I'm also working on an open-seadragon extension, which opens up a the possibility of streaming a whole host of possible tile based formats openseadragon.github.io Any open-seadragon users out there? or who use any of those formats? (see supported tile sources on the open-seadragon site)

One of the first uses we put our myst/any-widget interface to was to expose vizarr in Curvenote articles - vizarr being a popular JS viewer for the OME Zarr format. (The vizarr being the work of @manzt.sh and others at hms-dbmi) Some examples included 👇 opensci.dev/articles/019...

We've just moved our `any-widget` based directives and renders for @mystmd.org into a public repo on @curvenote.com . After quite a while tinkering these are nicely supporting interactive visualizations - more work to fully implement the full `any-widget` interface coming github.com/curvenote/cu...

Solving proxy problems today by moving back to vanilla single bundle SPAs

Another reel from a computational article on elementalmicroscopy.com this time with a 3D dataset - looking for surface defects. The journal is running on @curvenote.com's SCMS: curvenote.com/case-studies.... (btw sped up the boring spinner in this one to save us a few secs)

It's amazing to see authors publishing on Elemental Microscopy fully engaging with the Computational Article format! publishing articles with interactive content (jupyter/python backed in this case) that allow readers to not just only explore results but also methods!

Last week was full of great conversations at the CZI Open Science Meeting in sunny San Diego ☀️ - including on the first meeting of the new OpenRxiv organization - an exciting start to the next chapter for preprints. Read more in the post 👇

We’re proud to launch our SCMS — a platform that turns data, code, and figures into living, connected research ready to share and build on. Read the announcement here → bit.ly/3KGqHK8

It's great to have @buildwithjill.bsky.social on board for the journey with us! Jill dove straight into helping us hone our product focus and we're all excited for the months ahead.

Only a few days left to register to the Amsterdam Replication Games on July 19. Virtual participation is possible and coauthorship to a meta paper is granted. Register: www.surveymonkey.ca/r/Replicatio...

It was great to be getting some improvements to our checks UI into production yesterday! automated checks are run whenever something is submitted from the CLI or GitHub automations, and apply rules to the document structure - now with an improved surface for configuration @curvenote.com

Continuous Science Foundation is a new non-profit to advance tools, standards, and communities for iterative, integrated, collaborative, and continuous science. articles.continuousfoundation.org/articles/gro...

Ariane Loisel presents her poster about hydrothermal alteration at Teide volcano at #EGU25 🌋 She’s here now if you want to talk to her! @egu-gmpv.bsky.social

Preprinting helps accelerate dissemination of scientific knowledge. To what extent do researchers adopt preprinting? How does this vary by discipline and region? Together with Narmin Rzayeva and @stephenpinfield.bsky.social, I just published article answering these questions. osf.io/preprints/so...

Congratulations to DSI Research Scientist @matthewfeickert.com on receiving an inaugural URSSI Early-Career Fellowship for advancing scientific software development practices. dsi.wisc.edu/2025/04/30/f...

Today I'm delivering an open science lecture for our master students. These kind of lectures are one of the most enjoyable parts of my job

I am working with @samteplitzky.bsky.social on a working group in @force11.bsky.social for: Preserving Executable Research Content If you are interested in joining or following along, learn more here: curvenote.com/blog/force11...

This is painfully accurate.

#SciPy2025 submission deadline has been extended a week to 2025-03-05! I'll note that you **can edit your proposal after you submit it up until the deadline passes**. So "submit early, revise often"! www.scipy2025.scipy.org

Valentines Day lab meeting in the UT Insect Collection was unconventional.

This is fantastic: a 68 country data set with perceptions of science, science communication and climate attitudes. Featured in @nature.com Led by the formidable @nielsmede.bsky.social What a resource! Now we ‘just’ need a 2025/26 update given how it’s all changing. www.nature.com/articles/s41...

Found new #musictocodeby: One Arc Degree open.spotify.com/playlist/37i... (still ❤️ Solar Fields, Carbon Based Lifeforms too)

Hey there 🦋🧪, we're a new open access microscopy journal and wanted to introduce ourselves! EM aims to modernize scientific publishing for microscopy, by prioritizing open science, transparency, and accessibility and using open-source formats and interactive notebooks 🙌 @curvenote.com @mystmd.org 🚀

If you've been and Editor of a journal, DM me if you'd be up for a zoom to tell me all about your frustrations with journal software. Trying to design better tools!

