.eu/phd-bram-verhagen/
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Bram Verhagen
Francesca Mattiroli
about 1 year ago
Want to learn more about chromatin and its dynamics? Read this review by Charlotte and Jolijn in our lab, aimed at giving an overview on this and the ways this is dealt with during transcription, replication and damage repair. Thanks to Biochemistry for inviting us!
doi.org/10.1021/acs....
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Always on the Move: Overview on Chromatin Dynamics within Nuclear Processes
Our genome is organized into chromatin, a dynamic and modular structure made of nucleosomes. Chromatin organization controls access to the DNA sequence, playing a fundamental role in cell identity and...
https://doi.org/10.1021/acs.biochem.5c00114
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Bram Verhagen
Marvin Tanenbaum
about 1 year ago
Very excited to share a new paper from the lab! We visualize RSV infection with single-vRNP resolution and show how the virus coordinates transcription and replication with the formation of viral factories, biomolecular condensates that act as sites of viral genome control.
doi.org/10.1101/2025...
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Pre-assembly of biomolecular condensate seeds drives RSV replication
During infection many RNA viruses, including respiratory syncytial virus (RSV), form specialized biomolecular condensates, inclusion bodies (IBs), where viral transcription and replication occur[1][1]...
https://doi.org/10.1101/2025.03.26.645422
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Bram Verhagen
Hubrecht Institute
about 1 year ago
We challenged our researchers to describe their work in 10 words or less. See how they did in this video!
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