Marija Krasiļņikova
@scotomorph.bsky.social
📤 150
📥 49
📝 17
Parasitology @ McCulloch lab at the University of Glasgow
pinned post!
DNA replication beyond the cores of megabase chromosomes of T. brucei -- some of my PhD work is FINALLY out!
doi.org/10.1038/s414...
thank you to
@rmc9z.bsky.social
@marquescata.bsky.social
Emma, Dario, Kathryn, Graham and Craig!
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Nanopore sequencing reveals that DNA replication compartmentalisation dictates genome stability and instability in Trypanosoma brucei - Nature Communications
A full description of trypanosome genome replication has proved elusive. Here, after genome assembly, the authors reveal compartmentalisation of DNA replication activity and stability between transcri...
https://doi.org/10.1038/s41467-025-56087-3
9 months ago
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reposted by
Marija Krasiļņikova
kinetoplastids papers
about 12 hours ago
First Genome-Wide Centromere Map of Trypanosoma cruzi Reveals Linear and 3D Compartment Boundaries and Spatial Clustering
www.biorxiv.org/content/10.1101/2025.09.26.678825v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
4 days ago
Trypanosome histone variants H3.V and H4.V promote nucleosome plasticity in repressed chromatin.
www.biorxiv.org/content/10.1101/2025.09.24.678203v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
4 days ago
Targets of the human antibody response to the variant surface glycoprotein of Trypanosoma brucei
www.biorxiv.org/content/10.1101/2025.09.25.678491v1
0
1
1
reposted by
Marija Krasiļņikova
bioRxiv Genomics
8 days ago
The UTRs of Leishmania donovani vary in length and are enriched in potential regulatory structures
https://www.biorxiv.org/content/10.1101/2025.09.22.677690v1
0
1
3
reposted by
Marija Krasiļņikova
kinetoplastids papers
9 days ago
The mitotic spindle kinase MSK co-ordinates segregation of the nucleus and kinetoplast in Leishmania mexicana
www.biorxiv.org/content/10.1101/2025.09.19.677349v1
0
1
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New pre-print from Guy
@goldrieve.bsky.social
on vsgseq2 - a much improved, robust tool to analyse VSG expression in tryps
add a skeleton here at some point
12 days ago
0
1
0
reposted by
Marija Krasiļņikova
kinetoplastids papers
13 days ago
vsgseq2: an updated pipeline for analysis of the diversity and abundance of population-wide Trypanosoma brucei VSG expression
www.biorxiv.org/content/10.1101/2025.09.12.675796v1
0
4
3
reposted by
Marija Krasiļņikova
kinetoplastids papers
18 days ago
Chemical genetics reveals Leishmania KKT2 and CRK9 kinase activity is required for cell cycle progression
www.biorxiv.org/content/10.1101/2025.09.08.674917v1
0
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1
reposted by
Marija Krasiļņikova
Dr Joanne Power
19 days ago
Save the dates!!
@bspparasitology.bsky.social
Spring Meeting 2026 will be in Bonnie Glasgow! 7-9 April 2026, with a drinks reception in Glasgow City Chambers on the 6th of April 2026! Keep an eye on the BSP website for registration and abstract submission! Logo by
@shannaraeilean.bsky.social
! 🦟
1
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23
reposted by
Marija Krasiļņikova
kinetoplastids papers
20 days ago
A novel high-throughput single-cell DNA sequencing method reveals hidden genomic heterogeneity in the unicellular eukaryote Leishmania
www.biorxiv.org/content/10.1101/2025.09.10.675331v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
21 days ago
Transcriptomic and proteomic analysis of quiescent epimastigotes as a resource for investigating Trypanosoma cruzi persistence.
www.biorxiv.org/content/10.1101/2025.09.09.675056v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
25 days ago
Genome-wide overexpression screen reveals a novel transcription termination factor in Trypanosoma brucei
www.biorxiv.org/content/10.1101/2025.09.02.673782v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
29 days ago
A Trypanosome Trifecta: an independently tunable triple inducer system for genetic studies in Trypanosoma brucei.
www.biorxiv.org/content/10.1101/2025.08.31.673413v1
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0
1
reposted by
Marija Krasiļņikova
Faria Tryps Lab
about 2 months ago
How do parasites strategically organise their genomes to influence gene expression? If you’re curious, check our latest review in
@cp-trendsparasitol.bsky.social
!
@biologyatyork.bsky.social
@ybri-uoy.bsky.social
@pasteur.fr
www.sciencedirect.com/science/arti...