As recently as January 2, 2025, #NASA had five modules for teaching #OpenScience on its web site. The #Trump administration has taken them down. science.nasa.gov/open-science... Thank goodness for the @archive.org Wayback Machine. web.archive.org/web/20250102... #TrumpAntiScience #USPolitics

embeds bring fragments of a cited work into the citing article, so when we are reading it on the web (its 2025) the content is available in place, with appropriate attribution. with some further UX tweaks this could be the basis for citations++ on the web!

Exploring in-text visualization of nucleotides 🧬 in markdown—using color-coded sequences to highlight patterns for data storytelling. Looking for ideas and pointers! Next, extending to highlight mutations, functional regions and trying protein sequences. #biology #ComputationalBiology #genomics

Important Covid editorial @science.org by Maria Van Kerkhove www.science.org/doi/10.1126/...

Good article on the consumption of scholarly articles by LLMs and how authors should think about this w/r/t open access. But it doesn't make the explicit point that CC BY NC ND (considered an OA license in most circles) could end up being a pitfall. 🧵 www.insidehighered.com/opinion/view...

🗺️ Ever wondered how citations map the network of science? The Social Systems Citations Theory (SSCT) tackles this, and a new study by Robin Haunschild & Lutz Bornmann uses #OpenAlex to create overlay maps. Full paper: doi.org/10.1371/jour... #openscience

The #SciPy2025 Call for Proposals is live (as of mid December 2024, sorry forgot to share) over on scipy2025.scipy.org! Deadline for submissions is 2025-02-26, so get submitting!

We've completed a 3-year field study on scientific poster design. But poster science doesn't really fit into an established journal. This is why I started my own journal with @Curvenote.com. Niche research, published for impact, with public peer review.

I love the “side quest” ancillary poster by Lorenzo Mantiloni et al on magma reservoirs. We all have fun offshoot projects like this. Maybe we should have a “Science Side Quests” session for pet projects! #AGU24

Very interesting ideas behind GeoAI and the combination of LLM / GenAI and graph reasoning - especially aspects of using LLMs to generate graphs from specific datasets. #AGU24

I was thrilled and honored when AGU and Curvenote approached me about adapting my code-first publication VESIcal into one of their first Jupyter notebook articles in the new format. Looking to submit my next soon! agu.curve.space/articles/NN0...

So i've concluded that panel discussions i.e. being on one, are hard. Not that the software dev in me needs a ticketing system for just any old question, but I often do need a bit of back and forth to figure out the question properly. Anyway, I did my first two this week and have learned!

How can research posters be improved? Mike Morrison, creator of the Better Poster Project, shares his insights in this Q&A. Check out the blog for more on how his design is changing the way science is shared. 🔗 Read the full Q&A: www.cos.io/blog/rese...

A lot of interesting sessions and demos from the Curvenote team at AGU this year. Check out the thread for a few highlights!

@row1.ca driving the Visible Geology app that he created ago and crushing the record! #AGU24

@row1.ca talking about computational notebook publishing and continuous science workflows #AGU24

Join Curvenote at #AGU24! where we are talking about #OpenScience computational notebook publishing, @mystmd.org and the future of science communication. 🌎 🚀 🧵 👇

#AGU24 Today I am participating in a session on Publication Transparency - talking about bringing publications closer to day-to-day research tools, to improve transparency, openness and give researchers much more control over how their work is communicated. agu.confex.com/agu/agu24/me...

If you're at #AGU24, join us to see @row1.ca discuss some of the recent progress happening in the @mystmd.org @projectjupyter.bsky.social ecosystem! @stevejpurves.bsky.social and I will be there and would love to connect!

Thinking about how to improve metadata on top of a paper that already exists... Abbreviations can probably be auto populated. What other information can we pull in to make richer links and reading experiences? cc @madubs.bsky.social @mikemorrison.bsky.social

Belated happy new year! Check out 3 Trends that will improve science in 2024 (besides AI). So we can cure all diseases sooner. Watch this video: www.youtube.com/watch?v=HtFI... Featuring @curvenote.com , @projectjupyter.bsky.social, MetaScience, Quarto, MyST Markdown @mystmd.org, and others! 🧪

Excited that Curvenote is partnering with Scholar Nexus, a spin out from Neuromatch. Read more in our announcement: https://curvenote.com/news/curvenote-joins-forces-with-scholar-nexus