Baptiste Alberti
@baalberti.bsky.social
📤 25
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Bioinformatician and PhD student in Yad Ghavi-Helm lab
reposted by
Baptiste Alberti
Laura Cantini
4 days ago
Happy to share STORIES out now on Nature Methods STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states. Led by Geert-Jan Huizing and Jules Samaran
www.nature.com/articles/s41...
@pasteur.fr
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STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport - Nature Methods
By learning a differentiation potential using an optimal transport-based approach, STORIES models and infers cell fate trajectories using spatiotemporal omics data.
https://www.nature.com/articles/s41592-025-02855-4
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reposted by
Baptiste Alberti
Yad Ghavi-Helm
23 days ago
Ever wondered what drives enhancer-promoter specificity? Why would an enhancer activate one gene rather than another neighboring one? Check our latest preprint, led by
@mmasoura.bsky.social
, to find out!
www.biorxiv.org/content/10.1...
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Promoter-proximal gatekeepers restrict pleiotropic enhancer inputs to achieve tissue specificity
Developmental enhancers are central regulatory elements that can activate multiple genes, yet how they selectively regulate one gene over its neighbours remains unclear. Using the Drosophila twist E3 ...
https://www.biorxiv.org/content/10.1101/2025.09.23.678065v2
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reposted by
Baptiste Alberti
Yad Ghavi-Helm
3 months ago
Merci au
@cnrsbiologie.bsky.social
de mettre en avant notre travail!
@baalberti.bsky.social
@paulvilloutreix.bsky.social
@igflyon.bsky.social
@ensdelyon.bsky.social
add a skeleton here at some point
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🚨 Our paper is out! 🚨 Check how spatial-scERA can predict enhancer activity in a virtual Drosophila embryo. Very proud of this first step in the research world published in
@narjournal.bsky.social
Thanks to
@yghavi.bsky.social
,
@paulvilloutreix.bsky.social
and all the scientists who made it real!
add a skeleton here at some point
4 months ago
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