1
23
12
reposted by
Marija Krasiļņikova
bioRxiv Genomics
about 2 months ago
Single-molecule landscape of DNA replication pausing
https://www.biorxiv.org/content/10.1101/2025.08.14.670160v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
about 1 month ago
The absence of the Leishmania major telomerase TERT component links telomeres and cell homeostasis with infectivity
pubmed.ncbi.nlm.nih.gov/40848782/
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1
1
reposted by
Marija Krasiļņikova
Richard McCulloch
about 2 months ago
We’re pleased to share our new study, led by
@jezieldamasceno.bsky.social
, that used long-read, single molecule sequencing to reveal the full (?) picture of Leishmania DNA replication. Thanks, Mike Boemo and helpful reviewers
@uofgsii.bsky.social
www.sciencedirect.com/science/arti...
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Leishmania major chromosomes are replicated from a single high-efficiency locus supplemented by thousands of lower efficiency initiation events
DNA replication initiates at genome sites termed origins. Previous origin mapping approaches in the populations of the protozoan parasite Leishmania m…
https://www.sciencedirect.com/science/article/pii/S2211124725008654?ssrnid=5045705&dgcid=SSRN_redirect_SD
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reposted by
Marija Krasiļņikova
kinetoplastids papers
about 2 months ago
Integrating tRNA gene epigenomics and expression with codon usage unravels an intricate connection with translatome dynamics in Trypanosoma cruzi
pubmed.ncbi.nlm.nih.gov/40788054/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
about 2 months ago
Trypanosoma cruzi surface components: Why so many? Why so polymorphic?
pubmed.ncbi.nlm.nih.gov/40774760/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
about 2 months ago
Leishmania major chromosomes are replicated from a single high-efficiency locus supplemented by thousands of lower efficiency initiation events
pubmed.ncbi.nlm.nih.gov/40768333/
0
3
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
about 2 months ago
Discovery of unique mitotic mechanisms in <em>Paradiplonema papillatum</em>
pubmed.ncbi.nlm.nih.gov/40763799/
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1
1
reposted by
Marija Krasiļņikova
Jeziel D. Damasceno
about 2 months ago
Pleased 2 share our new article: single-molecule replication mapping in Leishmania using DNAscent. We show widespread stochastic origin firing and insights into genome variability.
www.cell.com/cell-reports...
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7
reposted by
Marija Krasiļņikova
kinetoplastids papers
2 months ago
Decoding post-transcriptional gene expression controls in trypanosomatids using machine learning
pubmed.ncbi.nlm.nih.gov/40735494/
0
3
2
reposted by
Marija Krasiļņikova
bioRxiv Genomics
2 months ago
Using the DNA language model, GROVER, to parse sequence and epigenetic effects on genome stability
https://www.biorxiv.org/content/10.1101/2025.07.23.666402v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
2 months ago
The microtubule-severing enzyme spastin regulates spindle dynamics to promote chromosome segregation in Trypanosoma brucei
pubmed.ncbi.nlm.nih.gov/40702310/
0
2
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G4s mapped in T. brucei using ChIPseq - finally!
add a skeleton here at some point
2 months ago
0
1
0
reposted by
Marija Krasiļņikova
bioRxivpreprint
2 months ago
Genome-wide mapping of DNA G-quadruplexes in Trypanosoma brucei chromatin reveals enrichment in coding regions
https://www.biorxiv.org/content/10.1101/2025.07.22.666098v1
0
3
3
reposted by
Marija Krasiļņikova
bioRxiv Genomics
3 months ago
Beyond the transcript: chromatin implications in trans-splicing in Trypanosomatids
https://www.biorxiv.org/content/10.1101/2025.07.08.663533v1
0
1
1
reposted by
Marija Krasiļņikova
bioRxiv Genomics
3 months ago
Telomere replication stress-induced DNA damage response triggers inflammatory signaling via canonical and non-canonical STING pathways
https://www.biorxiv.org/content/10.1101/2025.07.11.664434v1
0
3
1
reposted by
Marija Krasiļņikova
bioRxiv Genomics
2 months ago
Single-molecule sequencing maps replication dynamics across the fission yeast genome, including centromeres
https://www.biorxiv.org/content/10.1101/2025.07.16.665067v1
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
2 months ago
Comparative mitochondrial genome and transcriptome analyses reveal strain-specific features of RNA editing in Trypanosoma brucei
pubmed.ncbi.nlm.nih.gov/40671526/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
2 months ago
Insight into the epigenetic regulation of gene expression in the bloodstream and procyclic forms of Trypanosoma brucei through the involvement of G-quadruplexes
pubmed.ncbi.nlm.nih.gov/40677914/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
3 months ago
Beyond the transcript: chromatin implications in trans-splicing in Trypanosomatids
www.biorxiv.org/content/10.1101/2025.07.08.663533v1
0
4
3
reposted by
Marija Krasiļņikova
kinetoplastids papers
3 months ago
Role of the nucleotide excision repair endonuclease XPF in the kinetoplastid parasite Trypanosoma brucei
pubmed.ncbi.nlm.nih.gov/40603543/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
3 months ago
Structure and activity of the essential UCH family deubiquitinase DUB16 from Leishmania donovani
pubmed.ncbi.nlm.nih.gov/40570172/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
4 months ago
Stage-specific MCM protein expression in <em>Trypanosoma cruzi</em>: insights into metacyclogenesis and G1 arrested epimastigotes
pubmed.ncbi.nlm.nih.gov/40491435/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
4 months ago
Clinical <em>Trypanosoma cruzi</em> isolates share a common antigen repertoire that is absent from culture adapted strains
pubmed.ncbi.nlm.nih.gov/40501824/
0
2
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
3 months ago
Stumpy forms are the predominant transmissible forms of <em>Trypanosoma brucei</em>
pubmed.ncbi.nlm.nih.gov/40522086/
0
1
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
4 months ago
Hypothesis that ancestral eukaryotes sexually proliferated without kinetochores or mitosis
pubmed.ncbi.nlm.nih.gov/40492681/
0
2
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when worlds collide - german ravens appear to have trypanosomes
add a skeleton here at some point
4 months ago
0
0
0
reposted by
Marija Krasiļņikova
bioRxivpreprint
4 months ago
Cohesin sumoylation is required for repression of subtelomeric gene expression in Saccharomyces cerevisiae.
https://www.biorxiv.org/content/10.1101/2025.05.26.656218v1
0
2
2
reposted by
Marija Krasiļņikova
Faria Tryps Lab
4 months ago
So happy to share the first preprint from our lab on post-transcriptional regulation at the VSG expression-site body in trypanosomes.
@ybri-uoy.bsky.social
@york.ac.uk
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Specialised RNA decay fine-tunes monogenic antigen expression in African trypanosomes
Antigenic variation is a sophisticated immune evasion strategy employed by many pathogens. Trypanosoma brucei expresses a single Variant-Surface-Glycoprotein (VSG) from a large genetic repertoire, whi...
https://www.biorxiv.org/content/10.1101/2025.05.24.654301v1
2
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13
reposted by
Marija Krasiļņikova
kinetoplastids papers
4 months ago
Innovation through instability? Genome (dis)organisation in Trypanosoma cruzi
pubmed.ncbi.nlm.nih.gov/40399166/
0
4
3
reposted by
Marija Krasiļņikova
kinetoplastids papers
5 months ago
Cell surface localisation of GPI-anchored receptors in Trypanosoma brucei
www.biorxiv.org/content/10.1101/2025.05.02.651885v1
0
1
1
reposted by
Marija Krasiļņikova
Deegan Lab
6 months ago
3rd edition of the fantastic UK DNA replication meeting is happening next September in Edinburgh. Don't miss out 🧬🏴
www.biochemistry.org/events-and-t...
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UK DNA Replication Meeting 2026
Research in the DNA replication field is progressing at a remarkable rate. Technological innovations in biochemical reconstitution, structural biology, proteomics and DNA sequencing are helping to rap...
https://www.biochemistry.org/events-and-training/events-calendar/uk-dna-replication-meeting-2026/
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reposted by
Marija Krasiļņikova
Graham Kendall
6 months ago
New PhD position to study paper mills - Research Information
buff.ly/Z6IHRiG
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New PhD position to study paper mills - Research Information
Outputs are aimed at "advancing knowledge and produce actionable insights for the whole research community"
https://buff.ly/Z6IHRiG
0
25
19
reposted by
Marija Krasiļņikova
kinetoplastids papers
6 months ago
Evolutionary divergent kinetoplast genome structure and RNA editing patterns in the trypanosomatid <em>Vickermania</em>
pubmed.ncbi.nlm.nih.gov/40203041/
0
0
1
reposted by
Marija Krasiļņikova
kinetoplastids papers
6 months ago
Stochastic variation in surface protein expression diversifies Trypanosoma cruzi infection
www.biorxiv.org/content/10.1101/2025.04.07.647584v1
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1
1
reposted by
Marija Krasiļņikova
bioRxiv Genomics
6 months ago
Trypanosoma cruzi Has 32 Chromosomes: A Telomere-to-Telomere Assembly Defines Its Karyotype.
https://www.biorxiv.org/content/10.1101/2025.03.27.645724v1
0
4
3
reposted by
Marija Krasiļņikova
kinetoplastids papers
6 months ago
Precision-edited histone tails disrupt polycistronic gene expression controls in trypanosomes
www.biorxiv.org/content/10.1101/2025.03.21.644654v1
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2
2
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